AphanoDB

Assembly information

Description	ATCC201684	ATCC201684 pacbio	NC1	MF1	RB84	109
Assembly size (bp)	56917049	72556102	52049772	59750142	59394769	58418939
N50 (bp)	757563	1005788	11661	24852	29237	21846
Scaffold count	349	420	15477	7808	7095	6495
GC content (%)	47.69	47.27	47.73	47.46	47.45	47.43
Protein-coding Gene count	19530	23027	19911	22012	21892	21546

Description	Aphanomyces astaci genotype E	Aphanomyces stellatus strain 57867
Assembly size (bp)	45298076	62130275
N50 (bp)	3659	34018
Scaffold count	21610	7607
GC content (%)	48.51	52.55
Protein-coding Gene count	16479	25573

Structural overview

	Aphanomyces euteiches ATCC201684			Aphanomyces euteiches ATCC201684 pacbio
	Length (Mb)	Cov (%)	GC (%)	Length (Mb)	Cov (%)	GC (%)
Genic	29.01	50.98	50.46	33.4	46.01	50.75
Intergenic	26.3	46.23	44.6	32.6	44.93	44.2
Protein-coding	26.3	46.29	51.13	30.3	41.73	51.33
Intronic	2.7	4.80	43.87	3.1	4.19	44.78

	NC1			MF1
	Length (Mb)	Cov (%)	GC (%)	Length (Mb)	Cov (%)	GC (%)
Genic	28.3	54.46	50.41	32.3	54.00	50.32
Intergenic	23.7	45.54	44.53	27.5	46.00	44.1
Protein-coding	25.6	49.31	51.09	29.3	49.11	50.96
Intronic	2.5	4.73	43.78	2.7	4.53	43.75

	RB84			109
	Length (Mb)	Cov (%)	GC (%)	Length (Mb)	Cov (%)	GC (%)
Genic	32.4	54.49	50.4	31.7	54.20	50.38
Intergenic	27.0	45.51	43.94	26.7	45.80	43.94
Protein-coding	29.4	49.56	51.04	28.7	49.20	51.04
Intronic	2.8	4.64	43.89	26.8	4.59	43.79

	Aphanomyces astaci genotype E			Aphanomyces stellatus strain 57867
	Length (Mb)	Cov (%)	GC (%)	Length (Mb)	Cov (%)	GC (%)
Genic	18.6	41.17	54.38	37.5	60.37	56.53
Intergenic	26.6	58.83	44.39	24.6	39.63	46.48
Protein-coding	15.5	34.26	56.57	34.4	55.45	57.24
Intronic	2.2	4.98	42.97	2.9	4.65	48.63

Length distribution

	Aphanomyces euteiches ATCC201684					Aphanomyces euteiches ATCC201684 pacbio
	Min	Median	Mean	Max	N50	Min	Median	Mean	Max	N50
Gene (bp)	200	1170	1487	30467	1861	201	1114	1450	53410	1857
CDS (bp)	103	1059	1347	30111	1674	77	1007	1315	53021	1673
Exon (bp)	3	198	366	13653	663	3	198	379	14869	714
Intron (bp)	21	45	53	5977	46	38	45	53	4981	47
Intergenic distance (bp)	2	602	1369	44027	3508	2	577	1453	115492	4152

	NC1					MF1
	Min	Median	Mean	Max	N50	Min	Median	Mean	Max	N50
Gene (bp)	65	1100	1424	30503	1791	150	1139	1466	30503	1816
CDS (bp)	21	999	1289	30231	1596	100	1038	1333	30231	1626
Exon (bp)	3	201	358	14643	614	3	207	378	14643	673
Intron (bp)	26	45	48	2610	45	26	45	49	2745	45
Intergenic distance (bp)	2	465	744	20343	1215	2	593	1006	22858	1866

	RB84					109
	Min	Median	Mean	Max	N50	Min	Median	Mean	Max	N50
Gene (bp)	116	1151	1478	30467	1825	154	1149	1470	39662	1817
CDS (bp)	112	1050	1345	30195	1635	148	1044	1334	39411	1623
Exon (bp)	3	207	376	14800	667	3	206	376	14934	669
Intron (bp)	26	45	49	4795	45	26	45	49	3566	45
Intergenic distance (bp)	2	596	1011	30351	1887	2	619	1037	24862	1918

	Aphanomyces astaci genotype E					Aphanomyces stellatus strain 57867
	Min	Median	Mean	Max	N50	Min	Median	Mean	Max	N50
Gene (bp)	81	873	1132	18398	1413	156	1136	1467	40728	1840
CDS (bp)	75	744	942	16317	1134	146	1038	1347	40473	1683
Exon (bp)	3	228	352	9087	551	3	225	411	14941	735
Intron (bp)	26	53	82	3659	67	26	46	50	2227	46
Intergenic distance (bp)	2	554	846	19222	1375	2	509	863	27030	1590