Ae_3AL6774

--Gene component--
Ae_3AL6774 include 3 ESTs.
LibrariesAlignment
  • 0 EST(s) from interaction library
  • 3 EST(s) from saprophytic library
    • Display gene components fasta sequences
    Susko's test : p value = 0.241546 with a cutoff = 0.00256362
    		 Display ESTs alignement
    Display ace file

    --Repeat--
    TypeFamilyStart positionEnd position
    (CGA)nSimple_repeat174255
    (A)nSimple_repeat904933

    --Best hit on NCBI non redondant (nr) protein database--
    frame e value score hit length local identity percent positives putative function organism hit ID alignment
    2 6e-64 247 199 121/190 (63%) 143/190 (75%) peroxiredoxin Globodera rostochiensis emb|CAB48391.1| blastx details

    --Best hit(s) on PFAM database--
    InterPro ID Pfam ID domain description frame ORF e value start position end position
    IPR000866 PF00578 alkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen 2 1 4.5e-98 95 272

    --Gene Ontology--
    GO Aspect GO ID GO description
    molecular functionGO:0016209 antioxidant activity
    molecular functionGO:0016491 oxidoreductase activity

    --Best hit on 7 predicted proteomes--
    Organism e value score hit length frame hit ID alignment
    Phytophthora sojae 2e-76 282 378 2 141953 blastx details
    Phytophthora ramorum 6.000000000000001e-75 276 191 2 45922 blastx details
    Nectria haematococca 4e-51 197 214 2 102906 blastx details
    Arabidopsis thaliana 7e-50 194 266 2 AT3G11630.1 blastx details
    Toxoplasma gondii 2e-44 175 196 2 37.m00001 blastx details
    Plasmodium falciparum 2e-40 161 195 2 PF14_0368 blastx details
    Thalassiosira pseudonana 0.000000000000004 77.8 217 2 18089 blastx details 
    >Ae_3AL6774
GGAATCTGAGATCTTCATGCAGCATCTCCGCTCTGCCGTCTTGCGCGCCGCGCGCACTCA
ACTTCGTCGCCCTGTCGCCGCTGCGGCTGTGCGCGCGTTTCCTCAAAGCCAATCTTTGAT
TCAACCAAAGATGCAAGCTCGCCTCTTTGCTTCGCGCCCTCCTGCCCCAGTCCATGGCGA
CGACGACGAAGATGACGATGATGATTTTGACTACGACGACTACTTTGGCGGAGATGACGA
AGACGAAGACAACAAGGTCAAGTACCCAGCCCCAAAGGCGTTCATTGGCAAGCCTGCCCC
TGCTTTCACGGCTCCTGCTGTTGTCCGCGGTGACATTGATGAAATTTCGCTCCATGACTA
CCTCGGAAAGTATGTCGTCTTGTTCTTCTACCCCAAGGATTTCACCTACGTGTGCCCGAC
TGAAATCATTGCCTTCAACGATCGTGCCAAGGAGTTCGAAGCTCTTGACACGCAATTGAT
TTGCGCATCGACCGACACGCCAGAAGTGCATTTGGCCTGGACCCGCACCCCACGCAACGT
CGGTGGTTTGGGCAAGATGAAGATCCCCATGGTGGCTGATGTGACCAAGGTGATCTCGGC
CAAGTATGGCTGCTTGGGTGAATCCAATGGCTTCCCATACCGTGGCTTGTACGTGATTGA
TCGCGAAGGTATCTTGCAAAGCTACACGATCAACAACAACCCTGTCGGTCGCAGTGTCGA
CGAAGCTTTGCGTTTGGTCAAGGCTTTCCAATTCTACGAAGAACACGGCGAAGTGTGCCC
GGCCAACTGGCAACCTGGTGATGCGACTATCGTTGACAACCCAGTCGAATCGCAAAAGTA
CTTCAAGAACGTCAAGTAGAGTCATGTTTACTACTGACATTTTGAATAAATCGTCGCTGT
GCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA