Ae_2AL6063

--Gene component--
Ae_2AL6063 include 2 ESTs.
LibrariesAlignment
  • 0 EST(s) from interaction library
  • 2 EST(s) from saprophytic library
    • Display gene components fasta sequences
    Susko's test : p value = 0.4886635 with a cutoff = 0.004763696
    		 Display ESTs alignement
    Display ace file

    --Best hit on NCBI non redondant (nr) protein database--
    frame e value score hit length local identity percent positives putative function organism hit ID alignment
    1 2e-48 184 228 87/145 (60%) 110/145 (75%) phospholipid hydroperoxide glutathione peroxidase Phytophthora sojae gb|ABA29804.1| blastx details

    --Best hit(s) on PFAM database--
    InterPro ID Pfam ID domain description frame ORF e value start position end position
    IPR000889 PF00255 glutathione peroxidase 1 3 5.3e-21 1 75

    --Gene Ontology--
    GO Aspect GO ID GO description
    molecular functionGO:0004602 glutathione peroxidase activity
    biological processGO:0006979 response to oxidative stress

    --Best hit on 7 predicted proteomes--
    Organism e value score hit length frame hit ID alignment
    Phytophthora sojae 9.999999999999999e-51 184 228 1 108638 blastx details
    Phytophthora ramorum 1e-47 178 157 1 42015 blastx details
    Arabidopsis thaliana 1.0000000000000001e-39 159 232 1 AT4G11600.1 blastx details
    Thalassiosira pseudonana 1e-33 139 162 1 264688 blastx details
    Nectria haematococca 8e-27 113 171 1 73875 blastx details
    Plasmodium falciparum 8.000000000000001e-24 106 206 1 PFL0595c blastx details
    Toxoplasma gondii 1e-19 93.2 251 1 57.m00002 blastx details 
    >Ae_2AL6063
AGCGGCGTCAGTCAAATTTGGAACTGGACGAATCATGTCACGCTGGTCTCTGTTCGGACG
ACGCGCGTCGAGTCAATCAAGCGGCGACGATCCGACCAAGGCCAAATCGTTCTTTGAATT
GTCAGCCGTCGATATGGCTGGCCAAACCGTACCGATGAGCAAGTACAGTACCGTGGCCGC
GTCTGTCTTGTTGTGAACGTCGCGTCGCAGTGAGGCTTGACGCAACTCAACTACACTCAA
CTCGCCGCTCTTGATGCGAAATACCGCAATCAAGGCTTGGAAATCCTAGCATTCCCTTGC
AATCAGTTTGGAGGTCAAGAACCGGGCACGAACGAAAAGATCATGGAATTTGTCAAGACG
TTTGGCATCACGTTTCAATTCTTCAACAAGTGTGATGTCAATGGCGACAACACGGTGCCA
GTGTTTCAGTACCTGAAGCACCACCTCTCGGGACTCCTGGGCAACTTTATCAAGTGGAAC
TTTACCAAGTTCCTCGTCGATCGCGAGGGCCAACCGTTCAAGCGATACAGTCCCCAGACC
GCCCCCAACGACTTCGAAGGCGACATTGTCGAGCTCTTGTCCAAACAAGCGCCCAGGGAA
GAATCCAAGGAGGAAGCCAAGCAAGAATAGCTTGAAATGATGTCGAGCGTTATCTAGCTG
GAATCGCGCATCGTCCACATGAATGACAGACTCCTCTTCAAGCCGAGAGGTCAGAAGAGT
CTTGAGAATGCAGTCTTGCACCGCCAAGGAAACTTTTTGAGTGGGTTTCAGCCGTGCAAG
TTGCGCCGTGGCTTTGTGTGGCTCCAATTAGCTAAGGCTCAACACATATTGTTCATTTTT
TACTGTGTGCCGCTCATGGGCCATCATTACTTNNAAAAAAAAAAAAAAAA