BLASTX 2.2.9 [May-01-2004] BLASTX 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NX0AMYA7YC17CM1.SCF (idq=218988) (968 letters) Database: /home/amadoui/banque/thalassiora 11,390 sequences; 5,670,313 total letters Searching.......................done Score E Sequences producing significant alignments: (bits) Value jgi|Thaps3|264688|thaps1_ua_kg.chr_20000029 127 5e-30 jgi|Thaps3|261627|thaps1_ua_kg.chr_3000005 97 7e-21 jgi|Thaps3|35314|e_gw1.7.452.1 89 2e-18 jgi|Thaps3|263906|thaps1_ua_kg.chr_12000057 59 2e-09 jgi|Thaps3|12192|fgenesh1_pg.C_chr_24000068 33 0.16 jgi|Thaps3|3233|fgenesh1_pg.C_chr_3000167 32 0.21 jgi|Thaps3|23334|estExt_fgenesh1_pg.C_chr_70017 32 0.36 jgi|Thaps3|24325|estExt_fgenesh1_pg.C_chr_11a0113 29 2.3 jgi|Thaps3|23734|estExt_fgenesh1_pg.C_chr_80186 28 3.1 jgi|Thaps3|21336|estExt_fgenesh1_pg.C_chr_20521 28 3.1 jgi|Thaps3|22246|estExt_fgenesh1_pg.C_chr_40377 28 4.0 jgi|Thaps3|8205|fgenesh1_pg.C_chr_9000373 28 4.0 jgi|Thaps3|1356|fgenesh1_pg.C_chr_1000490 27 8.9 >jgi|Thaps3|264688|thaps1_ua_kg.chr_20000029 Length = 162 Score = 127 bits (319), Expect = 5e-30 Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 4/160 (2%) Frame = +3 Query: 396 SFYELSAVDLNGKLVPFEEYKGRVCVAFNAGSQCGLTDVNYKQFVELDKKYRDQGLQLLA 575 +FY+L D++G VP +KG V N S+ GLT VNY QF +L +Y +G ++LA Sbjct: 2 AFYDLVDKDMDGNEVPMSSFKGDVLCVVNVASK*GLTKVNYVQFSKLYDEYNSRGFKILA 61 Query: 576 FPSNSFG-QETGSASEIQSFVDRYGVT---FPVFQKAPVNGPQTQPVFKYLKQNASGSVF 743 FP N FG QE G+ +EI FV++ F F+K VNG T+ V+ +LK Sbjct: 62 FPCNQFGAQEPGTPAEILEFVEKNFQAKDKFTWFEKGHVNGKDTREVYSFLKAKLPSEDG 121 Query: 744 GNFIKWNFQKFLIDQDGKPIKRFSPKTTPSEIEAEIVELL 863 + I+WNF KF++D +G P KR+ PKT P +++++I ELL Sbjct: 122 TSDIRWNFAKFMVDHEGNPFKRYGPKTNPEDMKSDIEELL 161 >jgi|Thaps3|261627|thaps1_ua_kg.chr_3000005 Length = 151 Score = 97.1 bits (240), Expect = 7e-21 Identities = 54/159 (33%), Positives = 87/159 (54%), Gaps = 2/159 (1%) Frame = +3 Query: 396 SFYELSAVDLNGKLVPFEEYKGRVCVAFNAGSQCGLTDVNYKQFVELDKKYRDQGLQLLA 575 S Y + +D++G +Y G + + N + GLT NYK+ L KY +GL +LA Sbjct: 1 SIYRSNIMDIHGNQQQLMKYAGSISLIVNVACE*GLTKSNYKELAVLYDKYHKRGLNVLA 60 Query: 576 FPSNSFGQETGSASEIQSFV--DRYGVTFPVFQKAPVNGPQTQPVFKYLKQNASGSVFGN 749 FPSN F QE + EI +V + V FPVF +AP+ + VF+ +++ G Sbjct: 61 FPSNDFHQEKETNEEILEYVRSNFPEVRFPVFSRAPL---ASNLVFQLCEKHT-----GE 112 Query: 750 FIKWNFQKFLIDQDGKPIKRFSPKTTPSEIEAEIVELLQ 866 + WNF K+L+D +G+ +K + + P ++E +IV LL+ Sbjct: 113 SVAWNFHKYLVDGEGRAVKSYGHRVQPIDMEGDIVRLLE 151 >jgi|Thaps3|35314|e_gw1.7.452.1 Length = 153 Score = 89.0 bits (219), Expect = 2e-18 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 5/140 (3%) Frame = +3 Query: 390 VKSFYELSAVDLNGKLVPFEEYKGRVCVAFNAGSQCGLTDVNYKQFVELDKKYRDQ--GL 563 + SF+EL A D++ +V F+++KG+V V N S CG T+ +YK +L +KY+ L Sbjct: 10 ITSFFELQAQDIDENVVKFDQFKGQVTVVANVASYCGYTESHYKGLTKLHRKYKSSPTKL 69 Query: 564 QLLAFPSNSFG-QETGSASEIQSF-VDRYGVTFPVFQKAPVNGPQTQPVFKYLKQNASGS 737 +LAFP N FG QE + S I+ F +YGV F + K VNG V+ +LK+ A Sbjct: 70 NILAFPCNQFGEQEPETCSTIKRFATTKYGVEFTMMNKVDVNGLDASDVYLWLKKVAGPP 129 Query: 738 VFGNFIKWNF-QKFLIDQDG 794 I WNF F++ DG Sbjct: 130 ----RITWNFGTYFVVTPDG 145 >jgi|Thaps3|263906|thaps1_ua_kg.chr_12000057 Length = 106 Score = 59.3 bits (142), Expect = 2e-09 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Frame = +3 Query: 402 YELSAVDLNGKLVPFEEYKGRVCVAFNAGSQCGLTDVNYKQFVELDKKYRDQGLQLLAFP 581 Y LSA D NGKL+ E ++G V V NA C ++V Y + Y L++LAFP Sbjct: 2 YSLSAKDANGKLLSMESFEGYVTVIVNAARVCDYSEVFYGTLEHMHSVY-PYALEILAFP 60 Query: 582 SNSFGQETGSASE-IQSFVDRYGVTFPVFQKAPVNGPQTQPVFKYL 716 N + I+S G + + +NG T PVFKYL Sbjct: 61 FNHPNVTIDKCEDAIKSAEKSGGTKVHIMEAIDINGDSTHPVFKYL 106 >jgi|Thaps3|12192|fgenesh1_pg.C_chr_24000068 Length = 233 Score = 32.7 bits (73), Expect = 0.16 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 6/124 (4%) Frame = -2 Query: 613 AEPVSCPNELDGKAKSCRPWSRYFLSNSTNCL*FTSVKPHCEPALNATQTRPLYSSNGTS 434 AEP + P + + P LS S + ++ P P ++ + + L + S Sbjct: 7 AEPTTSPRPT---SPTLSPTLSPTLSPSLSPTLSPTLSPTLSPTISPSLSPTLSPALLNS 63 Query: 433 FPFKSTALSS*NDLTWFGSNSPTGSWIEAPAFVNEPNHSPCSSEDL------AESTTGST 272 FP S LS T F +N+PT + ++P F P+ SP SS ES T Sbjct: 64 FPTVSPTLSPTYAGTLFPTNTPTETPSKSPTFF--PSWSPTSSPTFVPSFSPTESPILIT 121 Query: 271 PTDP 260 PT+P Sbjct: 122 PTEP 125 >jgi|Thaps3|3233|fgenesh1_pg.C_chr_3000167 Length = 351 Score = 32.3 bits (72), Expect = 0.21 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Frame = +3 Query: 669 KAPVNGPQTQPVFKYLKQNASGSVFGNFIKWNFQKFLID-QDGKPIKRFSPKTTPSEIEA 845 K + G P +++++ + I+ NF+KFL+D + GK I+R+ K P +I Sbjct: 247 KVNLLGSGALPFWRWIEGSCRTPAGLGKIQANFEKFLVDGRTGKAIRRYPRKYQPYDIAD 306 Query: 846 EIVELLQ 866 +I ++Q Sbjct: 307 DIAAVVQ 313 >jgi|Thaps3|23334|estExt_fgenesh1_pg.C_chr_70017 Length = 3283 Score = 31.6 bits (70), Expect = 0.36 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 15/147 (10%) Frame = -2 Query: 610 EPVSCPNE---LDGKAKSCRPWSRYFLSNSTNCL*FTSVKPHCEPALNATQTR-----PL 455 +P S P++ L GK S S+S + S++P P+ + T P Sbjct: 1949 QPSSAPSDSPSLSGKPSSAP-------SDSPSLSGKPSLQPSILPSASGYPTSMPSSIPS 2001 Query: 454 YSSNGTSFPFKSTALS-------S*NDLTWFGSNSPTGSWIEAPAFVNEPNHSPCSSEDL 296 S N T+ P S +LS S N T S +P+ + P+F +P++SP S L Sbjct: 2002 SSGNPTTEPSDSPSLSGHPSSSPSDNPST---SGAPSSQPSDIPSFSGKPSNSPSDSPTL 2058 Query: 295 AESTTGSTPTDPNTNR*SGASSSRTNT 215 + + + P++ SGA SS ++ Sbjct: 2059 SAQPSSQPSSAPSS---SGAPSSHPSS 2082 Score = 27.3 bits (59), Expect = 6.8 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Frame = -2 Query: 508 SVKPHCEPALNATQTRPLYSSNGTSFPFKSTALSS*NDLTWFGS----NSPTGSWIEAPA 341 S KP P+L+ P SS +S P + +LS+ +T S +SP+ ++P+ Sbjct: 2143 SSKPSSSPSLS-----PSNSSEPSSVPSSNPSLSTEPSVTPSDSPSVSSSPSAMPSDSPS 2197 Query: 340 FVNEPNHSPCSSEDLAESTTGSTPTD 263 EP+ SP L S P+D Sbjct: 2198 QSGEPSSSPSDQPSLT-SEPSMAPSD 2222 >jgi|Thaps3|24325|estExt_fgenesh1_pg.C_chr_11a0113 Length = 1846 Score = 28.9 bits (63), Expect = 2.3 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = -2 Query: 508 SVKPHCEPALNAT-QTRPLYSSNGTSFPFKSTA--LSS*NDLTWFGSNSPTGSWIEAPAF 338 S +P P+LN T ++P SS + P S+A +SS ++ S S S AP+ Sbjct: 336 SSQPSSAPSLNPTLSSQP--SSAPSLMPSVSSAPSVSSAPSVSSEPSVSSAPSVSHAPSI 393 Query: 337 VNEPNHSPCSSEDLAESTTGSTPTDPNTN 251 +P+++P S ++ TG+ P+ + Sbjct: 394 STQPSNAPSDSPSVSSKPTGAPSESPSVS 422 Score = 27.7 bits (60), Expect = 5.2 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Frame = -2 Query: 379 SNSPTGSWIEAPAF----VNEPNHSPCSSEDLAESTTGSTPTDPNTNR 248 S+ PTG+ E+P+ +EP+ SP S ++S T STPT T++ Sbjct: 408 SSKPTGAPSESPSVSSMPTSEPSLSPSESSAPSDSPT-STPTTSPTSK 454 >jgi|Thaps3|23734|estExt_fgenesh1_pg.C_chr_80186 Length = 619 Score = 28.5 bits (62), Expect = 3.1 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 15/130 (11%) Frame = -2 Query: 616 LAEPVSCPNELDGKAKSCRPWSRYFLSNSTNCL*FTSVKPHCEPALNATQTRPLYSS--- 446 +A V + GK+K W R F S+++ +S K + A + T P S Sbjct: 1 MAATVKSQQQQAGKSKQKSLWKRMFKSSTS-----SSNKASADSASDKKSTTPSPPSIDN 55 Query: 445 --NGTSFPFKSTALSS*NDLTWFGSNSPTGSWIE----------APAFVNEPNHSPCSSE 302 NG + S++ SS +D + P S +E P+ N P+ +P S Sbjct: 56 RNNGANHRSNSSSTSSSSDSSINNQQHPDLSPMEEVLPTPIKSSKPSTNNGPDSTPRSRS 115 Query: 301 DLAESTTGST 272 A +T ST Sbjct: 116 SKATFSTAST 125 >jgi|Thaps3|21336|estExt_fgenesh1_pg.C_chr_20521 Length = 1062 Score = 28.5 bits (62), Expect = 3.1 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Frame = -2 Query: 490 EPALNATQTRPLYSSNGTSFPFKS--TALSS*NDLTWFGSNSPTGSWIEAPAFVNEPNHS 317 +P+ +++ S TS P +S TA SS T S+ P+ S E P+ +EP Sbjct: 838 QPSASSSDQPSSSSEPSTSSPTQSESTAPSSSLSPTATVSSQPSASSSEHPSASSEPTSL 897 Query: 316 PCSSEDLAESTTGSTPT 266 P + + A + S PT Sbjct: 898 PPTQANTASPSLSSIPT 914 >jgi|Thaps3|22246|estExt_fgenesh1_pg.C_chr_40377 Length = 247 Score = 28.1 bits (61), Expect = 4.0 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = -2 Query: 418 TALSS*NDLTWFGSNSPT----GSWIEAPAFVNEPNHSPCSSEDLAESTTGSTPTDPNTN 251 T+L +++FG +P G+ I + P HS +S +AE+ + P+D N Sbjct: 186 TSLGESKSVSYFGFANPLDVSYGAIILKLCYAKAPQHSSTASSSIAEAKKEAAPSDNQQN 245 >jgi|Thaps3|8205|fgenesh1_pg.C_chr_9000373 Length = 1062 Score = 28.1 bits (61), Expect = 4.0 Identities = 26/101 (25%), Positives = 44/101 (43%) Frame = -2 Query: 508 SVKPHCEPALNATQTRPLYSSNGTSFPFKSTALSS*NDLTWFGSNSPTGSWIEAPAFVNE 329 S+ P P+L ++ + +S TS P K+ S S+SPTG E P + Sbjct: 170 SMNPSQSPSL--VPSKAITASPITSSPSKAITASP-------VSSSPTGFPSEVPILAHS 220 Query: 328 PNHSPCSSEDLAESTTGSTPTDPNTNR*SGASSSRTNTCLA 206 S S ++ T P+ P + + S SS+T+ ++ Sbjct: 221 ELPSQAISMKPSQQTASEFPSQPVSEQPSQTISSQTSETIS 261 >jgi|Thaps3|1356|fgenesh1_pg.C_chr_1000490 Length = 854 Score = 26.9 bits (58), Expect = 8.9 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Frame = -2 Query: 400 NDLTW-----FGSNSPTGSWIEAPAFVNEPNHSPCSSEDLAESTTGSTPTDPNT 254 +DL+W FGS SP+ + +P EP SP + + S+T S P T Sbjct: 78 SDLSWNAGIVFGSWSPSKAPSVSPIATMEPTDSPVAKASESPSSTPSLLIAPPT 131 Database: /home/amadoui/banque/thalassiora Posted date: Mar 30, 2007 3:43 PM Number of letters in database: 5,670,313 Number of sequences in database: 11,390 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,297,544 Number of Sequences: 11390 Number of extensions: 194146 Number of successful extensions: 679 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 671 length of database: 5,670,313 effective HSP length: 95 effective length of database: 4,588,263 effective search space used: 1041535701 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)