BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig2455 NX0AMYA23YA08CM1.SCF NX0AMYA26YE07CM1.SCF
NX0AMYA26YB12CM1.SCF
         (933 letters)

Database: /home/amadoui/banque/thalassiora 
           11,390 sequences; 5,670,313 total letters

Searching.......................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

jgi|Thaps3|18089|gw1.8.258.1                                           78   4e-15
jgi|Thaps3|31169|e_gw1.1.789.1                                         54   7e-08
jgi|Thaps3|25314|estExt_fgenesh1_pg.C_chr_180001                       30   1.0  
jgi|Thaps3|24618|estExt_fgenesh1_pg.C_chr_130097                       30   1.3  
jgi|Thaps3|8215|fgenesh1_pg.C_chr_9000383                              29   1.7  

>jgi|Thaps3|18089|gw1.8.258.1
          Length = 217

 Score = 77.8 bits (190), Expect = 4e-15
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
 Frame = +2

Query: 323 VRGDIDE---ISLHDYLGKYVVLFF-YPKDFTYVCPTEIIAFNDRAKEFEALDTQLICAS 490
           ++G+  E    SL++YLG     F  +P DFT VC TE+ A     +EF   D +L   S
Sbjct: 4   IQGETQETTGFSLYNYLGDSWCCFLSHPADFTPVCTTELGAAQSLVEEFAIRDVKLCGFS 63

Query: 491 TDTPEVHLAWTRTPRNVGGLGKMKIPMVADVTKVISAKYGCLG----ESNGFPY--RGLY 652
            D  + H  W        G  ++  P+  D ++  + + G L     +  G P   R ++
Sbjct: 64  CDDSKRHKDWISDIDAATG-HRISFPLFCDPSRKYAIELGMLDPTLKDDEGMPLTVRAVF 122

Query: 653 VIDREGILQSYTINNNPVGRSVDEALRLVKAFQFYEEHGEVCPANWQPGDATIV 814
           +++    +         VGR+ DE LR V A Q  E+ G V PANWQPGD TIV
Sbjct: 123 ILNSAKEITLTMTYPACVGRNFDEILRAVDALQRAEKFGVVTPANWQPGDKTIV 176


>jgi|Thaps3|31169|e_gw1.1.789.1
          Length = 156

 Score = 53.9 bits (128), Expect = 7e-08
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 4/160 (2%)
 Frame = +2

Query: 284 IGKPAPAFTAPAVVRGDIDEISLHDYLGKYVVLFFYPKDFTYVCPTEIIAFNDRAKEFEA 463
           +G PAP+FT P      +   SL    GK+ VL+F+P  FT  C  E   F +   ++ A
Sbjct: 3   LGSPAPSFTLPNSKGQQVTLDSLSSS-GKWTVLYFFPGAFTSGCTLEARKFQEDVDKYHA 61

Query: 464 LDTQLICASTDTPEVHLAWTRTPRNVGGLGKMKIPMVADVTKVISAKYGCLGESNG---F 634
           L++Q++  S D+ + + A+ R         K+   M+ D    IS  YG      G   F
Sbjct: 62  LNSQIVGVSVDSVDKNSAFCREE-------KLDFFMLTDEGGSISKAYGSSLSIPGFGTF 114

Query: 635 PYRGLYVID-REGILQSYTINNNPVGRSVDEALRLVKAFQ 751
             R  Y+ID ++ +   +    + + R   E L  +K  Q
Sbjct: 115 SNRQTYIIDPQQNVRWVFVDVESHIPRHSAEVLEKLKELQ 154


>jgi|Thaps3|25314|estExt_fgenesh1_pg.C_chr_180001
          Length = 1223

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 689  SCSFARYLRDQSRTSHGMGSHWIHPSSHTW-PRSPWSHQPPWGSSSCPNH 543
            S S  RY+R++S   H          SH+  PR P   Q PW  S+ P H
Sbjct: 888  SASTKRYVRERSPNQHQQRQQQHRQPSHSQQPRQPTIPQQPW-QSTIPQH 936


>jgi|Thaps3|24618|estExt_fgenesh1_pg.C_chr_130097
          Length = 1964

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
 Frame = -2

Query: 659 QSRTSHGMGSHWIHPSSHT---------WPRSPWSHQPPWGSSSCPN 546
           QS+ +H    H+  PS+HT         WP S  S Q    ++SCP+
Sbjct: 488 QSQQAHLENEHYESPSNHTRILARRVLRWPGSVVSSQTKCSNNSCPS 534


>jgi|Thaps3|8215|fgenesh1_pg.C_chr_9000383
          Length = 516

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 635 GSHWIHPSSHTWPRSPWSH--QPPWGSSSCPNHRRCVGCGSRPNA 507
           G H+  P   T PR P  +  QPPWG    P      G G+ P A
Sbjct: 340 GGHY--PPYSTPPRGPHQYLEQPPWGRPGAPGTGTAGGGGAAPAA 382


  Database: /home/amadoui/banque/thalassiora
    Posted date:  Mar 30, 2007  3:43 PM
  Number of letters in database: 5,670,313
  Number of sequences in database:  11,390
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,815,334
Number of Sequences: 11390
Number of extensions: 193588
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 5,670,313
effective HSP length: 94
effective length of database: 4,599,653
effective search space used: 993525048
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)