BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig211 NX0AINT5YL11CM1.SCF NX0AINT1YD01CM1.SCF
NX0AMYA26YM05CM1.SCF NX0AINT1YH11CM1.SCF NX0AINT12YP10CM1.SCF
         (963 letters)

Database: /home/amadoui/banque/thalassiora 
           11,390 sequences; 5,670,313 total letters

Searching.......................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

jgi|Thaps3|7092|fgenesh1_pg.C_chr_7000475                              35   0.025
jgi|Thaps3|21661|estExt_fgenesh1_pg.C_chr_30179                        29   1.8  
jgi|Thaps3|264676|thaps1_ua_kg.chr_20000017                            29   2.3  
jgi|Thaps3|4653|fgenesh1_pg.C_chr_4000603                              29   2.3  
jgi|Thaps3|1237|fgenesh1_pg.C_chr_1000371                              28   4.0  
jgi|Thaps3|23264|estExt_fgenesh1_pg.C_chr_60630                        28   4.0  
jgi|Thaps3|23691|estExt_fgenesh1_pg.C_chr_80097                        28   4.0  
jgi|Thaps3|24466|estExt_fgenesh1_pg.C_chr_120134                       28   4.0  
jgi|Thaps3|10024|fgenesh1_pg.C_chr_15000014                            28   4.0  
jgi|Thaps3|2467|fgenesh1_pg.C_chr_2000422                              28   4.0  
jgi|Thaps3|25498|estExt_fgenesh1_pg.C_chr_19a_190190                   28   5.2  
jgi|Thaps3|5488|fgenesh1_pg.C_chr_5000530                              27   6.8  
jgi|Thaps3|16405|gw1.7.240.1                                           27   8.9  
jgi|Thaps3|23697|estExt_fgenesh1_pg.C_chr_80108                        27   8.9  
jgi|Thaps3|3043|fgenesh1_pg.C_chr_2000998                              27   8.9  
jgi|Thaps3|269210|estExt_thaps1_ua_kg.C_chr_70037                      27   8.9  

>jgi|Thaps3|7092|fgenesh1_pg.C_chr_7000475
          Length = 907

 Score = 35.4 bits (80), Expect = 0.025
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
 Frame = +1

Query: 619 LGPNYQQIPVNQPVQSQPKNYQRDGFMTVNGNQGGAPNYFPNSFNGPDYLANVPEPAKQV 798
           LG  + + P NQ V +Q             GN+ G P Y+P S  GP+ L  V  P   +
Sbjct: 491 LGATFTE-PTNQLVPAQ--------ISLAIGNETGVPTYYPTS--GPEALTEVITP---I 536

Query: 799 SQTVIRRYSSK---DEDNFTQAGEFFRNVLTEDERTRLVNNIASNLINAQPSIQA 954
           S T +   S++   D+      G+  R  L   + T LV N A+ L N +  + A
Sbjct: 537 SDTFLEYNSNQTFGDKQRLKVDGKPLRVTLIRFDMTPLVENKATALTNIKLRLYA 591


>jgi|Thaps3|21661|estExt_fgenesh1_pg.C_chr_30179
          Length = 458

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 595 RRRDGLEASCQAKVGCQEQSAQGRTPIAP 509
           RRRDGL AS  A+V  +  S + R P AP
Sbjct: 68  RRRDGLVASSPAQVANESSSKKRRIPRAP 96


>jgi|Thaps3|264676|thaps1_ua_kg.chr_20000017
          Length = 223

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -1

Query: 567 VRRRLDARNKVRRGERQLLHVAEVVRGIAVEDELADFLQRVRLVRPHLGHIKRVEALSQV 388
           V   L A   + + ER ++    VV       +L  +L+R+R  R  L + +   ALS+V
Sbjct: 63  VHSSLSAHPNILQRERNMM---AVVMEHCSRGDLQVYLKRLREERTFLSNAEIHHALSEV 119

Query: 387 LFGLSLRH 364
           L GLS  H
Sbjct: 120 LRGLSFLH 127


>jgi|Thaps3|4653|fgenesh1_pg.C_chr_4000603
          Length = 760

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 513 AIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPTDPSESTSAEPTQELS 683
           ++  +P A  S  PT + Q  S PS+     ++P S P     PS S SA PT + S
Sbjct: 81  SVSHMPSASPSESPTISTQPTSSPSMSPSNSSAPTSFPS--GSPSASPSAFPTSQPS 135


>jgi|Thaps3|1237|fgenesh1_pg.C_chr_1000371
          Length = 502

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -1

Query: 690 ITLIVLGLALHWLIHWDLLV----VRAETVAMRVRVGE 589
           I L++L +  +WLI+W +++    VR+  +     VGE
Sbjct: 63  IALLILSMGTYWLIYWGVIMRGLEVRSRPIFFDYSVGE 100


>jgi|Thaps3|23264|estExt_fgenesh1_pg.C_chr_60630
          Length = 542

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
 Frame = +1

Query: 25  NPATHLKDADMFWDFIS----------LRPETTHQVSFLFSDRGIPDG--YRHLNGYGSH 168
           N  + LK     WDF+           L+P  T  V  L +  GIPDG  Y  ++     
Sbjct: 273 NTFSELKMPHSIWDFVGALMVKAGILRLQPWITRDVEMLVNSYGIPDGDEYDAIHVRRGD 332

Query: 169 TFENVNAQGVVSYVKYHFKTDQGIRNLPVD 258
             +  +   V+ Y +    TD    NLPV+
Sbjct: 333 KLDVESRSNVLKYWRSKGYTD---GNLPVN 359


>jgi|Thaps3|23691|estExt_fgenesh1_pg.C_chr_80097
          Length = 721

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 804 DGHPSLQLEGRRQLHPSWRILPQCAHGRRTHSFG 905
           D  P  +L   +QL  ++   P C H R+ HS G
Sbjct: 114 DTPPVQRLVNLKQLGCAYNAYPSCTHSRKEHSLG 147


>jgi|Thaps3|24466|estExt_fgenesh1_pg.C_chr_120134
          Length = 357

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
 Frame = +3

Query: 300 PGLVRSHRSQGIPNMDAVHPSNDAS-------SSRTTLGSRLQPV*CDQGVVAQDVPVEG 458
           PG  ++ +S   P++ + +PSN  S       S+R ++ SR              V    
Sbjct: 194 PGCSKAGKSSQSPSVPSGNPSNQPSLSSQPSLSARPSMSSRPSVSSFPSVSSFPSVSSRP 253

Query: 459 SRQARPQPQSRELLQRRGAIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPT 638
           S  +RP   S   L  R ++   P    S  P+     +SRPS+     +S PS    P+
Sbjct: 254 SVSSRPSVSSSPSLSSRPSVSSRPSV--SSFPSV----SSRPSV-----SSRPSASSFPS 302

Query: 639 DPSE-STSAEPTQELST 686
           + S  S S+ P+ +LS+
Sbjct: 303 ESSRPSVSSFPSCKLSS 319


>jgi|Thaps3|10024|fgenesh1_pg.C_chr_15000014
          Length = 395

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 591 LLLGHASPPSRPELPTDPSESTSAE 665
           LLLG   PP  PE P  P+    AE
Sbjct: 338 LLLGRPQPPPLPEAPVQPASPPQAE 362


>jgi|Thaps3|2467|fgenesh1_pg.C_chr_2000422
          Length = 395

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 813 DDRLAHLLSRLRDVGQVVRSVEAVGEVIWRAALVAI 706
           DD  A + SR +++ Q+ +S+E +G +    A++ I
Sbjct: 298 DDLQAEIQSRDKEISQIAKSIEELGSIFKELAVLVI 333


>jgi|Thaps3|25498|estExt_fgenesh1_pg.C_chr_19a_190190
          Length = 2502

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +3

Query: 210 QVPFQDRPRHSQLARGCC*QIGRHQPRLRDPGLVRSHRSQGIPNMDAVHPSNDASSSRTT 389
           + P+Q   +HS         + +HQ + +    + SH  Q IP  +A+H   +       
Sbjct: 430 EAPYQQHKQHSLALGHSTNNLAQHQQQEQQMQ-IPSHFEQPIPFNNAIHHQAEGGDPAVQ 488

Query: 390 LGSRLQPV*CDQG 428
           L   L  + CD G
Sbjct: 489 LMGMLLSLVCDGG 501


>jgi|Thaps3|5488|fgenesh1_pg.C_chr_5000530
          Length = 869

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 612 PPSRPELPTDPSESTSAEPTQELST 686
           PP  P LP+D ++++   P + LST
Sbjct: 88  PPFEPTLPSDANDTSDGPPKRRLST 112


>jgi|Thaps3|16405|gw1.7.240.1
          Length = 247

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 19  KRNPATHLKDADMFWDFISLRPETTHQVSFLFSDRGI 129
           K NPA  +  A   W  I   P TTH    L   +GI
Sbjct: 33  KSNPAPFVHLASELWPGIKHSPTTTHSFIALLEKKGI 69


>jgi|Thaps3|23697|estExt_fgenesh1_pg.C_chr_80108
          Length = 2414

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 333 IPNMDAVHPSNDASSSRTTLGSRLQPV*CDQGVVAQDVPVEGSRQARP 476
           + N +   PS+   S+R++ GS       DQ VV+++VP   S    P
Sbjct: 178 LSNANDATPSSGMGSNRSSQGSNKFKSSSDQSVVSEEVPPPPSTSPSP 225


>jgi|Thaps3|3043|fgenesh1_pg.C_chr_2000998
          Length = 602

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 235 GIRNLPVDVADKLAGTNPDYA-------IQDLYEAIARKEYPTWTLYIQVMTQAQAE 384
           G+   P D  DKL G   D+A       +Q+  E +  +   TW+ + +++ + +AE
Sbjct: 295 GVEKFPKDRFDKLIGIGFDFAPRQSKDYMQNRSERLKSRLDETWSNWFEILKKYKAE 351


>jgi|Thaps3|269210|estExt_thaps1_ua_kg.C_chr_70037
          Length = 365

 Score = 26.9 bits (58), Expect = 8.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 831 LRAVATDDRLAHLLSRLRDVGQVVRSVEAVGEVIWRAALVAIHGHETI 688
           L+ V   D +   L    + GQ  R++E     +WR   V +HG  T+
Sbjct: 184 LKPVGRLDMMTEGLMIFSNDGQYARNLELPSNHLWRTYRVRVHGRLTL 231


  Database: /home/amadoui/banque/thalassiora
    Posted date:  Mar 30, 2007  3:43 PM
  Number of letters in database: 5,670,313
  Number of sequences in database:  11,390
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,255,407
Number of Sequences: 11390
Number of extensions: 231386
Number of successful extensions: 898
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 5,670,313
effective HSP length: 94
effective length of database: 4,599,653
effective search space used: 1039521578
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)