BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig1160 NX0AINT3YA24CM1.SCF NX0AINT26YO23CM1.SCF
NX0AINT22YN24CM1.SCF
         (985 letters)

Database: /home/amadoui/banque/thalassiora 
           11,390 sequences; 5,670,313 total letters

Searching.......................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

jgi|Thaps3|24142|estExt_fgenesh1_pg.C_chr_100110                       31   0.63 
jgi|Thaps3|21661|estExt_fgenesh1_pg.C_chr_30179                        29   1.8  
jgi|Thaps3|264676|thaps1_ua_kg.chr_20000017                            29   2.4  
jgi|Thaps3|4653|fgenesh1_pg.C_chr_4000603                              29   2.4  
jgi|Thaps3|23264|estExt_fgenesh1_pg.C_chr_60630                        28   4.1  
jgi|Thaps3|11498|fgenesh1_pg.C_chr_20000094                            28   4.1  
jgi|Thaps3|24466|estExt_fgenesh1_pg.C_chr_120134                       28   4.1  
jgi|Thaps3|1237|fgenesh1_pg.C_chr_1000371                              28   4.1  
jgi|Thaps3|10024|fgenesh1_pg.C_chr_15000014                            28   4.1  
jgi|Thaps3|25498|estExt_fgenesh1_pg.C_chr_19a_190190                   28   5.3  
jgi|Thaps3|5488|fgenesh1_pg.C_chr_5000530                              27   7.0  
jgi|Thaps3|25080|estExt_fgenesh1_pg.C_chr_150293                       27   7.0  
jgi|Thaps3|23841|estExt_fgenesh1_pg.C_chr_80400                        27   7.0  
jgi|Thaps3|16405|gw1.7.240.1                                           27   9.1  
jgi|Thaps3|3043|fgenesh1_pg.C_chr_2000998                              27   9.1  
jgi|Thaps3|23697|estExt_fgenesh1_pg.C_chr_80108                        27   9.1  
jgi|Thaps3|7092|fgenesh1_pg.C_chr_7000475                              27   9.1  

>jgi|Thaps3|24142|estExt_fgenesh1_pg.C_chr_100110
          Length = 662

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +1

Query: 670 SYSDTHRHRLGP-NYQQIPVNQPVQSQPKNYQRDGFMTV--NGNQGGAP-NYFPNSFNGP 837
           SY   HR    P +YQQ     P  +  ++  +DG  +V  N N G  P +Y+      P
Sbjct: 173 SYGPPHRSAPPPWDYQQQHSQMPPPTDSRSPPQDGPGSVPPNANHGPPPPSYYSQQQQHP 232

Query: 838 DYLAHVPDPAK 870
            Y  H P P++
Sbjct: 233 SYSHHPPPPSQ 243


>jgi|Thaps3|21661|estExt_fgenesh1_pg.C_chr_30179
          Length = 458

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 673 RRRDGLEASCQAKVGCQEQSAQGRTPIAP 587
           RRRDGL AS  A+V  +  S + R P AP
Sbjct: 68  RRRDGLVASSPAQVANESSSKKRRIPRAP 96


>jgi|Thaps3|264676|thaps1_ua_kg.chr_20000017
          Length = 223

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -2

Query: 645 VRRRLDARNKVRRGERQLLHVAEVVRGIAVEDELADFLQRVRLVRPHLGHIKRVEALSQV 466
           V   L A   + + ER ++    VV       +L  +L+R+R  R  L + +   ALS+V
Sbjct: 63  VHSSLSAHPNILQRERNMM---AVVMEHCSRGDLQVYLKRLREERTFLSNAEIHHALSEV 119

Query: 465 LFGLSLRH 442
           L GLS  H
Sbjct: 120 LRGLSFLH 127


>jgi|Thaps3|4653|fgenesh1_pg.C_chr_4000603
          Length = 760

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 591 AIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPTDPSESTSAEPTQELS 761
           ++  +P A  S  PT + Q  S PS+     ++P S P     PS S SA PT + S
Sbjct: 81  SVSHMPSASPSESPTISTQPTSSPSMSPSNSSAPTSFPS--GSPSASPSAFPTSQPS 135


>jgi|Thaps3|23264|estExt_fgenesh1_pg.C_chr_60630
          Length = 542

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
 Frame = +1

Query: 103 NPATHLKDADMFWDFIS----------LRPETTHQVSFLFSDRGIPDG--YRHLNGYGSH 246
           N  + LK     WDF+           L+P  T  V  L +  GIPDG  Y  ++     
Sbjct: 273 NTFSELKMPHSIWDFVGALMVKAGILRLQPWITRDVEMLVNSYGIPDGDEYDAIHVRRGD 332

Query: 247 TFENVNAQGVVSYVKYHFKTDQGIRNLPVD 336
             +  +   V+ Y +    TD    NLPV+
Sbjct: 333 KLDVESRSNVLKYWRSKGYTD---GNLPVN 359


>jgi|Thaps3|11498|fgenesh1_pg.C_chr_20000094
          Length = 790

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = -2

Query: 201 AVREEERHLMRGFRTERDEVPEHVGILQV----------RRGVALLRVNEAREENGVSEE 52
           AV +  + L  GFR +R+ V +  G+L            R G  +L+      + G   +
Sbjct: 462 AVVQRAKELFAGFRDDREMVQQFKGVLAACLCEAFDQLSRDGRQILKKKAGEVDGGAGGD 521

Query: 51  EDGRVVTH 28
           ++G  V H
Sbjct: 522 DEGAKVMH 529


>jgi|Thaps3|24466|estExt_fgenesh1_pg.C_chr_120134
          Length = 357

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
 Frame = +3

Query: 378 PGLVRSHRSQGIPNMDAVHPSNDAS-------SSRTTLGSRLQPV*CDQGVVAQDVPVEG 536
           PG  ++ +S   P++ + +PSN  S       S+R ++ SR              V    
Sbjct: 194 PGCSKAGKSSQSPSVPSGNPSNQPSLSSQPSLSARPSMSSRPSVSSFPSVSSFPSVSSRP 253

Query: 537 SRQARPQPQSRELLQRRGAIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPT 716
           S  +RP   S   L  R ++   P    S  P+     +SRPS+     +S PS    P+
Sbjct: 254 SVSSRPSVSSSPSLSSRPSVSSRPSV--SSFPSV----SSRPSV-----SSRPSASSFPS 302

Query: 717 DPSE-STSAEPTQELST 764
           + S  S S+ P+ +LS+
Sbjct: 303 ESSRPSVSSFPSCKLSS 319


>jgi|Thaps3|1237|fgenesh1_pg.C_chr_1000371
          Length = 502

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -2

Query: 768 ITLIVLGLALHWLIHWDLLV----VRAETVAMRVRVGE 667
           I L++L +  +WLI+W +++    VR+  +     VGE
Sbjct: 63  IALLILSMGTYWLIYWGVIMRGLEVRSRPIFFDYSVGE 100


>jgi|Thaps3|10024|fgenesh1_pg.C_chr_15000014
          Length = 395

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 669 LLLGHASPPSRPELPTDPSESTSAE 743
           LLLG   PP  PE P  P+    AE
Sbjct: 338 LLLGRPQPPPLPEAPVQPASPPQAE 362


>jgi|Thaps3|25498|estExt_fgenesh1_pg.C_chr_19a_190190
          Length = 2502

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +3

Query: 288 QVPFQDRPRHSQLARGCC*QIGRHQPRLRDPGLVRSHRSQGIPNMDAVHPSNDASSSRTT 467
           + P+Q   +HS         + +HQ + +    + SH  Q IP  +A+H   +       
Sbjct: 430 EAPYQQHKQHSLALGHSTNNLAQHQQQEQQMQ-IPSHFEQPIPFNNAIHHQAEGGDPAVQ 488

Query: 468 LGSRLQPV*CDQG 506
           L   L  + CD G
Sbjct: 489 LMGMLLSLVCDGG 501


>jgi|Thaps3|5488|fgenesh1_pg.C_chr_5000530
          Length = 869

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 690 PPSRPELPTDPSESTSAEPTQELST 764
           PP  P LP+D ++++   P + LST
Sbjct: 88  PPFEPTLPSDANDTSDGPPKRRLST 112


>jgi|Thaps3|25080|estExt_fgenesh1_pg.C_chr_150293
          Length = 1441

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 180 HLMRGFRTERDEVPEHVGILQVRRGVALLRVNEAREENGVSEEEDGRVVT 31
           HL R     R E  E     Q  RG+A +   +A +E  VS E DG   +
Sbjct: 784 HLERKLEKLRSEFIE-----QQSRGLATIAEGDANDEESVSSENDGEATS 828


>jgi|Thaps3|23841|estExt_fgenesh1_pg.C_chr_80400
          Length = 1006

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
 Frame = +1

Query: 673  YSDTHRHRLGPNYQQIP-VNQPVQSQPKNYQRDGFMT--VNGNQGGAPNYFPNSFNGPDY 843
            Y    R +  P Y  +  V+Q    Q   Y  DG      +   GG P Y  ++    + 
Sbjct: 809  YQQQSRPQYPPPYTHVASVSQYTSGQQVFYSNDGQYAGYYDTTSGGYPEYEDSASVSSNR 868

Query: 844  LAHVPDPAKQVSQTVIPSLSSKDENNFTQAGQILPN 951
             +  P  + Q     +P  +S+D  N T+  Q  PN
Sbjct: 869  SSDPPAASYQHLSPPLPHFNSQDYWNATEYYQYQPN 904


>jgi|Thaps3|16405|gw1.7.240.1
          Length = 247

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 97  KRNPATHLKDADMFWDFISLRPETTHQVSFLFSDRGI 207
           K NPA  +  A   W  I   P TTH    L   +GI
Sbjct: 33  KSNPAPFVHLASELWPGIKHSPTTTHSFIALLEKKGI 69


>jgi|Thaps3|3043|fgenesh1_pg.C_chr_2000998
          Length = 602

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 313 GIRNLPVDVADKLAGTNPDYA-------IQDLYEAIARKEYPTWTLYIQVMTQAQAE 462
           G+   P D  DKL G   D+A       +Q+  E +  +   TW+ + +++ + +AE
Sbjct: 295 GVEKFPKDRFDKLIGIGFDFAPRQSKDYMQNRSERLKSRLDETWSNWFEILKKYKAE 351


>jgi|Thaps3|23697|estExt_fgenesh1_pg.C_chr_80108
          Length = 2414

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 411 IPNMDAVHPSNDASSSRTTLGSRLQPV*CDQGVVAQDVPVEGSRQARP 554
           + N +   PS+   S+R++ GS       DQ VV+++VP   S    P
Sbjct: 178 LSNANDATPSSGMGSNRSSQGSNKFKSSSDQSVVSEEVPPPPSTSPSP 225


>jgi|Thaps3|7092|fgenesh1_pg.C_chr_7000475
          Length = 907

 Score = 26.9 bits (58), Expect = 9.1
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 697 LGPNYQQIPVNQPVQSQPKNYQRDGFMTVNGNQGGAPNYFPNSFNGPDYLAHVPDP 864
           LG  + + P NQ V +Q             GN+ G P Y+P S  GP+ L  V  P
Sbjct: 491 LGATFTE-PTNQLVPAQ--------ISLAIGNETGVPTYYPTS--GPEALTEVITP 535


  Database: /home/amadoui/banque/thalassiora
    Posted date:  Mar 30, 2007  3:43 PM
  Number of letters in database: 5,670,313
  Number of sequences in database:  11,390
  
Lambda     K      H
   0.318    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,724,058
Number of Sequences: 11390
Number of extensions: 247753
Number of successful extensions: 922
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 5,670,313
effective HSP length: 95
effective length of database: 4,588,263
effective search space used: 1064477016
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)