BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig1967 NX0AMYA15YP09CM1.SCF NX0AMYA16YJ14CM1.SCF
         (978 letters)

Database: /home/amadoui/banque/plasm_falciparum 
           5411 sequences; 4,065,673 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_falciparum_3D7|MAL6|PFF0380w|Pf Annotation|Plasmodium...    31   0.38 
Plasmodium_falciparum_3D7|MAL6|PFF0975c|Pf Annotation|Plasmodium...    30   0.84 
Plasmodium_falciparum_3D7|MAL1|PFA0295c|Pf Annotation|Plasmodium...    29   1.4  
Plasmodium_falciparum_3D7|MAL12|PFL0020w|Pf Annotation|Plasmodiu...    29   1.9  
Plasmodium_falciparum_3D7|MAL14|PF14_0593|Pf Annotation|Plasmodi...    27   5.4  
Plasmodium_falciparum_3D7|MAL6|PFF0480w|Pf Annotation|Plasmodium...    27   7.1  
Plasmodium_falciparum_3D7|MAL8|PF08_0117|Pf Annotation|Plasmodiu...    27   7.1  
Plasmodium_falciparum_3D7|MAL13|MAL13P1.365|Pf Annotation|Plasmo...    27   9.3  
Plasmodium_falciparum_3D7|MAL7|PF07_0086|Pf Annotation|Plasmodiu...    27   9.3  

>Plasmodium_falciparum_3D7|MAL6|PFF0380w|Pf
            Annotation|Plasmodium_falciparum_Sanger|(protein coding)
            hypothetical protein
          Length = 2753

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +3

Query: 621  NEYYRELIENK------WTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYVELYAK 782
            N+YY+  I N          KK+K P+       E + L   + FI++ EF  + ELY +
Sbjct: 1333 NKYYKLYIPNNNLHRTHIQHKKYKTPDNCRIFQKENIHLKNHLDFIYNTEF--FTELYVE 1390

Query: 783  DEELWHKDFAKAFQKLTEN 839
            DE   ++D  ++ Q + +N
Sbjct: 1391 DEYYDNEDTKQSIQPIYDN 1409


>Plasmodium_falciparum_3D7|MAL6|PFF0975c|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 505

 Score = 30.0 bits (66), Expect = 0.84
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = +3

Query: 588 GPWTRAEWTFSNEYYRELIENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYV 767
           GP      T S++ Y + I+N    +KW+   +Y  P  +    P +  F+     + Y+
Sbjct: 95  GPDQEKVITLSDKIYIDKIKNIIEYRKWRAKSKYRSPAKQ----PEEDMFV-----EGYI 145

Query: 768 ELYAKDEELW-----HKDFAKAFQKLTENGCHLEK 857
            +  +D+ L       KDF +  QK  +    L+K
Sbjct: 146 PIKRRDDNLLPHEKAEKDFEEIIQKYVDLENKLQK 180


>Plasmodium_falciparum_3D7|MAL1|PFA0295c|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 967

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
 Frame = +3

Query: 618 SNEYYRELIENKWTLKKWKGPEQYT-DPTG------------ELMMLPAD------MAFI 740
           +N YY+E+I NK    K   P  YT DP G            E+  +P+D      ++F 
Sbjct: 725 ANNYYKEVIYNKLHKIKHLRPPNYTYDPKGLITKNGAGTKGIEIFDMPSDINEWNKISFC 784

Query: 741 WDPEFKKYVELY 776
             P  KK ++LY
Sbjct: 785 IVPNEKKDIDLY 796


>Plasmodium_falciparum_3D7|MAL12|PFL0020w|Pf
            Annotation|Plasmodium_falciparum_Stanford|(protein
            coding) erythrocyte membrane protein 1 (PfEMP1)
          Length = 2860

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 750  EFKKYVELYAKDEELWHKDFAKAFQKLTENG 842
            E+KK++E++ K  E  ++ + + ++K T NG
Sbjct: 1963 EYKKFIEIWKKQFETQNEAYKEIYKKATSNG 1993


>Plasmodium_falciparum_3D7|MAL14|PF14_0593|Pf
            Annotation|Plasmodium_falciparum_TIGR|(protein coding)
            hypothetical protein
          Length = 1357

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 681  EQYTDPTGELMMLPADMAFIWDPEFKKYVELYAKDEELWHKDFAKAFQKLTE 836
            E +  P  EL++    +      E K Y+++Y  +E+ W+ ++ K F KLT+
Sbjct: 988  ENFNFPLDELVLQDIFLNLKGQEELK-YMDIYCANEDSWNSEY-KNFLKLTD 1037


>Plasmodium_falciparum_3D7|MAL6|PFF0480w|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 1902

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 796 HNSSSLAYNSTYFLNSGSQMKAMSAGNIMSSPVGSVYCSGP 674
           HN+++  YN+ Y  +  S +K  +  NI S     ++C  P
Sbjct: 24  HNNNNDNYNNNYTYDENSLVKLTNEYNITSDNGKKLFCRSP 64


>Plasmodium_falciparum_3D7|MAL8|PF08_0117|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 1203

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = -3

Query: 838 FSVSFWKALAKSLCHNSSSLAYNSTYFLNSGSQMKAMSAGNIMSSPVGSVYCSGPFHFFK 659
           F V  W    K           N T   N+         GN+ S  + +++CS PF +  
Sbjct: 331 FDVELWNIFLKK----------NITNHFNTNLYFLTGKIGNMKSVFLNNIFCSFPFLYKN 380

Query: 658 VHLF 647
            H+F
Sbjct: 381 DHMF 384


>Plasmodium_falciparum_3D7|MAL13|MAL13P1.365|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           conserved hypothetical protein
          Length = 441

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 750 EFKKYVELYAKDEELWHKDFAKAFQKLT 833
           EFKKYV+L+ K+E  +  +  K   K++
Sbjct: 345 EFKKYVDLFEKEENTYIIETKKKIAKIS 372


>Plasmodium_falciparum_3D7|MAL7|PF07_0086|Pf
            Annotation|Plasmodium_falciparum_Sanger|(protein coding)
            hypothetical protein
          Length = 3429

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 312  SYADLYVFAGVVAIAEMGGPEVKFHLGRKDAESGAECTPDGRLPDADKGSKPNT 473
            +Y DL++F   +  ++ G   +K H G    +     T +G   + D+G K  T
Sbjct: 1341 TYYDLFLFFCTLLTSKGGDEIIKGHKGIIPTQGDKNETDEGNKNETDEGDKNET 1394


  Database: /home/amadoui/banque/plasm_falciparum
    Posted date:  Mar 30, 2007  3:37 PM
  Number of letters in database: 4,065,673
  Number of sequences in database:  5411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,171,825
Number of Sequences: 5411
Number of extensions: 122263
Number of successful extensions: 380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 4,065,673
effective HSP length: 93
effective length of database: 3,562,450
effective search space used: 826488400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)