BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig1815 NX0AMYA13YF12CM1.SCF NX0AMYA13YJ03CM1.SCF
         (890 letters)

Database: /home/amadoui/banque/plasm_falciparum 
           5411 sequences; 4,065,673 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_falciparum_3D7|MAL12|PFL0595c|Pf Annotation|Plasmodiu...   106   8e-24
Plasmodium_falciparum_3D7|MAL2|PFB0250w|Pf Annotation|Plasmodium...    27   4.8  

>Plasmodium_falciparum_3D7|MAL12|PFL0595c|Pf
           Annotation|Plasmodium_falciparum_Stanford|(protein
           coding) glutathione peroxidase
          Length = 206

 Score =  106 bits (264), Expect = 8e-24
 Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
 Frame = +1

Query: 166 QYRGRVCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIM 345
           +++ +V ++ N AS+ GLT+ +  Q   L  KY  +GLEILAFP +QF  QE    + I 
Sbjct: 61  KFKNKVLIIFNSASKCGLTKNHVEQFNKLHEKYNARGLEILAFPTSQFLNQEFDNTKDIC 120

Query: 346 EFVKTFGITFQFFNKCDVNGDNTVPVFQYLK------HHLSGLLGNFIKWNFTKFLVDRE 507
            F +   I +  F+  +VNGDNT P+F+YLK      H  +G L + I WNF KFLVD+ 
Sbjct: 121 TFNEKNKIKYNMFSPIEVNGDNTHPLFKYLKKNCDSMHDENGTLKS-IGWNFGKFLVDKN 179

Query: 508 GQPFKRYSPQTAPNDFEGDIVELLSK 585
           G+    +SP+T P D E  I++LL K
Sbjct: 180 GEVVNYFSPKTNPLDLEKIIIQLLQK 205


>Plasmodium_falciparum_3D7|MAL2|PFB0250w|Pf
           Annotation|Plasmodium_falciparum_TIGR|(protein coding)
           hypothetical protein
          Length = 635

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 259 KYRNQGLEILAFPCNQFGGQEPGT------NEKIMEFVKTFGITFQFFNK 390
           K  N+ L ++ +P  Q  G++  +      +  +M ++KT  IT+ ++NK
Sbjct: 195 KEENKCLSLMVYPFIQCAGEDDASAIIFISSISLMSYLKTEQITYDYYNK 244


  Database: /home/amadoui/banque/plasm_falciparum
    Posted date:  Mar 30, 2007  3:37 PM
  Number of letters in database: 4,065,673
  Number of sequences in database:  5411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,743,164
Number of Sequences: 5411
Number of extensions: 112030
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 4,065,673
effective HSP length: 92
effective length of database: 3,567,861
effective search space used: 727843644
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)