BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig1251 NX0AMYA11YO17CM1.SCF NX0AMYA6YE11CM1.SCF
NX0AINT4YG07CM1.SCF
         (1121 letters)

Database: /home/amadoui/banque/plasm_falciparum 
           5411 sequences; 4,065,673 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Plasmodium_falciparum_3D7|MAL6|PFF0380w|Pf Annotation|Plasmodium...    31   0.45 
Plasmodium_falciparum_3D7|MAL6|PFF0975c|Pf Annotation|Plasmodium...    30   0.77 
Plasmodium_falciparum_3D7|MAL1|PFA0295c|Pf Annotation|Plasmodium...    29   1.7  
Plasmodium_falciparum_3D7|MAL12|PFL0020w|Pf Annotation|Plasmodiu...    29   2.2  
Plasmodium_falciparum_3D7|MAL14|PF14_0593|Pf Annotation|Plasmodi...    27   6.5  
Plasmodium_falciparum_3D7|MAL8|PF08_0117|Pf Annotation|Plasmodiu...    27   8.5  
Plasmodium_falciparum_3D7|MAL6|PFF0480w|Pf Annotation|Plasmodium...    27   8.5  

>Plasmodium_falciparum_3D7|MAL6|PFF0380w|Pf
            Annotation|Plasmodium_falciparum_Sanger|(protein coding)
            hypothetical protein
          Length = 2753

 Score = 31.2 bits (69), Expect = 0.45
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +3

Query: 753  NEYYRELIENK------WTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYVELYAK 914
            N+YY+  I N          KK+K P+       E + L   + FI++ EF  + ELY +
Sbjct: 1333 NKYYKLYIPNNNLHRTHIQHKKYKTPDNCRIFQKENIHLKNHLDFIYNTEF--FTELYVE 1390

Query: 915  DEELWHKDFAKAFQKLTEN 971
            DE   ++D  ++ Q + +N
Sbjct: 1391 DEYYDNEDTKQSIQPIYDN 1409


>Plasmodium_falciparum_3D7|MAL6|PFF0975c|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 505

 Score = 30.4 bits (67), Expect = 0.77
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +3

Query: 720 GPWTRAEWTFSNEYYRELIENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYV 899
           GP      T S++ Y + I+N    +KW+   +Y  P  +    P +  F+     + Y+
Sbjct: 95  GPDQEKVITLSDKIYIDKIKNIIEYRKWRAKSKYRSPAKQ----PEEDMFV-----EGYI 145

Query: 900 ELYAKDEELW-HKDFAKAFQKLTENGCNLE 986
            +  +D+ L  H+   K F+++ +   +LE
Sbjct: 146 PIKRRDDNLLPHEKAEKDFEEIIQKYVDLE 175


>Plasmodium_falciparum_3D7|MAL1|PFA0295c|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 967

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 19/72 (26%)
 Frame = +3

Query: 750 SNEYYRELIENKWTLKKWKGPEQYT-DPTG------------ELMMLPAD------MAFI 872
           +N YY+E+I NK    K   P  YT DP G            E+  +P+D      ++F 
Sbjct: 725 ANNYYKEVIYNKLHKIKHLRPPNYTYDPKGLITKNGAGTKGIEIFDMPSDINEWNKISFC 784

Query: 873 WDPEFKKYVELY 908
             P  KK ++LY
Sbjct: 785 IVPNEKKDIDLY 796


>Plasmodium_falciparum_3D7|MAL12|PFL0020w|Pf
            Annotation|Plasmodium_falciparum_Stanford|(protein
            coding) erythrocyte membrane protein 1 (PfEMP1)
          Length = 2860

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 882  EFKKYVELYAKDEELWHKDFAKAFQKLTENG 974
            E+KK++E++ K  E  ++ + + ++K T NG
Sbjct: 1963 EYKKFIEIWKKQFETQNEAYKEIYKKATSNG 1993


>Plasmodium_falciparum_3D7|MAL14|PF14_0593|Pf
            Annotation|Plasmodium_falciparum_TIGR|(protein coding)
            hypothetical protein
          Length = 1357

 Score = 27.3 bits (59), Expect = 6.5
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 813  EQYTDPTGELMMLPADMAFIWDPEFKKYVELYAKDEELWHKDFAKAFQKLTE 968
            E +  P  EL++    +      E K Y+++Y  +E+ W+ ++ K F KLT+
Sbjct: 988  ENFNFPLDELVLQDIFLNLKGQEELK-YMDIYCANEDSWNSEY-KNFLKLTD 1037


>Plasmodium_falciparum_3D7|MAL8|PF08_0117|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 1203

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = -2

Query: 970 FSVSFWKALAKSLCHNSSSLAYNSTYFLNSGSQMKAMSAGNIMSSPVGSVYCSGPFHFFK 791
           F V  W    K           N T   N+         GN+ S  + +++CS PF +  
Sbjct: 331 FDVELWNIFLKK----------NITNHFNTNLYFLTGKIGNMKSVFLNNIFCSFPFLYKN 380

Query: 790 VHLF 779
            H+F
Sbjct: 381 DHMF 384


>Plasmodium_falciparum_3D7|MAL6|PFF0480w|Pf
           Annotation|Plasmodium_falciparum_Sanger|(protein coding)
           hypothetical protein
          Length = 1902

 Score = 26.9 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 928 HNSSSLAYNSTYFLNSGSQMKAMSAGNIMSSPVGSVYCSGP 806
           HN+++  YN+ Y  +  S +K  +  NI S     ++C  P
Sbjct: 24  HNNNNDNYNNNYTYDENSLVKLTNEYNITSDNGKKLFCRSP 64


  Database: /home/amadoui/banque/plasm_falciparum
    Posted date:  Mar 30, 2007  3:37 PM
  Number of letters in database: 4,065,673
  Number of sequences in database:  5411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,890,444
Number of Sequences: 5411
Number of extensions: 135321
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 4,065,673
effective HSP length: 94
effective length of database: 3,557,039
effective search space used: 992413881
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)