BLASTX 2.2.9 [May-01-2004] BLASTX 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig211 NX0AINT5YL11CM1.SCF NX0AINT1YD01CM1.SCF NX0AMYA26YM05CM1.SCF NX0AINT1YH11CM1.SCF NX0AINT12YP10CM1.SCF (963 letters) Database: /home/amadoui/banque/phyto_ramorum 16,066 sequences; 7,352,630 total letters Searching.................................done Score E Sequences producing significant alignments: (bits) Value 48282 446 e-126 47152 443 e-125 47114 407 e-114 46973 32 0.35 75959 31 0.77 73577 29 2.9 84802 28 3.8 73687 27 8.5 >48282 Length = 431 Score = 446 bits (1147), Expect = e-126 Identities = 211/320 (65%), Positives = 254/320 (79%) Frame = +1 Query: 1 SFIHTQKRNPATHLKDADMFWDFISLRPETTHQVSFLFSDRGIPDGYRHLNGYGSHTFEN 180 SFIHTQKR P THLKD +M WDF SLRPET HQ +FLFSDRGIPDG+RH+NGYGSHTF N Sbjct: 88 SFIHTQKRLPGTHLKDDNMMWDFFSLRPETLHQQTFLFSDRGIPDGFRHMNGYGSHTFVN 147 Query: 181 VNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGTNPDYAIQDLYEAIARKEYPTWTLYIQ 360 VN QG +YVKYHFKTDQGIRNLPVD A LA ++PDY+I+DLY+AI R+++P+WTLYIQ Sbjct: 148 VNRQGKTTYVKYHFKTDQGIRNLPVDEAAALASSDPDYSIRDLYDAIERQDFPSWTLYIQ 207 Query: 361 VMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEVGKLVLNRNPANYFSDVEQLAFSPAHF 540 MT QA A+ NPFDVTKVWSH +YPL++VG LVLNRNP NYF++VEQLAFSP+H Sbjct: 208 TMTPDQA---AAERVNPFDVTKVWSHSSYPLQQVGCLVLNRNPKNYFAEVEQLAFSPSHM 264 Query: 541 VPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQIPVNQPVQSQPKNYQRDGFMTVNGNQG 720 VPGI+PSPDKMLQGRLFSY DTHRHRLGPNYQQIPVN+P+ ++P+ YQRDGFMTV+GN Sbjct: 265 VPGIEPSPDKMLQGRLFSYPDTHRHRLGPNYQQIPVNKPL-NEPQTYQRDGFMTVDGNMN 323 Query: 721 GAPNYFPNSFNGPDYLANVPEPAKQVSQTVIRRYSSKDEDNFTQAGEFFRNVLTEDERTR 900 APNYFPNS GP + + ++ ++S+ D+DNF+Q G+F+R L R R Sbjct: 324 DAPNYFPNSMGGPLEADTLRYHTYRGDHLIVDKFSTADDDNFSQVGDFYRKTLDAAARER 383 Query: 901 LVNNIASNLINAQPSIQARA 960 L +NIA +L+NA +QARA Sbjct: 384 LTDNIAGSLVNASKPVQARA 403 >47152 Length = 480 Score = 443 bits (1140), Expect = e-125 Identities = 211/320 (65%), Positives = 254/320 (79%) Frame = +1 Query: 1 SFIHTQKRNPATHLKDADMFWDFISLRPETTHQVSFLFSDRGIPDGYRHLNGYGSHTFEN 180 SFIHTQKR P+THLKD DM WDF SLRPET HQ SFLFSDRGIPDG+R +NGYGSHTF N Sbjct: 145 SFIHTQKRLPSTHLKDDDMMWDFFSLRPETLHQQSFLFSDRGIPDGFRFMNGYGSHTFAN 204 Query: 181 VNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGTNPDYAIQDLYEAIARKEYPTWTLYIQ 360 VNA+G +YVKYHFKTDQGIRNLPVD A +LA ++PDYAI+DLYEAIA K+YP+WTLYIQ Sbjct: 205 VNAKGETTYVKYHFKTDQGIRNLPVDKAAELASSDPDYAIRDLYEAIANKQYPSWTLYIQ 264 Query: 361 VMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEVGKLVLNRNPANYFSDVEQLAFSPAHF 540 VMT QA + + NPFDVTK+W H YPL EVG+LVLNRNP+NYF+++EQ+AFSP+H Sbjct: 265 VMTPEQAAK---ESVNPFDVTKIWPHNKYPLIEVGRLVLNRNPSNYFAEIEQIAFSPSHM 321 Query: 541 VPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQIPVNQPVQSQPKNYQRDGFMTVNGNQG 720 VPGI+PSPDKMLQGRLFSY DT RHRLG NY QIPVN+P++ +P+ YQRDGFM VNGN Sbjct: 322 VPGIEPSPDKMLQGRLFSYPDTQRHRLGSNYNQIPVNRPLK-EPQTYQRDGFMVVNGNMH 380 Query: 721 GAPNYFPNSFNGPDYLANVPEPAKQVSQTVIRRYSSKDEDNFTQAGEFFRNVLTEDERTR 900 APNYFPNS NGP + + +++ ++S+ D+DN++Q GEF+R L R R Sbjct: 381 DAPNYFPNSKNGPPEDTARRYHSYRGDHSLVDKFSTHDDDNYSQVGEFYRQTLDAAARER 440 Query: 901 LVNNIASNLINAQPSIQARA 960 L +NIA +L+NA +QARA Sbjct: 441 LTDNIAGSLVNASRPVQARA 460 >47114 Length = 429 Score = 407 bits (1047), Expect = e-114 Identities = 195/319 (61%), Positives = 245/319 (76%) Frame = +1 Query: 1 SFIHTQKRNPATHLKDADMFWDFISLRPETTHQVSFLFSDRGIPDGYRHLNGYGSHTFEN 180 SFIH+QKR P++HLKDA+M WDF SLRPE+ H ++LFSDRGIPDGYR +NGYGS+TF N Sbjct: 88 SFIHSQKRLPSSHLKDANMVWDFFSLRPESLHMQTWLFSDRGIPDGYRFMNGYGSNTFAN 147 Query: 181 VNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGTNPDYAIQDLYEAIARKEYPTWTLYIQ 360 VN +G ++YVKYHFKTDQGIRN+ VD A LAG +PDYA +DLYEAI E+P+WTLYIQ Sbjct: 148 VNVEGEMTYVKYHFKTDQGIRNMSVDEAASLAGADPDYANRDLYEAIEGGEFPSWTLYIQ 207 Query: 361 VMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEVGKLVLNRNPANYFSDVEQLAFSPAHF 540 MT QA++H F FDVTKVW H +PLKEVG+LVLN+NP NYF+++EQLAF+P+H Sbjct: 208 TMTPEQAKKH---KFIAFDVTKVWPHGEFPLKEVGRLVLNKNPRNYFAEIEQLAFAPSHM 264 Query: 541 VPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQIPVNQPVQSQPKNYQRDGFMTVNGNQG 720 VPGI PSPDKMLQGRLFSY DT RHRLG NYQQIPVN+P+ ++P+ YQRDG +VNGN G Sbjct: 265 VPGIAPSPDKMLQGRLFSYPDTLRHRLGKNYQQIPVNRPL-NEPQTYQRDGQFSVNGNMG 323 Query: 721 GAPNYFPNSFNGPDYLANVPEPAKQVSQTVIRRYSSKDEDNFTQAGEFFRNVLTEDERTR 900 AP YFPNS GP + + + +V+ +YSS +DN +Q F+R VL ++ R R Sbjct: 324 DAPMYFPNSMGGPQEVEALRYNKYEGEHSVVDKYSSAYDDNLSQVQVFYRKVLDDEARER 383 Query: 901 LVNNIASNLINAQPSIQAR 957 L +N+A++L+NA +Q R Sbjct: 384 LTDNVATSLVNASMPVQER 402 >46973 Length = 4455 Score = 32.0 bits (71), Expect = 0.35 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = +1 Query: 271 LAGTNPD---YAIQDLYEAIARKEYPTWTLYIQVMTQAQAEQHLAQGFNPFDVTKVWSHK 441 L NPD Y +DL + + WT I+ + Q H A+G P + K W H+ Sbjct: 99 LPPVNPDKFNYKDKDLVQQL-ESTVIHWTRQIKEVINNQDNAHDAEGAGPLEEIKFWEHR 157 Query: 442 TYPLKEV 462 T L + Sbjct: 158 TEDLSGI 164 >75959 Length = 1658 Score = 30.8 bits (68), Expect = 0.77 Identities = 26/90 (28%), Positives = 33/90 (36%) Frame = +1 Query: 451 LKEVGKLVLNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKMLQGRLFSYSDTHRHRLGPN 630 LK K P +D LA S A QPSP + RL + DTH R Sbjct: 953 LKPQSKWAPCSQPQTRNADAPVLASSLA-----TQPSPPLVFLRRLLKFLDTHTERTELE 1007 Query: 631 YQQIPVNQPVQSQPKNYQRDGFMTVNGNQG 720 + P ++ S + G T G QG Sbjct: 1008 LLRFPTSEATSSLSDKRKFVGIGTSGGGQG 1037 >73577 Length = 951 Score = 28.9 bits (63), Expect = 2.9 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Frame = +1 Query: 631 YQQIPVNQPVQSQPKNYQRDGFM-TVNGNQGGAPNYFPNSFNGPDYLANVPEPA 789 YQQ P Q QP YQ+ G+ G G P + + D N P P+ Sbjct: 113 YQQYPPPPQDQYQPPQYQQQGYADDSRGGYNGNPPPVADRYQPMDNFQNQPPPS 166 >84802 Length = 974 Score = 28.5 bits (62), Expect = 3.8 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 403 FNPFDVTKVWSHKTYPLKEVGKLV---LNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKM 573 F + VT SHK YPL E+ L+ ++ +P + D+E +P + G +P+P+++ Sbjct: 206 FGGYTVTS--SHKDYPLVEMTPLIAPGVDASPLMTWGDIEG---TPT--ILGSRPTPERI 258 Query: 574 LQGRLFSYSDTHR 612 + F D R Sbjct: 259 MNTPSFELRDKSR 271 >73687 Length = 500 Score = 27.3 bits (59), Expect = 8.5 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 498 LQRRGAIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPTDPSESTSAEPTQE 677 L R A+ L L ++ A DASR + HAS P +P+ P+ T+ E Sbjct: 63 LSRDEALQALQPHLNEFNAQLAALDASRQPIEAFAHASLPDVLMIPSSPNGDTTVAFNPE 122 Query: 678 LST 686 L + Sbjct: 123 LKS 125 Database: /home/amadoui/banque/phyto_ramorum Posted date: Mar 30, 2007 3:39 PM Number of letters in database: 7,352,630 Number of sequences in database: 16,066 Lambda K H 0.317 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,258,868 Number of Sequences: 16066 Number of extensions: 294881 Number of successful extensions: 1051 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1042 length of database: 7,352,630 effective HSP length: 96 effective length of database: 5,810,294 effective search space used: 1301505856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)