BLASTX 2.2.9 [May-01-2004] BLASTX 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig1967 NX0AMYA15YP09CM1.SCF NX0AMYA16YJ14CM1.SCF (978 letters) Database: /home/amadoui/banque/phyto_ramorum 16,066 sequences; 7,352,630 total letters Searching.................................done Score E Sequences producing significant alignments: (bits) Value 38640 367 e-102 73140 111 4e-25 77036 105 3e-23 86067 100 1e-21 73141 87 1e-17 51170 67 1e-11 80301 28 5.1 75050 27 8.7 >38640 Length = 254 Score = 367 bits (942), Expect = e-102 Identities = 170/251 (67%), Positives = 201/251 (80%), Gaps = 3/251 (1%) Frame = +3 Query: 114 EKDNYLGPTLVRLAWHSSGTYXXXXXXXXXXXX-TIRFDPEINHGANAGLNTAVDKLEAI 290 ++DNY+GPT+VRLAWHSSG+Y TIR DPEINHG NAGL+ AV LE + Sbjct: 2 DEDNYMGPTMVRLAWHSSGSYSKERGGSGGSTGGTIRLDPEINHGGNAGLHLAVKALEKV 61 Query: 291 KERYPNISYADLYVFAGVVAIAEMGGPEVKFHLGRKDAESGAECT--PDGRLPDADKGSK 464 K+ +P ISYADLY+ AGV I EMGGPE+ F LGR DA+SG E T PD RLP+AD G+K Sbjct: 62 KKNHPEISYADLYILAGVTMIEEMGGPEIPFRLGRPDAKSGKEPTQTPDDRLPNADMGTK 121 Query: 465 PNTINHVREIFYRMGFNDREIVALIGAHAVGRCYPTRSGYSGPWTRAEWTFSNEYYRELI 644 T HVR++FYRMGF+DR+IVAL+GAHA+GRCYPTRSGYSGPWT AEWTFSNE++REL+ Sbjct: 122 DKTTQHVRDVFYRMGFDDRDIVALVGAHAIGRCYPTRSGYSGPWTNAEWTFSNEFFRELL 181 Query: 645 ENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYVELYAKDEELWHKDFAKAFQ 824 ENKWT+KKW GP QY DPTG+LMMLPAD+ I DP+FKKYVELYAKDE+LW KDF+KAF Sbjct: 182 ENKWTVKKWNGPMQYEDPTGKLMMLPADLVLIQDPQFKKYVELYAKDEDLWFKDFSKAFV 241 Query: 825 KLTENGCHLEK 857 KLTENG ++ Sbjct: 242 KLTENGVKFQE 252 >73140 Length = 687 Score = 111 bits (278), Expect = 4e-25 Identities = 81/265 (30%), Positives = 121/265 (45%), Gaps = 13/265 (4%) Frame = +3 Query: 75 DLPKIRSEIVSLIEKD-------------NYLGPTLVRLAWHSSGTYXXXXXXXXXXXXT 215 D +RS+I SL+ K Y G V AW + T+ Sbjct: 421 DFDAVRSDIRSLLTKSVDGLTSDSSSDGTPYNGALFVHAAWQCASTFRITDYAGGCNGAK 480 Query: 216 IRFDPEINHGANAGLNTAVDKLEAIKERYPNISYADLYVFAGVVAIAEMGGPEVKFHLGR 395 IRF P+ + NAG++ + LE +KE YP +S ADL V AG VA+ + G + F GR Sbjct: 481 IRFSPQKDWPVNAGVDKIISALEPVKESYPTLSTADLIVLAGQVALEDAGNVTIDFLGGR 540 Query: 396 KDAESGAECTPDGRLPDADKGSKPNTINHVREIFYRMGFNDREIVALIGAHAVGRCYPTR 575 DAE+G +G A + T+ VR+ +G + E VAL G Sbjct: 541 TDAENG-----NGDEILAPREYYNTTLIAVRDNIRILGVSPYEAVALAGRPRSVE-QQKA 594 Query: 576 SGYSGPWTRAEWTFSNEYYRELIENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEF 755 GYSG ++ T SNEY++ L+ WT +Y + ML D+A + PE Sbjct: 595 LGYSGSYSNNSLTLSNEYFQVLLNETWT---EVSAAEYQAEGKNVFMLDTDLALLAAPEL 651 Query: 756 KKYVELYAKDEELWHKDFAKAFQKL 830 K+ V+L+A +E ++ F+ A+ K+ Sbjct: 652 KEAVQLFASEENVFKAVFSSAWAKV 676 Score = 106 bits (265), Expect = 1e-23 Identities = 90/309 (29%), Positives = 134/309 (43%), Gaps = 74/309 (23%) Frame = +3 Query: 126 YLGPTLVRLAWHSSGTYXXXXXXXXXXXXTIRFDPEINHGANAGLNTAVDKLEAIKERYP 305 + G +RLAWH +G+Y IRF+PE + N L+ A+D LE IK +Y Sbjct: 80 HYGGLFIRLAWHCNGSYRRADGRGGCDGGRIRFNPERSWADNTNLDKALDLLEPIKLKYG 139 Query: 306 N-ISYADLYVFAGVVAIAEMGGPEVKFHLGRKD---------------AESGAECTPDGR 437 + +S+ DL V +G VAI MGGP + F GR+D ES A C DG+ Sbjct: 140 DALSWGDLIVLSGDVAIESMGGPVLGFCGGRRDDADGTSSLQLGPTPEQESVAPCAVDGQ 199 Query: 438 L---------------PDADKG--SKPNTINHVREIFYRMGFNDREIVALI-GAHAVGRC 563 P+ G +++ VR+ F RMG NDRE VALI G HA G+ Sbjct: 200 CKEPLGPTTMGLIYVNPEGPMGVPDPALSVHDVRDTFERMGMNDRETVALIGGGHAFGKT 259 Query: 564 Y----------PTR------------------------SGYSGPWTRAEWTFSNEYYREL 641 + PT+ SG+ G W+ + N Y++ L Sbjct: 260 HGACPTGPGPDPTQDPLSPWPGTCGEGAMKGKGNNTFTSGFEGAWSFTPTQWGNGYFKGL 319 Query: 642 IENKWTLKKWKGPEQYT------DPTGELMMLPADMAFIWDPEFKKYVELYAKDEELWHK 803 +W +K+ GP + D T + ML AD+A + D + +A + ++ Sbjct: 320 TGLEW--EKFDGPGGHVQWRPVPDTTPPVRMLTADIALLHDASYHNISLEFASNLTALNE 377 Query: 804 DFAKAFQKL 830 +F+ A+ KL Sbjct: 378 EFSHAWYKL 386 >77036 Length = 686 Score = 105 bits (261), Expect = 3e-23 Identities = 90/309 (29%), Positives = 127/309 (41%), Gaps = 74/309 (23%) Frame = +3 Query: 126 YLGPTLVRLAWHSSGTYXXXXXXXXXXXXTIRFDPEINHGANAGLNTAVDKLEAIKERYP 305 + G +RLAWH +G+Y IRF+PE + N L+ A+ L IKE+Y Sbjct: 80 HYGGLFIRLAWHCNGSYRRADGRGGCDGGRIRFNPEHSWADNTNLDKALKLLNPIKEKYG 139 Query: 306 N-ISYADLYVFAGVVAIAEMGGPEVKFHLGRKDAESG---------------AECTPDGR 437 + +S+ DL V +G VAI MGGP + F GR+D G A C DG+ Sbjct: 140 DALSWGDLVVLSGDVAIKSMGGPVLGFCGGRRDDADGTSSLQLGPTPEQEAVAPCAVDGQ 199 Query: 438 L---------------PDADKGSKPNTIN--HVREIFYRMGFNDREIVALI-GAHAVGRC 563 P+ G ++ VR+ F RMG NDRE VALI G HA G+ Sbjct: 200 CKEPLGPTTMGLIYVNPEGPMGVPDPALSVLDVRDTFKRMGMNDRETVALIGGGHAFGKT 259 Query: 564 Y---PT-------------------------------RSGYSGPWTRAEWTFSNEYYREL 641 + PT SG+ G WT + N Y++ L Sbjct: 260 HGACPTGPGPSPLEDPENPWPGTCGEGEMKGKGNNTFTSGFEGSWTFTPTKWGNGYFKGL 319 Query: 642 IENKWTLKKWKGPEQYT------DPTGELMMLPADMAFIWDPEFKKYVELYAKDEELWHK 803 W +K+ GP + D + ML AD+A + DP + +A D+ Sbjct: 320 TTLDW--EKFDGPGGHVQWRPVPDTNPPVRMLTADIALLHDPSYHSISLEFAADQAALDD 377 Query: 804 DFAKAFQKL 830 F+ A+ KL Sbjct: 378 AFSHAWYKL 386 Score = 104 bits (259), Expect = 6e-23 Identities = 80/261 (30%), Positives = 122/261 (46%), Gaps = 13/261 (4%) Frame = +3 Query: 87 IRSEIVSLIEKD-------------NYLGPTLVRLAWHSSGTYXXXXXXXXXXXXTIRFD 227 +RS+I L++K Y G V A+ + T+ IRF Sbjct: 425 VRSDIRKLLKKSVEGLTSDSSADGTPYNGALFVHAAYQCASTFRITDYAGGCNGAKIRFS 484 Query: 228 PEINHGANAGLNTAVDKLEAIKERYPNISYADLYVFAGVVAIAEMGGPEVKFHLGRKDAE 407 P+ + NAG+++ + LE IK+ YP++S ADL V AG VA+ E G + KF GR DAE Sbjct: 485 PQKDWPVNAGVDSIITALEPIKKSYPSLSTADLLVLAGQVALQE-AGVKTKFLGGRTDAE 543 Query: 408 SGAECTPDGRLPDADKGSKPNTINHVREIFYRMGFNDREIVALIGAHAVGRCYPTRSGYS 587 +G +G A + T V++ +G + +E VAL G GYS Sbjct: 544 NG-----EGDDILAPREYYNTTAIAVQDNIKILGVSGQEAVALAG-RPRSVAQQKALGYS 597 Query: 588 GPWTRAEWTFSNEYYRELIENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEFKKYV 767 G ++ +N+Y+ L+ WT K +Y +L ML D+A + PE KK V Sbjct: 598 GSYSNCSEALTNDYFNVLLNETWTPVSAK---EYKAEGKDLFMLDTDLALLEVPELKKAV 654 Query: 768 ELYAKDEELWHKDFAKAFQKL 830 EL+A + + + FA A+ K+ Sbjct: 655 ELFASSDHAFKQVFASAWAKV 675 >86067 Length = 225 Score = 100 bits (248), Expect = 1e-21 Identities = 68/205 (33%), Positives = 103/205 (50%) Frame = +3 Query: 216 IRFDPEINHGANAGLNTAVDKLEAIKERYPNISYADLYVFAGVVAIAEMGGPEVKFHLGR 395 IRF P+ + NAG++ + LE +KE YP +S ADL V AG VA+ + G + F GR Sbjct: 19 IRFSPQKDWPVNAGVDKIISALEPVKESYPTLSTADLIVLAGQVALEDAGNVTIDFLGGR 78 Query: 396 KDAESGAECTPDGRLPDADKGSKPNTINHVREIFYRMGFNDREIVALIGAHAVGRCYPTR 575 DAE+G +G A + T+ VR+ +G + E VAL G Sbjct: 79 TDAENG-----NGDEILAPREYYNTTLIAVRDNIRILGVSPYEAVALAGRPRSVE-QQKA 132 Query: 576 SGYSGPWTRAEWTFSNEYYRELIENKWTLKKWKGPEQYTDPTGELMMLPADMAFIWDPEF 755 GYSG ++ T SNEY++ L+ WT +Y + ML D+A + PE Sbjct: 133 LGYSGSYSNNSLTLSNEYFQVLLNETWT---EVSAAEYQAEGKNVFMLDTDLALLAAPEL 189 Query: 756 KKYVELYAKDEELWHKDFAKAFQKL 830 K+ V+L+A +E ++ F+ A+ K+ Sbjct: 190 KEAVQLFASEENVFKAVFSSAWAKV 214 >73141 Length = 438 Score = 86.7 bits (213), Expect = 1e-17 Identities = 61/172 (35%), Positives = 82/172 (47%), Gaps = 33/172 (19%) Frame = +3 Query: 126 YLGPTLVRLAWHSSGTYXXXXXXXXXXXXTIRFDPEINHGANAGLNTAVDKLEAIKERYP 305 + G +RLAWH +G+Y IRF+PE + N L+ A+D LE IK +Y Sbjct: 80 HYGGLFIRLAWHCNGSYRRADGRGGCDGGRIRFNPERSWADNTNLDKALDLLEPIKLKYG 139 Query: 306 N-ISYADLYVFAGVVAIAEMGGPEVKFHLGRKD---------------AESGAECTPDGR 437 + +S+ DL V +G VAI MGGP + F GR+D ES A C DG+ Sbjct: 140 DALSWGDLIVLSGDVAIESMGGPVLGFCGGRRDDADGTSSLQLGPTPEQESVAPCAVDGQ 199 Query: 438 L---------------PDADKG--SKPNTINHVREIFYRMGFNDREIVALIG 542 P+ G +++ VR+ F RMG NDRE VALIG Sbjct: 200 CKEPLGPTTMGLIYVNPEGPMGVPDPALSVHDVRDTFERMGMNDRETVALIG 251 >51170 Length = 124 Score = 67.0 bits (162), Expect = 1e-11 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = +3 Query: 126 YLGPTLVRLAWHSSGTYXXXXXXXXXXXXTIRFDPEINHGANAGLNTAVDKLEAIKERYP 305 + G +RLAWH +G+Y IRF+PE + N L+ A+ L IKE+Y Sbjct: 32 HYGGLFIRLAWHCNGSYRRADGRGGCDGGRIRFNPEHSWADNTNLDKALKLLNPIKEKYG 91 Query: 306 N-ISYADLYVFAGVVAIAEMGGPEVKFHLGRKD 401 + +S+ DL V +G VAI MGGP + F GR+D Sbjct: 92 DALSWGDLVVLSGDVAIKSMGGPVLGFCGGRRD 124 >80301 Length = 230 Score = 28.1 bits (61), Expect = 5.1 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +1 Query: 262 TRLLTSSKRSRNATPTFPTLICMCSLVLSP-LPKW 363 + +L +R R+ P PT+ C+CS + P LP+W Sbjct: 14 SEVLALLERHRSRAPRLPTM-CLCSFNIQPFLPQW 47 >75050 Length = 2044 Score = 27.3 bits (59), Expect = 8.7 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -2 Query: 155 RQADQSRSQVVVLFNQADNFRANLGEVHGLILGL 54 R D++R + V+ N +F + ++HG+ LGL Sbjct: 106 RDVDRARRDLQVMANAVTHFESRSSQLHGVPLGL 139 Database: /home/amadoui/banque/phyto_ramorum Posted date: Mar 30, 2007 3:39 PM Number of letters in database: 7,352,630 Number of sequences in database: 16,066 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,263,149 Number of Sequences: 16066 Number of extensions: 286958 Number of successful extensions: 873 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 7,352,630 effective HSP length: 96 effective length of database: 5,810,294 effective search space used: 1330557326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)