BLASTX 2.2.9 [May-01-2004] BLASTX 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig1815 NX0AMYA13YF12CM1.SCF NX0AMYA13YJ03CM1.SCF (890 letters) Database: /home/amadoui/banque/phyto_ramorum 16,066 sequences; 7,352,630 total letters Searching.................................done Score E Sequences producing significant alignments: (bits) Value 42015 178 1e-47 42013 182 4e-47 75058 143 7e-35 75982 91 6e-19 39250 76 1e-14 47446 70 8e-13 74995 31 0.53 49394 31 0.53 72863 29 2.0 79592 29 2.0 80179 29 2.6 85079 28 3.5 84992 28 3.5 74783 28 4.5 73342 28 5.9 76814 28 5.9 74254 27 7.7 76527 27 7.7 78763 27 7.7 >42015 Length = 157 Score = 178 bits (451), Expect(2) = 1e-47 Identities = 84/138 (60%), Positives = 102/138 (73%) Frame = +1 Query: 166 QYRGRVCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIM 345 +Y+G+V L VNV+S+ GLT NY +L L KY +GLE+LAFPCNQF GQEPGT+++I+ Sbjct: 20 KYKGKVVLAVNVSSKCGLTPTNYPELQQLHEKYHAEGLEVLAFPCNQFAGQEPGTHDEIL 79 Query: 346 EFVKTFGITFQFFNKCDVNGDNTVPVFQYLKHHLSGLLGNFIKWNFTKFLVDREGQPFKR 525 EFVK + +TF FF K DVNG PVF YLK L G GNF+KWNFTKFLVDR GQPFKR Sbjct: 80 EFVKQYNVTFPFFEKHDVNGATARPVFTYLKTKLPGSFGNFVKWNFTKFLVDRNGQPFKR 139 Query: 526 YSPQTAPNDFEGDIVELL 579 ++P+ P FE DI LL Sbjct: 140 FAPKDLPLSFEEDIKTLL 157 Score = 29.6 bits (65), Expect(2) = 1e-47 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +2 Query: 104 KSFFELSAVDMAGQTVPMSKY 166 KSF+EL DMAG V M+KY Sbjct: 1 KSFYELKDFDMAGNEVSMAKY 21 >42013 Length = 165 Score = 182 bits (462), Expect(2) = 4e-47 Identities = 87/139 (62%), Positives = 104/139 (74%) Frame = +1 Query: 166 QYRGRVCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIM 345 +Y+G+V LVVNV+S+ GLT NY +L L KY+ +GL +LAFPCNQF QEPGT+E+I+ Sbjct: 27 EYKGKVVLVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVVLAFPCNQFKSQEPGTHEEIL 86 Query: 346 EFVKTFGITFQFFNKCDVNGDNTVPVFQYLKHHLSGLLGNFIKWNFTKFLVDREGQPFKR 525 EFVK + +TF FF K DVNG N PVF YLK L G GNF+KWNFTKFLVDR GQPFKR Sbjct: 87 EFVKQYNVTFPFFEKHDVNGSNARPVFTYLKAKLPGSFGNFVKWNFTKFLVDRNGQPFKR 146 Query: 526 YSPQTAPNDFEGDIVELLS 582 Y+P P FE DI ELL+ Sbjct: 147 YAPTDLPLSFEEDIKELLA 165 Score = 23.5 bits (49), Expect(2) = 4e-47 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = +2 Query: 98 KAKSFFELSAVDMAGQTVPMSKY 166 +AK+F+EL DM + V M +Y Sbjct: 6 EAKTFYELKDFDMDKKEVSMEEY 28 >75058 Length = 206 Score = 143 bits (361), Expect = 7e-35 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%) Frame = +1 Query: 181 VCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIMEFVK- 357 V LVVNVAS G T NY +L L KY ++G +L FPCNQFG QEPGT E+I++F + Sbjct: 48 VILVVNVASDCGYTDKNYRELQDLYEKYHDEGFTVLGFPCNQFGAQEPGTAEEILKFTRE 107 Query: 358 TFGITFQFFNKCDVNGDNTVPVFQYLKHHLSGLLGNFIKWNFTKFLVDREGQPFKRYSPQ 537 + +TF F K DVNGDN P+F++LK L G + N IKWNFTKFL+ +PFKRY Sbjct: 108 KYHVTFPLFTKVDVNGDNAHPLFKFLKKQLDGFVTNDIKWNFTKFLIVNH-EPFKRYGTT 166 Query: 538 TAPNDFEGDIVELL 579 T+P++ E DIV+ L Sbjct: 167 TSPSEIENDIVQTL 180 >75982 Length = 559 Score = 90.9 bits (224), Expect = 6e-19 Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 6/142 (4%) Frame = +1 Query: 172 RGRVCLVVNVASQ*GLTQLN-YTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKI-M 345 RG V L+ NV S G + +T+L L AKY ++ L+++AFP QFG E +E++ Sbjct: 411 RGHVALLTNVPSDSGANNVEQFTELVELVAKYESE-LKVVAFPSAQFGDAEFSNDEELGA 469 Query: 346 EFVKTFGITFQFFNKCDVNGDNTVPVFQYLKHHLSGLL----GNFIKWNFTKFLVDREGQ 513 +TFG++F DVNG N + K L+G +FI+ NF KFLV R+G+ Sbjct: 470 HLQQTFGVSFPVLATRDVNGPNAREALLFCKTQLTGATESAANSFIEDNFVKFLVGRDGR 529 Query: 514 PFKRYSPQTAPNDFEGDIVELL 579 P KRY P P+ E DI LL Sbjct: 530 PVKRYGPYAMPSSLETDIQRLL 551 >39250 Length = 142 Score = 76.3 bits (186), Expect = 1e-14 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 6/143 (4%) Frame = +1 Query: 169 YRGRVCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIME 348 +R + LVVN AS+ + QL L Y ++GL +LA P N F GQEPG+ E+++ Sbjct: 3 FRFKAALVVNTASKCSHSA-QLKQLQTLHETYSDRGLVVLAVPSNDFAGQEPGSPEEMLN 61 Query: 349 FVKTFGITFQFFNKCDVNGDNTVPVFQYLKHHLSGLLGNF----IKWNFTKFLVDREGQP 516 FG+TF +K V GD P F+ + GLL F +WNF KFLV+ G Sbjct: 62 RYADFGVTFPVAHKTAVTGDKAHPFFKKIAD--KGLLMMFCSVGCRWNFDKFLVNHRGDM 119 Query: 517 FKRYSPQTAPNDFE--GDIVELL 579 + T P + E +I E+L Sbjct: 120 RAVFPNDTEPLEKEVIAEIEEVL 142 >47446 Length = 200 Score = 70.5 bits (171), Expect = 8e-13 Identities = 50/156 (32%), Positives = 71/156 (45%), Gaps = 33/156 (21%) Frame = +1 Query: 169 YRGRVCLVVNVASQ*GLTQLNYTQLAALDAKYRNQGLEILAFPCNQFGGQEPGTNEKIME 348 Y G+ L+VNVAS T Y QL L ++ L ++ PCNQFG QE ++I + Sbjct: 27 YAGKPILIVNVASHCNSTTKAYVQLNDLAKRFPE--LLVIGCPCNQFGHQENLNGDEIYQ 84 Query: 349 FV------KTFGITFQFFNKCDVNGDNTVPVFQYLKHHL---------------SGLLGN 465 + K F FQ K +VNG N +F +L+ L SG+ + Sbjct: 85 SLRHIRPGKGFEPAFQLTEKVEVNGANAHAIFNFLRITLPYPCDRSLLDEMSTPSGVFSH 144 Query: 466 ------------FIKWNFTKFLVDREGQPFKRYSPQ 537 + WNF KFL+ +G P+KRYSP+ Sbjct: 145 PMRLIWMPVTRADVSWNFEKFLISPDGTPYKRYSPK 180 >74995 Length = 1094 Score = 31.2 bits (69), Expect = 0.53 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = +2 Query: 530 VPRPPPTTSKATLSSSCPNK--RPGKNPRRKPS 622 VPRPP ++ SSS PN+ RPG R++PS Sbjct: 512 VPRPPASSPHPPTSSSRPNQRSRPGSPARQQPS 544 >49394 Length = 440 Score = 31.2 bits (69), Expect = 0.53 Identities = 16/61 (26%), Positives = 32/61 (52%) Frame = -3 Query: 270 IAVFRIKSGELSVVELRQASLRRDVHNKTDAATVLYLLIGTVWPAISTADNSKNDLALVG 91 +A + +K+G + L+ +L++DV + +L ++ + WPA+S D L + G Sbjct: 62 LAAYMVKTGGRLIPPLKLETLQKDVPRQMQ---ILEDILQSTWPAVSAPDPDAEGLGVPG 118 Query: 90 S 88 S Sbjct: 119 S 119 >72863 Length = 929 Score = 29.3 bits (64), Expect = 2.0 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -3 Query: 531 TVSLERLALAIDEELGKVPLDKVAQESREV---VLQVLKHWHRVVAIDITLVEELKRDAK 361 T +RL + E+ +V L + E V L V H ++V LVEELKRD + Sbjct: 441 TKETQRLVTRVHEK--EVELANLQNEMARVGVDALNVQNHTAQLVEAQRALVEELKRDDQ 498 Query: 360 RLDKFHDLFVRAR 322 R+++ +L +R R Sbjct: 499 RVER-AELEIRQR 510 >79592 Length = 535 Score = 29.3 bits (64), Expect = 2.0 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = -3 Query: 549 VGGGLGTVSLERLALAIDEELGKVPLDKVAQESREVVLQVLKHWHRVVAIDITLVEELKR 370 VGG LE A + +LGK + A ++RE +Q+L H D+ V+E + Sbjct: 39 VGGDATAAELEDEAFVLQSDLGKA---QAAAKAREAEMQLLTAKHEKAIRDLMRVDEFWQ 95 Query: 369 DAKR 358 +K+ Sbjct: 96 LSKQ 99 >80179 Length = 588 Score = 28.9 bits (63), Expect = 2.6 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +3 Query: 420 SVSVPEAPPLGTPGQLYQVELYQV--PRRSRGPTVQAIQSPDRPQRLRRRHCRALVQTSA 593 + S PE P G PG + + PRR + + PQ+LR H R + T+ Sbjct: 350 ATSFPEPTPHGRPGATSMQDSLMLLRPRRRHSSYKEPSSTESTPQKLRNNHSR-IFDTAE 408 Query: 594 QG 599 +G Sbjct: 409 EG 410 >85079 Length = 908 Score = 28.5 bits (62), Expect = 3.5 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 438 LQVLKHWHRVVAIDITLVEELKRDAKRL 355 LQ L++WHR + +D V EL+R+ R+ Sbjct: 42 LQTLENWHRALTVD---VRELRREGARV 66 >84992 Length = 488 Score = 28.5 bits (62), Expect = 3.5 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +2 Query: 308 LEVKNRARTKRSWNLSRRLASRFNSSTSVMSMATTRCQCFST 433 L N+ K WNL + L SRF S S+ SM T + ST Sbjct: 392 LNYYNQMNLKTKWNLIKTLTSRFGDS-SLSSMLTAAAKVPST 432 >74783 Length = 714 Score = 28.1 bits (61), Expect = 4.5 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 204 RDVHNKTDAATVLYLLIGTVWPAISTADNSKNDL 103 RD+ +K+D VLY+ G W + + K+DL Sbjct: 33 RDIISKSDPFAVLYVKNGAGWTKLGKTEAKKDDL 66 >73342 Length = 2501 Score = 27.7 bits (60), Expect = 5.9 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%) Frame = -3 Query: 147 VWPAISTADNSKNDLA---LVGSSPLD*LDAR--RPNRDQRDMIRPV 22 VW +I+T DNS N + + G +PL+ L+A RP R +++PV Sbjct: 822 VWQSITTGDNSWNQGSTGVITGGTPLNPLEADTFRPIALARAILQPV 868 >76814 Length = 311 Score = 27.7 bits (60), Expect = 5.9 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 514 PFKRYSPQTAPNDFEGDIVELLSKQAP 594 P KR Q AP F D+V LLS P Sbjct: 141 PAKREEAQAAPKPFNNDLVGLLSDPVP 167 >74254 Length = 529 Score = 27.3 bits (59), Expect = 7.7 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -3 Query: 171 VLYLLIGTVWPAISTAD 121 V+Y+L+G +WP ST D Sbjct: 55 VVYMLVGVIWPLQSTTD 71 >76527 Length = 645 Score = 27.3 bits (59), Expect = 7.7 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 2/95 (2%) Frame = -3 Query: 678 VDDARFQLDNARHHXXXXXXXXXXXXXXXXXXGQELDNVAFEVVGGGLGTVSLERLALAI 499 +DD RFQ+DN EL + V G GT +ERL Sbjct: 234 MDDIRFQIDN----QTAAFSVTSAAKDLAAIIDYELSDQDVYVYGLSYGTYLVERLVHFA 289 Query: 498 DEELGKVPLDKVAQESREVV--LQVLKHWHRVVAI 400 + + +D + ES + V +W V I Sbjct: 290 PQSVRGFSVDGIVSESGDTVEKRSTFSNWDHDVGI 324 >78763 Length = 221 Score = 27.3 bits (59), Expect = 7.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +2 Query: 536 RPPPTTSKATLSSSCPNKRPGKNPRRKPS 622 R PT+ + NK+PGK P RK S Sbjct: 53 REKPTSGRKGRKEKGKNKKPGKGPTRKDS 81 Database: /home/amadoui/banque/phyto_ramorum Posted date: Mar 30, 2007 3:39 PM Number of letters in database: 7,352,630 Number of sequences in database: 16,066 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,726,688 Number of Sequences: 16066 Number of extensions: 245411 Number of successful extensions: 957 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 951 length of database: 7,352,630 effective HSP length: 95 effective length of database: 5,826,360 effective search space used: 1171098360 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)