BLASTX 2.2.9 [May-01-2004] BLASTX 2.2.9 [May-01-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Contig1160 NX0AINT3YA24CM1.SCF NX0AINT26YO23CM1.SCF NX0AINT22YN24CM1.SCF (985 letters) Database: /home/amadoui/banque/phyto_ramorum 16,066 sequences; 7,352,630 total letters Searching.................................done Score E Sequences producing significant alignments: (bits) Value 48282 467 e-132 47152 465 e-131 47114 431 e-121 46973 32 0.36 75959 31 0.80 84802 28 4.0 73577 27 8.8 73687 27 8.8 84204 27 8.8 >48282 Length = 431 Score = 467 bits (1202), Expect = e-132 Identities = 220/319 (68%), Positives = 257/319 (80%) Frame = +1 Query: 1 YTEEGNWDLVGNNTPIFFLRDPILFPSFIHTQKRNPATHLKDADMFWDFISLRPETTHQV 180 YTEEGNWDLVGNNTPIFF+RDPILFPSFIHTQKR P THLKD +M WDF SLRPET HQ Sbjct: 62 YTEEGNWDLVGNNTPIFFIRDPILFPSFIHTQKRLPGTHLKDDNMMWDFFSLRPETLHQQ 121 Query: 181 SFLFSDRGIPDGYRHLNGYGSHTFENVNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGT 360 +FLFSDRGIPDG+RH+NGYGSHTF NVN QG +YVKYHFKTDQGIRNLPVD A LA + Sbjct: 122 TFLFSDRGIPDGFRHMNGYGSHTFVNVNRQGKTTYVKYHFKTDQGIRNLPVDEAAALASS 181 Query: 361 NPDYAIQDLYEAIARKEYPTWTLYIQVMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEV 540 +PDY+I+DLY+AI R+++P+WTLYIQ MT QA A+ NPFDVTKVWSH +YPL++V Sbjct: 182 DPDYSIRDLYDAIERQDFPSWTLYIQTMTPDQA---AAERVNPFDVTKVWSHSSYPLQQV 238 Query: 541 GKLVLNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQI 720 G LVLNRNP NYF++VEQLAFSP+H VPGI+PSPDKMLQGRLFSY DTHRHRLGPNYQQI Sbjct: 239 GCLVLNRNPKNYFAEVEQLAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGPNYQQI 298 Query: 721 PVNQPVQSQPKNYQRDGFMTVNGNQGGAPNYFPNSFNGPDYLAHVPDPAKQVSQTVIPSL 900 PVN+P+ ++P+ YQRDGFMTV+GN APNYFPNS GP + + ++ Sbjct: 299 PVNKPL-NEPQTYQRDGFMTVDGNMNDAPNYFPNSMGGPLEADTLRYHTYRGDHLIVDKF 357 Query: 901 SSKDENNFTQAGQILPNVL 957 S+ D++NF+Q G L Sbjct: 358 STADDDNFSQVGDFYRKTL 376 >47152 Length = 480 Score = 465 bits (1197), Expect = e-131 Identities = 219/319 (68%), Positives = 258/319 (80%) Frame = +1 Query: 1 YTEEGNWDLVGNNTPIFFLRDPILFPSFIHTQKRNPATHLKDADMFWDFISLRPETTHQV 180 YTEEGNWDLVGNNTPIFF+RDPILFPSFIHTQKR P+THLKD DM WDF SLRPET HQ Sbjct: 119 YTEEGNWDLVGNNTPIFFIRDPILFPSFIHTQKRLPSTHLKDDDMMWDFFSLRPETLHQQ 178 Query: 181 SFLFSDRGIPDGYRHLNGYGSHTFENVNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGT 360 SFLFSDRGIPDG+R +NGYGSHTF NVNA+G +YVKYHFKTDQGIRNLPVD A +LA + Sbjct: 179 SFLFSDRGIPDGFRFMNGYGSHTFANVNAKGETTYVKYHFKTDQGIRNLPVDKAAELASS 238 Query: 361 NPDYAIQDLYEAIARKEYPTWTLYIQVMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEV 540 +PDYAI+DLYEAIA K+YP+WTLYIQVMT QA + + NPFDVTK+W H YPL EV Sbjct: 239 DPDYAIRDLYEAIANKQYPSWTLYIQVMTPEQAAK---ESVNPFDVTKIWPHNKYPLIEV 295 Query: 541 GKLVLNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQI 720 G+LVLNRNP+NYF+++EQ+AFSP+H VPGI+PSPDKMLQGRLFSY DT RHRLG NY QI Sbjct: 296 GRLVLNRNPSNYFAEIEQIAFSPSHMVPGIEPSPDKMLQGRLFSYPDTQRHRLGSNYNQI 355 Query: 721 PVNQPVQSQPKNYQRDGFMTVNGNQGGAPNYFPNSFNGPDYLAHVPDPAKQVSQTVIPSL 900 PVN+P++ +P+ YQRDGFM VNGN APNYFPNS NGP + + +++ Sbjct: 356 PVNRPLK-EPQTYQRDGFMVVNGNMHDAPNYFPNSKNGPPEDTARRYHSYRGDHSLVDKF 414 Query: 901 SSKDENNFTQAGQILPNVL 957 S+ D++N++Q G+ L Sbjct: 415 STHDDDNYSQVGEFYRQTL 433 >47114 Length = 429 Score = 431 bits (1107), Expect = e-121 Identities = 207/322 (64%), Positives = 249/322 (77%) Frame = +1 Query: 1 YTEEGNWDLVGNNTPIFFLRDPILFPSFIHTQKRNPATHLKDADMFWDFISLRPETTHQV 180 YTEEGNWDLVGNNTPIFF+RDPILFPSFIH+QKR P++HLKDA+M WDF SLRPE+ H Sbjct: 62 YTEEGNWDLVGNNTPIFFIRDPILFPSFIHSQKRLPSSHLKDANMVWDFFSLRPESLHMQ 121 Query: 181 SFLFSDRGIPDGYRHLNGYGSHTFENVNAQGVVSYVKYHFKTDQGIRNLPVDVADKLAGT 360 ++LFSDRGIPDGYR +NGYGS+TF NVN +G ++YVKYHFKTDQGIRN+ VD A LAG Sbjct: 122 TWLFSDRGIPDGYRFMNGYGSNTFANVNVEGEMTYVKYHFKTDQGIRNMSVDEAASLAGA 181 Query: 361 NPDYAIQDLYEAIARKEYPTWTLYIQVMTQAQAEQHLAQGFNPFDVTKVWSHKTYPLKEV 540 +PDYA +DLYEAI E+P+WTLYIQ MT QA++H F FDVTKVW H +PLKEV Sbjct: 182 DPDYANRDLYEAIEGGEFPSWTLYIQTMTPEQAKKH---KFIAFDVTKVWPHGEFPLKEV 238 Query: 541 GKLVLNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKMLQGRLFSYSDTHRHRLGPNYQQI 720 G+LVLN+NP NYF+++EQLAF+P+H VPGI PSPDKMLQGRLFSY DT RHRLG NYQQI Sbjct: 239 GRLVLNKNPRNYFAEIEQLAFAPSHMVPGIAPSPDKMLQGRLFSYPDTLRHRLGKNYQQI 298 Query: 721 PVNQPVQSQPKNYQRDGFMTVNGNQGGAPNYFPNSFNGPDYLAHVPDPAKQVSQTVIPSL 900 PVN+P+ ++P+ YQRDG +VNGN G AP YFPNS GP + + + +V+ Sbjct: 299 PVNRPL-NEPQTYQRDGQFSVNGNMGDAPMYFPNSMGGPQEVEALRYNKYEGEHSVVDKY 357 Query: 901 SSKDENNFTQAGQILPNVLTGE 966 SS ++N +Q VL E Sbjct: 358 SSAYDDNLSQVQVFYRKVLDDE 379 >46973 Length = 4455 Score = 32.0 bits (71), Expect = 0.36 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Frame = +1 Query: 349 LAGTNPD---YAIQDLYEAIARKEYPTWTLYIQVMTQAQAEQHLAQGFNPFDVTKVWSHK 519 L NPD Y +DL + + WT I+ + Q H A+G P + K W H+ Sbjct: 99 LPPVNPDKFNYKDKDLVQQL-ESTVIHWTRQIKEVINNQDNAHDAEGAGPLEEIKFWEHR 157 Query: 520 TYPLKEV 540 T L + Sbjct: 158 TEDLSGI 164 >75959 Length = 1658 Score = 30.8 bits (68), Expect = 0.80 Identities = 26/90 (28%), Positives = 33/90 (36%) Frame = +1 Query: 529 LKEVGKLVLNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKMLQGRLFSYSDTHRHRLGPN 708 LK K P +D LA S A QPSP + RL + DTH R Sbjct: 953 LKPQSKWAPCSQPQTRNADAPVLASSLA-----TQPSPPLVFLRRLLKFLDTHTERTELE 1007 Query: 709 YQQIPVNQPVQSQPKNYQRDGFMTVNGNQG 798 + P ++ S + G T G QG Sbjct: 1008 LLRFPTSEATSSLSDKRKFVGIGTSGGGQG 1037 >84802 Length = 974 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 481 FNPFDVTKVWSHKTYPLKEVGKLV---LNRNPANYFSDVEQLAFSPAHFVPGIQPSPDKM 651 F + VT SHK YPL E+ L+ ++ +P + D+E +P + G +P+P+++ Sbjct: 206 FGGYTVTS--SHKDYPLVEMTPLIAPGVDASPLMTWGDIEG---TPT--ILGSRPTPERI 258 Query: 652 LQGRLFSYSDTHR 690 + F D R Sbjct: 259 MNTPSFELRDKSR 271 >73577 Length = 951 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Frame = +1 Query: 709 YQQIPVNQPVQSQPKNYQRDGFM-TVNGNQGGAPNYFPNSFNGPDYLAHVPDPAKQVSQT 885 YQQ P Q QP YQ+ G+ G G P + + D + P P+ Sbjct: 113 YQQYPPPPQDQYQPPQYQQQGYADDSRGGYNGNPPPVADRYQPMDNFQNQPPPSAYQQYQ 172 Query: 886 VIP 894 +P Sbjct: 173 QLP 175 >73687 Length = 500 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = +3 Query: 576 LQRRGAIGVLPCALCSWHPTFA*QDASRPSLLLLGHASPPSRPELPTDPSESTSAEPTQE 755 L R A+ L L ++ A DASR + HAS P +P+ P+ T+ E Sbjct: 63 LSRDEALQALQPHLNEFNAQLAALDASRQPIEAFAHASLPDVLMIPSSPNGDTTVAFNPE 122 Query: 756 LST 764 L + Sbjct: 123 LKS 125 >84204 Length = 534 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -2 Query: 189 EERHLMRGFRTERDEVPEHVGILQVRRGVALLRVNEAREENGVSEEE 49 ++ L FR E D P G++++ A+LR+ A +E +EE Sbjct: 103 DDERLTTFFREELDSFP---GVVEIEEDAAVLRLTGAIQEEAEEQEE 146 Database: /home/amadoui/banque/phyto_ramorum Posted date: Mar 30, 2007 3:39 PM Number of letters in database: 7,352,630 Number of sequences in database: 16,066 Lambda K H 0.318 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,751,995 Number of Sequences: 16066 Number of extensions: 311888 Number of successful extensions: 1084 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1077 length of database: 7,352,630 effective HSP length: 96 effective length of database: 5,810,294 effective search space used: 1342177914 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)