BLASTX 2.2.9 [May-01-2004]
BLASTX 2.2.9 [May-01-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Contig2455 NX0AMYA23YA08CM1.SCF NX0AMYA26YE07CM1.SCF
NX0AMYA26YB12CM1.SCF
         (933 letters)

Database: /home/amadoui/banque/arabette 
           25,820 sequences; 10,745,422 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11630.1 | Symbol: None | 2-cys peroxiredoxin, chloroplast (B...   194   7e-50
AT1G48130.1 | Symbol: None | peroxiredoxin (PER1) / rehydrin, pu...    81   9e-16
AT3G26060.1 | Symbol: None | peroxiredoxin Q, putative, similar ...    65   6e-11
AT1G65970.1 | Symbol: None | peroxiredoxin type 2, putative, str...    34   0.094
AT1G65980.1 | Symbol: None | peroxiredoxin type 2, putative, str...    34   0.094
AT1G65980.2 | Symbol: None | similar to peroxiredoxin type 2, pu...    34   0.094
AT1G60740.1 | Symbol: None | peroxiredoxin type 2, putative, str...    34   0.12 
AT3G08950.1 | Symbol: None | electron transport SCO1/SenC family...    32   0.46 
AT3G50020.1 | Symbol: None | serine protease inhibitor, potato i...    30   1.4  
AT4G28660.1 | Symbol: None | photosystem II reaction centre W (P...    28   5.1  
AT3G52100.1 | Symbol: None | PHD finger family protein, contains...    28   5.1  
AT1G12120.1 | Symbol: None | expressed protein, contains Pfam do...    28   8.8  

>AT3G11630.1 | Symbol: None | 2-cys peroxiredoxin, chloroplast
           (BAS1), identical to SP:Q96291 2-cys peroxiredoxin BAS1,
           chloroplast precursor {Arabidopsis thaliana}; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family |
           chr3:3672126-3674081 FORWARD | Aliases: T19F11.3,
           F24K9.28, F24K9_28
          Length = 266

 Score =  194 bits (492), Expect = 7e-50
 Identities = 93/192 (48%), Positives = 132/192 (68%), Gaps = 2/192 (1%)
 Frame = +2

Query: 284 IGKPAPAFTAPAVVRGDIDEISLHDYLGK-YVVLFFYPKDFTYVCPTEIIAFNDRAKEFE 460
           +G  AP F A AV   +  ++ L DY+GK YV+LFFYP DFT+VCPTEI AF+DR  EFE
Sbjct: 75  VGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFE 134

Query: 461 ALDTQLICASTDTPEVHLAWTRTPRNVGGLGKMKIPMVADVTKVISAKYGCLGESNGFPY 640
            L+T+++  S D+   HLAW +T R  GGLG +  P+++DVTK IS  +G L    G   
Sbjct: 135 KLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIAL 194

Query: 641 RGLYVIDREGILQSYTINNNPVGRSVDEALRLVKAFQFYEEH-GEVCPANWQPGDATIVD 817
           RGL++ID+EG++Q  TINN  +GRSVDE +R ++A Q+ +E+  EVCPA W+PG+ ++  
Sbjct: 195 RGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKSMKP 254

Query: 818 NPVESQKYFKNV 853
           +P  S++YF  +
Sbjct: 255 DPKLSKEYFSAI 266


>AT1G48130.1 | Symbol: None | peroxiredoxin (PER1) / rehydrin,
           putative, identical to peroxiredoxin (Rehydrin homolog)
           (Arabidopsis thaliana) SWISS-PROT:O04005; contains Pfam
           profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
           and thiol-specific antioxidant) family |
           chr1:17784171-17785396 FORWARD | Aliases: F21D18.15,
           F21D18_15
          Length = 216

 Score = 80.9 bits (198), Expect = 9e-16
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
 Frame = +2

Query: 338 DEISLHDYLGK-YVVLFFYPKDFTYVCPTEIIAFNDRAKEFEALDTQLICASTDTPEVHL 514
           D+  LHDY    + VLF +P DFT VC TE+ A    A EF+    +L+  S D  + H 
Sbjct: 20  DKFKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHK 79

Query: 515 AWTRTPRNVGGLGKMKIPMVADVTKVISAKYGCLGESNGFPYRGLYVIDREGILQSYTIN 694
            W +         K+  P++AD  K I  +   +      P R L+++  +  ++   + 
Sbjct: 80  DWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRALHIVGPDSKIKLSFLY 139

Query: 695 NNPVGRSVDEALRLVKAFQFYEEHGE--VCPANWQPGDATIVDNPVESQKYFKNV 853
            +  GR++DE LR + +     +H      P NW+P D  +V +P  S +  K +
Sbjct: 140 PSTTGRNMDEVLRALDSLLMASKHNNKIATPVNWKP-DQPVVISPAVSDEEAKKM 193


>AT3G26060.1 | Symbol: None | peroxiredoxin Q, putative, similar to
           peroxiredoxin Q (Sedum lineare) GI:6899842; contains
           Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
           reductase and thiol-specific antioxidant) family |
           chr3:9526013-9527611 FORWARD | Aliases: MPE11.21
          Length = 216

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
 Frame = +2

Query: 287 GKPAPAFTAPAVVRGDIDEISLHDYLGKYVVLFFYPKDFTYVCPTEIIAFNDRAKEFEAL 466
           G+ AP FT   +   +   +SL  Y GK VVL+FYP D T  C  +  AF D  ++F+  
Sbjct: 72  GQAAPDFT---LKDQNGKPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKA 128

Query: 467 DTQLICASTDTPEVHLAWTRTPRNVGGLGKMKIP--MVADVTKVISAKYGCLGESNG-FP 637
             ++I  S D    H A+           K K+P  +++D    +   +G  G+  G  P
Sbjct: 129 GAEVIGISGDDSASHKAFA---------SKYKLPYTLLSDEGNKVRKDWGVPGDLFGALP 179

Query: 638 YRGLYVIDREGILQSYTINNNPVGRSVDEALRLVKA 745
            R  YV+D+ G++Q    N     + +DE L+ +KA
Sbjct: 180 GRQTYVLDKNGVVQLIYNNQFQPEKHIDETLKFLKA 215


>AT1G65970.1 | Symbol: None | peroxiredoxin type 2, putative, strong
           similarity to type 2 peroxiredoxin (Brassica rapa subsp.
           pekinensis) GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family |
           chr1:24560479-24561952 REVERSE | Aliases: F12P19.13,
           F12P19_13
          Length = 162

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +2

Query: 335 IDEISLHDYL-GKYVVLFFYPKDFTYVCP-TEIIAFNDRAKEFEALDT-QLICASTDTPE 505
           +  +S+H    GK V+LF  P  FT  C  + +  F  +A+E ++    ++IC S + P 
Sbjct: 24  LQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPF 83

Query: 506 VHLAWTRT-PRN 538
           V  AW +T P N
Sbjct: 84  VMKAWGKTYPEN 95


>AT1G65980.1 | Symbol: None | peroxiredoxin type 2, putative, strong
           similarity to type 2 peroxiredoxin (Brassica rapa subsp.
           pekinensis) GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family |
           chr1:24562969-24564599 REVERSE | Aliases: F12P19.14,
           F12P19_14
          Length = 162

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 365 GKYVVLFFYPKDFTYVCPTEII-AFNDRAKEFEALDT-QLICASTDTPEVHLAWTRT-PR 535
           GK V+LF  P  FT  C  + +  F ++A+E ++    ++IC S + P V  AW +T P 
Sbjct: 35  GKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPE 94

Query: 536 N 538
           N
Sbjct: 95  N 95


>AT1G65980.2 | Symbol: None | similar to peroxiredoxin type 2,
           putative [Arabidopsis thaliana] (TAIR:At1g65970.1);
           similar to thioredoxin peroxidase 1 [Lycopersicon
           esculentum] (GB:AAP34571.1); similar to
           thioredoxin-dependent peroxidase [Plantago major]
           (GB:CAH58634.1); contains InterPro domain Alkyl
           hydroperoxide reductase/ Thiol specific antioxidant/ Mal
           allergen (InterPro:IPR000866) | chr1:24562969-24564599
           REVERSE | Aliases: None
          Length = 121

 Score = 34.3 bits (77), Expect = 0.094
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +2

Query: 365 GKYVVLFFYPKDFTYVCPTEII-AFNDRAKEFEALDT-QLICASTDTPEVHLAWTRT-PR 535
           GK V+LF  P  FT  C  + +  F ++A+E ++    ++IC S + P V  AW +T P 
Sbjct: 35  GKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPE 94

Query: 536 N 538
           N
Sbjct: 95  N 95


>AT1G60740.1 | Symbol: None | peroxiredoxin type 2, putative, strong
           similarity to type 2 peroxiredoxin (Brassica rapa subsp.
           pekinensis) GI:4928472; contains Pfam profile: PF00578
           AhpC/TSA (alkyl hydroperoxide reductase and
           thiol-specific antioxidant) family |
           chr1:22364739-22365617 FORWARD | Aliases: F8A5.25,
           F8A5_25
          Length = 162

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 335 IDEISLHDYL-GKYVVLFFYPKDFTYVCP-TEIIAFNDRAKEFEALDT-QLICASTDTPE 505
           +  +S+H    GK V+LF  P  FT  C  + +  F  +A+E ++    ++IC S + P 
Sbjct: 24  LQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPF 83

Query: 506 VHLAWTRT 529
           V  AW +T
Sbjct: 84  VMKAWGKT 91


>AT3G08950.1 | Symbol: None | electron transport SCO1/SenC family
           protein, similar to SP:P23833 SCO1 protein,
           mitochondrial precursor {Saccharomyces cerevisiae};
           contains Pfam profile PF02630: SCO1/SenC |
           chr3:2727220-2729606 FORWARD | Aliases: T16O11.9
          Length = 334

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 269 APKAFIGKPAPAFTAPAVVRGDIDEISLHDYLGKYVVLFFYPKDFTYVCPTEII---AFN 439
           A KA IG P       +++R D   ++  + +GK+ +L+F       +CP E+I   A  
Sbjct: 168 AGKAAIGGPF------SLIRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAI 221

Query: 440 DRAKEFEALDTQLICASTD 496
           D+ KE   +D   +  S D
Sbjct: 222 DKIKENSGVDVVPVFISVD 240


>AT3G50020.1 | Symbol: None | serine protease inhibitor, potato
           inhibitor I-type family protein, contains Pfam profile
           PF00280: Potato inhibitor I family |
           chr3:18553148-18553670 REVERSE | Aliases: F3A4.100
          Length = 96

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 64  SSPCRRCGCARVSSKPIFDSTK 129
           S PC+RC CA ++ +P+F   K
Sbjct: 9   SPPCQRCSCAGITCQPLFPGIK 30


>AT4G28660.1 | Symbol: None | photosystem II reaction centre W
           (PsbW) family protein, contains Pfam profile: PF03912
           photosystem II reaction centre W protein, PsbW |
           chr4:14149922-14151103 FORWARD | Aliases: T5F17.110,
           T5F17_110
          Length = 183

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 500 PEVHLAWTRTPRNVGGLGKMKIPMVADVTKVISAKYGCLGESNGFPYRGLYVIDREGILQ 679
           P+V L  +R   N   L     P V D +       G +GE  G     LY+ID EG++Q
Sbjct: 86  PDVKLTRSRDGSNGMALFSFDQPSVFDSS-------GEVGEITG-----LYMIDEEGVIQ 133

Query: 680 SYTIN 694
           S  +N
Sbjct: 134 STDVN 138


>AT3G52100.1 | Symbol: None | PHD finger family protein, contains
           Pfam profile PF00628: PHD-finger |
           chr3:19330321-19333751 FORWARD | Aliases: F4F15.210
          Length = 696

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 569 WGSSSCPNHRRCVGCGS--RPNALLACRSMRKSIAC 468
           W S +CP+ R C GCG+   P   + C+    +  C
Sbjct: 205 WSSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHC 240


>AT1G12120.1 | Symbol: None | expressed protein, contains Pfam
           domain PF05904: Plant protein of unknown function
           (DUF863) | chr1:4114769-4117592 REVERSE | Aliases:
           T28K15.14, T28K15_14
          Length = 483

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 25  SPLCRLARRAHSTSSPCRRCGCARVSSKPIFDSTKDASSPLCFAPSC 165
           SP C+       T+SP     C    +    +S + +SSP    PSC
Sbjct: 237 SPQCQNVHEKDGTASPASDTSCCTTENNSRIESRR-SSSPRALQPSC 282


  Database: /home/amadoui/banque/arabette
    Posted date:  Mar 30, 2007  3:37 PM
  Number of letters in database: 10,745,422
  Number of sequences in database:  25,820
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,999,770
Number of Sequences: 25820
Number of extensions: 378023
Number of successful extensions: 1163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 10,745,422
effective HSP length: 98
effective length of database: 8,215,062
effective search space used: 1741593144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)