Proteomic studies on Arabidopsis thaliana
Proteomic studies on monocot plants
Proteomic studies on other plants
Xylem sap proteomes
Reviews on plant cell wall proteomics
Databases and Bioinformatics

Proteomic studies on Arabidopsis thaliana

Differential extraction and protein sequencing reveals major differences in patterns of primary cell wall proteins from plants.
D Robertson, GP Mitchell, JS Gilroy, C Gerrish, GP Bolwell and AR Slabas
J. Biol. Chem., 272: 15841-15848, 1997. Full text

Proteomic analysis of the Arabidopsis thaliana cell wall.
S Chivasa, BK Ndimba, WJ Simon, D Robertson, X-L Yu, JP Knox, P Bolwell and AR Slabas
Electrophoresis, 23: 1754-1765, 2002. Abstract

Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: A critical analysis.
G Borderies, E Jamet, C Lafitte, M Rossignol, A Jauneau, G Boudart, B Monsarrat, M-T Esquerré-Tugayé, A Boudet and R Pont-Lezica
Electrophoresis, 24:3421-3432, 2003. Full text

Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.
GH Borner, KS Lilley, TJ Stevens and P Dupree
Plant Physiol., 132: 568-577, 2003. Full text

The assessment of enriched apoplastic extracts using proteomic approaches.
RP Haslam, AL Downie, M Raventon, K Gallardo, D Job, KE Pallett, P John, MAJ Parry and JOD Coleman
Ann. Appl. Biol., 143: 81-91, 2003. Full text

Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins.
F Elortza F, TS Nühse, LJ Foster, A Stensballe, SC Peck and ON Jensen
Mol. Cell. Proteomics, 2: 1261-1270, 2003. Full text

Post-translational modifications of arabinogalactan-peptides of Arabidopsis thaliana. Endoplasmic reticulum and glycosylphosphatidylinositol-anchor signal cleavage sites and hydroxylation of proline.
CJ Schultz, KL Ferguson, J Lahnstein and A Bacic
J. Biol. Chem., 279: 45503-45511, 2004. Full text

Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: Identification by mass spectrometry and bioinformatics.
G Boudart, E Jamet, M Rossignol, C Lafitte, G Borderies, A Jauneau, M-T Esquerré-Tugayé and R Pont-Lezica
Proteomics, 5: 212-221, 2005. Full text

Proteomic analysis of secreted proteins from Arabidopsis thaliana seedlings: improved recovery following removal of phenolic compounds.
S Charmont, E Jamet, R Pont-Lezica and H Canut
Phytochemistry, 66: 453-461, 2005. Full text

A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells.
H-K Kwon, R Yokoyama and K Nishitani
Plant Cell Physiol., 46: 843-857, 2005. Full text

Secretome analysis reveals an Arabidopsis lipase involved in defense against Alternaria brassicicola.
IS Oh, AR Park, MS Bae, SJ Kwon, YS Kim, JE Lee, NY Kang, S Lee, H Cheong and OK Park
Plant Cell, 17: 2832-2847, 2005. Full text

Extracellular proteomes of Arabidopsis thaliana and Brassica napus roots: analysis and comparison by MUdPIT and LC-MS/MS.
U Basu, JL Francis, RW Whittal, JL Stephens, Y Wang, OR Zaiane, R Goebel, DG Muench, AG Good and GJ Taylor
Plant Soil, 286: 357-376, 2006. Full text

Arabidopsis cell wall proteome defined using multidimensional protein identification technology.
EM Bayer, AR Bottrill, J Walshaw, M Vigouroux, MJ Naldrrett, CL Thomas and AJ Maule
Proteomics, 6: 301-311, 2006. Full text

Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls.
L Feiz, M Irshad, RF Pont-Lezica, H Canut and E Jamet
Plant Methods, 2: 10, 2006. Full text

Modification-specific proteomics of plasma membrane proteins: Identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.
F Elortza, S Mohammad, J Bunkenborg, L Foster, TS Nühse, U Brodbeck, SC Peck and ON Jensen
J. Proteome Res., 5: 935-943, 2006. Full text

A sub-proteome of Arabidopsis thaliana trapped on Concanavalin A is enriched in cell wall glycoside hydrolases.
Z Minic, E Jamet, L Negroni, PA der Garabedian, M Zivy and L Jouanin
J. Exp. Bot., 58: 2503-2512, 2007. Full text

Proteomic analysis of alterations in the secretome of Arabidopsis thaliana suspension cells subjected to nutritional phosphate deficiency.
HT Tran and WC Plaxton
Proteomics, 8: 4317-4326, 2008. Full text

A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana : confirmed actors and newcomers.
M Irshad, H Canut, G Borderies, R Pont-Lezica and E Jamet
BMC Plant Biol., 8: 94, 2008. Full text

Absolute protein quantification by LC/MS for global analysis of salicylic acid-induced plant protein secretion responses.
F-Y Cheng, K Blackburn, Y-M Lin, MB Goshe and JD Wiliamson
J. Proteome Res., 8: 82-93, 2009. Full text

Plant cell wall proteomics: mass spectrometry data, a trove for research on protein structure/function relationships.
C Albenne, H Canut, G Boudart, Y Zhang, H San Clemente, R Pont-Lezica and E Jamet
Mol. Plant, 2: 977-989, 2009. Full text

Identification by 2-D DIGE of apoplastic proteins regulated by oligogalacturonides in Arabidopsis thaliana.
M Casasoli, S Spadoni, KS Lilley, F Cervone, G De Lorenzo and B Mattei
Proteomics, 8: 1042-1054, 2008. Full text

Combining various strategies to increase the coverage of the plant cell wall glycoproteome.
Y Zhang, A Giboulot, M Zivy, B Valot, E Jamet and C Albenne
Phytochemistry, 72: 1109-1123, 2011. Full text

N-glycan occupancy of Arabidopsis N-glycoproteins.
W Song, RA Mentink, MGL Henquet, JHG Cordewener, ADJ van Dijk, D Bosch, AHP America, AR van der Krol
J. Proteomics, 93: 343-355, 2013. Full text

Identification of the abundant hydroxyproline-rich glycoproteins in the root walls of wild-type Arabidopsis, an ext3 mutant line, and its phenotypic revertant
Y Chen, D Ye, MA, Held, MC Cannon, T Ray, P Saha, AN Frye, AJ Mort and MJ Kieliszewski
Plants, 4: 85-111, 2015. Full text

Proteome readjustments in the apoplastic space of Arabidopsis thaliana ggt1 mutant leaves exposed to UV-B radiation
AR Trentin, M Pivato, SMM Mehdi, LE Barnabas, S Giaretta, M Fabrega-Prats, D Prasad, G Arrigoni and A Masi
Front. Plant Sci, 6: 128, 2015. Full text

Ascorbate deficiency influences the leaf cell wall glycoproteome in Arabidopsis thaliana
N Sultana, HV Florance, A Johns and N Smirnoff
Plant Cell Environ., 38: 375-384, 2015. Full text

Arabidopsis thaliana root cell wall proteomics: increasing the proteome coverage using a combinatorial peptide ligand library and description of unexpected Hyp in peroxidase amino acid sequences.
H Nguyen-Kim, H San Clemente, T Balliau, M Zivy, C Dunand, C Albenne and E Jamet
Proteomics, 16: 491-503, 2016. Full text

An enlarged cell wall proteome of Arabidopsis thaliana rosettes
V Hervé, H Duruflé, H San Clemente, C Albenne, T Balliau, M Zivy, C Dunand and E Jamet
Proteomics, 16: 3183-3187, 2016. Full text

N-Glycopeptide profiling in Arabidopsis inflorescence
S-L Xu, KM Medzihradszky, Z-Y Wang, AL Burlingame and RJ Chalkley
Mol Cell Proteomics, 15: 2048-2054, 2016. Full text

Cell wall proteome analysis of Arabidopsis thaliana mature stems
H Duruflé, H San Clemente, T Balliau, M Zivy, C Dunand and E Jamet
Proteomics, DOI: 10.1002/pmic.201600449, 2017. Full text

Cell wall adaptation of two contrasted ecotypes of Arabidopsis thaliana, Col and Sha, to sub-optimal growth conditions: an integrative study
H Duruflé, V Hervé, P Ranocha, T Balliau, M Zivy, J Chourré, H San Clemente, V Burlat, C Albenne, S Déjean, E Jamet and C Dunand
Plant Sci., 263: 183-193, 2017. Full text

Identification and characterization of Arabidopsis seed coat mucilage proteins
AYL Tsai, T Kunieda, J Rogalski, LJ Foster, BE Ellis and GH Haughn
Plant Physiol., 173: 1059-1074, 2017. Full text

Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at sub-optimal temperature.
Duruflé H, Ranocha P, Balliau T, Zivy M, Dunand C, and E Jamet
Data Brief, 27, 104581, 2019. Full text

Pollen coat proteomes of Arabidopsis thaliana, Arabidopsis lyrata, and Brassica oleracea reveal remarkable diversity of small cysteine-rich proteins at the pollen-stigma interface.
L Wang, Y-L Lau, L Fan, M Bosch and J Doughty
Biomolecules, 13, 157, 2023. Full text

Proteomic studies on monocot plants

Systematic secretome analyses of rice leaf and seed callus suspension-cultured cells: Workflow development and establishment of high-density two-dimensional gel reference maps.
Y-H Jung, S-H Jeong, SH Kim, R Singh, J-E Lee, Y-S Cho, GK Agrawal, R Rakwal and N-S Jwa
J. Proteome Res., 7: 5187-5210, 2008. Full text

Proteomics of weakly bound cell wall proteins in rice calli.
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park and JY Kim
J. Plant Physiol., 166: 675-685, 2009. Full text

The proteomic analysis of the secretome of rice calli.
WK Cho, XY Chen, H Chu, Y Rim, S Kim, ST Kim, S-W Kim, Z-Y Park and J-Y Kim
Physiol. Plant., 135: 331-341, 2009. Full text

Comparative proteomics analysis of the root apoplasts of rice seedlings in response to hydrogen peroxide.
L Zhou, SA Bokhari, CJ Dong and JY Liu
PLoS ONE, 6: e16723, 2011. Full text

Brachypodium distachyon as a model plant towards improved biofuel crops:
Search for secreted proteins involved in biogenesis and disassembly of cell wall polymers.

T Douché, H San Clemente,V Burlat, D Roujol, M Zivy, B Valot, R Pont-Lezica and E Jamet
Proteomics, 13: 2438-2454, 2013. Full text

Cell wall proteomics of sugarcane cell suspension cultures
MJ Calderan-Rodrigues, E Jamet, MB Calderan Rodrigues Bonassi, S Guidetti-Gonzalez, A Carmanhanis Begossi, L Vaz Setem, LM Franceschini, J Guimaraes Fonseca and CA Labate
Proteomics, 14: 738-749, 2014. Full text

Cell wall proteomic of Brachypodium distachyon grains: A focus on cell wall remodeling proteins
M Francin-Allami, K Merah, C Albenne, H Rogniaux,M Pavlovic, V Lollier, R Sibout, F Guillon, E Jamet and C Larré
Proteomics, 15: 2296-2306, 2015. Full text

N-linked glycoproteome profiling of seedling leaf in Brachypodium distachyon L.
M Zhang, G Chen, D Lv, X Li and Y Yan
J Proteome Res, 14: 1727-1738, 2015. Full text

Cell wall proteome of sugarcane stems: comparison of a destructive and a non-destructive extraction method showed differences in glycoside hydrolases and peroxidases
MJ Calderan-Rodrigues, E Jamet, T Douche, MB Rodrigues-Bonassi, T Regiani Cataldi, J Fonseca Guimarães, H San Clemente, R Pont-Lezica and CA Labate
BMC Plant Biol., 16: 14, 2016. Full text

Understanding the remodelling of cell walls during Brachypodium distachyon grain development through a sub-cellular quantitative proteomic approach
M Francin-Allami, V Lollier, M Pavlovic, H San Clemente, H Rogniaux, E Jamet, F Guillon and C Larré
Proteomes, 4: 21, 2016. Full text

Cell wall proteome of sugarcane young and mature leaves and stems
JG Fonseca, MJ Calderan-Rodrigues, FE de Moraes, TR Cataldi, E Jamet and CA Labate
Proteomics, 18: 1700129, 2018. Full text

Cell wall proteome investigation of bread wheat (Triticum aestivum) developing grain in endosperm and outer layers.
M Cherkaoui, A Geairon, V Lollier, H San Clemente, C Larré, H Rogniaux, E Jamet, F Guillon and M Francin-Allami M
Proteomics, 18: 180086, 2018. Abstract

Cell wall proteome of wheat grain endosperm and outer layers at two key stages of early development.
Cherkaoui M, Lollier V, Geairon A, Bouder A, Larré C, Rogniaux H, E Jamet, F Guillon and M Francin-Allami
Int J Mol Sci, 21,239, 2020. Full text

Cell wall proteomic datasets of stems and leaves of Brachypodium distachyon.
T Douché, B Valot, T Balliau, M Zivy, H San Clemente and E Jamet
Data Brief, 35: 106818, 2021. Full text

Changes in the cell wall proteome of leaves in response to high temperature stress in Brachypodium distachyon
A Pinski, A Betekhtin, B Skupien-Rabian, U Jankowska, E Jamet and R Hasterok
Int J Mol Sci 22: 6750,2021 Full text

Proteomic studies on other plants

Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar.
O Pechanova, C-Y Hsu, JP Adams, T Pechan, L Vandervelde, J Drnevich, S Jawdy, A adeli, JC Suttle, AM Lawrence TJ Tschaplinski, A Seguin and C Yuceer
BMC Genomics, 11: 674, 2010. Full text

Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis.
TH Yeats, KJ Howe, AJ Matas, GJ Buda, TW Thannhauser and JKC Rose
J Exp Bot, 61: 3759-3771, 2010. Full text

Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis.
C Catala, KJ Howe, S Hicko, JKC Rose and TW Thannhauser
Proteomics, 11: 1530-1544, 2011. Full text

Protein profiling in potato (Solanum tuberosum L.) leaf tissues by differential centrifugation.
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski and DM Pinto
J Proteome Res, 11: 2594-2601, 2012. Full text

Proteomic analysis of cell walls of two developmental stages of alfalfa stems
JC Verdonk, RD Hatfield and ML Sullivan
Front Plant Sci, 3 : 279, 2012. Full text

Identification of cell wall proteins in the flax (Linum usitatissimum) stem.
A Day, S FĂ©nart, G Neutelings, S Hawkins, C Rolando and C Tokarski
Proteomics, 13: 812-825, 2013. Full text

Glycoproteome of elongating cotton fiber cells.
S Kumar, K Kumar, P Pandey, V Rajamani, KV Padmalatha, G Dhandapani, M Kanakachari, S Leelavathi, PA Kumar and VS Reddy
Mol Cell Proteomics, 12: 3677-3689, 2013. Full text

A proteomic approach to Physcomitrella patens rhizoid exudates
T Martinez-Cortés, F Pomar, F Merino and E Novo-Uzal
J Plant Physiol, 171: 1671-1678, 2014. Full text

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach
T Bengtsson, D Weighill, F Levander, S Resjö, DDBurra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson and E Alexandersson
BMC Genomics, 15: 315, 2014. Full text

An improved protocol to study the plant cell wall proteome
B Printz, R Dos Santos Morais, S Wienkoop, K Sergeant, S Lutts, JF Hausman and J Renaut
Front Plant Sci, 6 : 237, 2015. Full text

Comparative N-glycoproteome analysis provides novel inside into the regulation mechanism in tomato (Solanum lycopersicum L.) during fruit ripening process.
X Zhang, H Tang, H Du, Z Liu, Z Bao and Q Shi
Plant Sci., 293: 110413, 2020. Full text

Investigation of cell wall proteins of C. sinensis leaves by combining cell wall proteomics and N-glycoproteomics
Y Liu, L Ma, D Cao, Z Gong, J Fan, H Hu and X Jin
BMC Plant Biol, 21: 384, 2021. Full text

The cell wall proteome of Marchantia polymorpha reveals specificities compared to those of flowering plants
H Kolkas, T Balliau, J Chourré, M Zivy, H Canut and E Jamet
Front Plant Sci , 12: 765846, 2022. Full text

Xylem sap proteomes

Analysis of xylem sap proteins from Brassica napus.
J Kehr, A Buhtz and P Giavalisco
BMC Plant Biol., 5, 11, 2005. Full text

Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporum growth but not disease symptoms.
S Floerl, C Druebert, A Majcherczyk, P Karlovsky, U Kües and A Polle
BMC Plant Biol., 8, 129, 2008. Full text

Proteomic analysis of hybrid poplar xylem sap.
NJ Dafoe and P Constabel
Phytochemistry, 70: 856-863, 2009. Full text

Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins.
L Ligat, E Lauber, C Albenne, H San Clemente, B Valot, M Zivy, R Pont-Lezica, M Arlat and E Jamet
Proteomics, 11: 1798-1813, 2011. Full text

Xylem sap proteomics.
T Dugé de Bernonville, C Albenne, M Arlat, L Hoffmann, E Lauber and E Jamet
Methods Mol Biol, 1072: 391-405, 2014. Abstract

Xylem sap in cotton contains proteins that contribute to environmental stress responsae and cell wall development.
Z Zhang, W Xin, S Wang, X Zhang, H dai, R Sun, T Frazier, B Zhang and Q Wang
Funct Integr Genomics, 15: 17-26, 2015. Abstract

Reviews on plant cell wall proteomics

Digging deeper into the plant cell wall proteome.
SJ Lee, RS Saravanan, CM Damasceno, H Yamane, BD Kim and JK Rose
Plant Physiol. Biochem., 42: 979-988, 2004. Full text

Tackling the plant proteome: practical approaches, hurdles, and experimental tools.
JKC Rose, S Bashir, JJ Giovannoni, MM Jahn and RS Saravanan
Plant J., 39: 715-733, 2004. Full text

The plot thickens: New perspectives of primary cell wall modification.
JK Rose, M Saladié and C Catalá
Curr. Opin. Plant Biol., 7: 296-301, 2004. Full text

Proteomic analysis of the Arabidopsis cell wall reveals unexpected proteins with new cellular locations.
AR Slabas, B Ndimba, WJ Simon and S Chivasa
Biochem. Soc. Trans., 32: 524-528, 2004. Full text

Cell wall proteins: a new insight through proteomics.
E Jamet, H Canut, G Boudart and RF Pont-Lezica
Trends Plant Sci., 11: 33-39, 2006. Full text

Cell wall proteome.
G Boudart, Z Minic, C Albenne, H Canut, E Jamet and R Pont-Lezica
In: Plant proteomics (eds. S. Samaj, J. Thelen), Springer, Berlin, pp 169-185, 2007. Full text

Cell wall.
E Jamet, H Canut, C Albenne, G Boudart and R Pont-Lezica
In: Plant Proteomics: Technologies, Strategies, and Applications (eds. G.K. Agrawal, R. Rakwal), Wiley, USA, pp-293-307, 2008. Full text

Isolation of plant cell wall proteins.
E Jamet, G Boudart, G Borderies, S Charmont, C Lafitte, M Rossignol, H Canut and R Pont-Lezica
Methods Mol. Biol., 425: 187-201, 2008. Abstract

Recent advances in plant cell wall proteomics.
E Jamet, C Albenne, G Boudart, M Irshad, H Canut and R Pont-Lezica
Proteomics, 8: 893-908, 2008. Full text

The puzzle of protein location in plant proteomics.
E Jamet and R Pont-Lezica
In Proteomics: Methods, Applications and Limitations, G Rancourt ed, Nova Science
Publishers, Inc., Hauppauge, NY, USA, 2010. Full text

Straying off the highway: trafficking of secreted plant proteins and complexity in the plant cell wall proteome.
JKC Rose and S-J Lee
Plant Physiol, 153: 433-436, 2010. Full text

Analytical technologies for identification and characterization of the plant N-glycoproteome.
E Ruiz-May, TW Thannhauser, S Zhang and JKC Rose
Front. Plant Sci. 3: 150,2012 Full text

Plant cell wall proteomics: the leadership of Arabidopsis thaliana.
C Albenne, H Canut and E Jamet
Front Plant Sci 4: 111, 2013. Full text

Plant secretome - From cellular process to biological activity.
C Krause, S Richter, C Knöll and G Jürgens
Biochim. Biophys. Acta., 1834: 2429-2441,2013 Full text

Plant cell wall proteins: a large body of data, but what about runaways?
C Albenne, H Canut, L Hoffmann and E Jamet
Proteomes 2: 224-242, 2014. Full text

Post-translational modifications of plant cell wall proteins and peptides: A survey from a proteomics point of view.
H Canut H, C Albenne C and E Jamet
Biochim. Biophys. Acta., 1864: 983-990,2016 Full text

Plant fluid proteomics: Delving into the xylem sap, phloem sap and apoplastic fluid proteomes.
J Rodríguez-Celma, L Ceballos-Laita, MA Grusak, J Abadí and AF López-Millán
Biochim. Biophys. Acta., 1864: 991-1002,2016 Full text

Unconventional protein secretion in plants: a critical assessment.
DG Robinson, Y Ding and L Jiang
Protoplasma, 253: 31-43,2016 Abstract

Cell wall proteomics as a means to identify target genes to improve second generation biofuel production
MJ Calderan-Rodrigues, JG Fonseca, CA Labate and E Jamet
In Frontiers in Bioenergy and Biofuels (E Jacob-Lopes and L Queiroz Zepka ed), InTech Open access Publisher, Croatia, pp 5-24. Full text

Extraction and characterization of extracellular proteins and their post-translational modifications from Arabidopsis thaliana suspension cell cultures and seedlings: a critical review.
M Ghahremani, A Kyla and W Plaxton
Proteomes, 4:25, 2016 Full text

Protein dynamics in the plant extracellular space.
L Guerra-Guimarães, C Pinheiro, I Chaves, DR Barros and CP Ricardo
Proteomes, 4:22, 2016 Full text

Isolation of the cell wall
H Canut, C Albenne and E Jamet
Methods Mol Biol. 1511: 171-185,2017 Full text

Plant lectins and lectin receptor-like kinases : How do they sense the outside?
K Bellande, JJ Bono, B Savelli, E Jamet and H Canut
Int. J. Mol. Sci. 18: 1164,2017 Full text

Plant cell wall proteomics as a strategy to reveal candidate proteins involved in extracellular lipid metabolism
A Jacq, V Burlat and E Jamet
Curr. Protein Pept. Sci. 19: 190-199,2018 Abstract

Plant cell wall proteomics: A focus on monocot species, Brachypodium distachyon, Saccharum spp and Oryza sativa
MJ Calderan-Rodrigues, JG Fonseca, FE de Moraes, LV Setem, AC Begossi, TR Cataldi and CA Labate
Int J Mol Sci 20: 1975,2019 Full text

Plant cell wall proteomes: the core of conserved protein families and the case of non-canonical proteins
H San Clemente, H Kolkas, H Canut and E Jamet
Int J Mol Sci 23: 4273,2022 Full text

Databases and Bioinformatics

The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism.
T Girke, J Lauricha, H Tran, K Keegstra and N Raikhel
Plant Physiol, 136: 3003-3008, 2004. Full text

PPDB, the Plant Proteomics Database at Cornell.
Q Sun, B Zybailov, W Majeran, G Friso, P Olinares and K van Wijk
Nucleic Acids Res, 37(Database issue): D969-D974, 2008. Full text

Bioinformatics as a tool for assessing the quality of sub-cellular proteomic strategies and inferring functions of proteins: plant cell wall proteomics as a test case.
H San Clemente, R Pont-Lezica and E Jamet
Bioinform. Biol. Insights, 3: 15-28, 2009. Full text

SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis.
S Tanz, I Castelden, C Hooper, M Vacher, I Small and H Millar
Nucleic Acids Res, 41(Database issue): D1185-D1191, 2013. Full text

Subcellular locations of potential cell wall proteins in plants: predictors, databases and cross-referencing
X Wu, Q Zhang, Z Wu, F Tai and W Wang
Brief. Bioinform., 1: 11, 2017 Full text


Plant cell wall functional genomics: Novelties from proteomics.
R Pont-Lezica, Z Minic, H San Clemente, D Roujol and E Jamet
In Advances in Genetics Research, vol 1, M Osborne ed, Nova Science Publishers, Inc,
Hauppauge, NY, USA, vol. 1, pp 265-281, 2010. Full text

Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins.
L Ligat, E Lauber, C Albenne, H San Clemente, B Valot, M Zivy, R Pont-Lezica, M Arlat and E Jamet
Proteomics, 11: 1798-1813, 2011. Full text

WallProtDB, a database resource for plant cell wall proteomics.
H San Clemente and E Jamet
Plant Methods, 11: 2, 2015. Full text

Comparison of mass spectrometry data and bioinformatics predictions to assess the bona fide localization of proteins identified in cell wall proteomics studies
A Pinski, D Roujol, C Pouzet, L Bordes, H San Clemente, L Hoffmann and E Jamet
Plant. Sci., 310: 110979, 2021. Full text