TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves... 301 3e-081
gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (L... 256 3e-067
gb|BG053797.1|BG053797 RHIZ2_9_H06.b1_A003 Rhizome2 (RHIZ2)... 255 4e-067
gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1... 232 5e-060
gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated... 224 9e-058
gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots ... 224 9e-058
gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum m... 205 5e-052
gb|BF705218.1|BF705218 RHIZ2_2_B07.b1_A003 Rhizome2 (RHIZ2)... 203 3e-051
gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation... 92 5e-047
gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sor... 188 7e-047
gb|CW228638.1|CW228638 104_668_11206487_148_37248_086 Sorgh... 131 2e-046
gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1... 184 9e-046
gb|CW381596.1|CW381596 fsbb001f063b09k0 Sorghum methylation... 133 6e-040
gb|CW028177.1|CW028177 104_255_10498940_114_30394 Sorghum m... 92 5e-037
gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorgh... 92 3e-036
gb|CW028178.1|CW028178 104_255_10498940_116_30393 Sorghum m... 92 6e-036
gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/c... 149 5e-035
gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinol... 149 5e-035
gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassino... 142 6e-033
gb|AW565320.1|AW565320 LG1_342_A12.g1_A002 Light Grown 1 (L... 141 1e-032
gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated... 137 1e-031
gb|CW056516.1|CW056516 104_298_10517725_114_30156 Sorghum m... 133 2e-030
gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkal... 133 2e-030
gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassino... 133 2e-030
gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seed... 133 3e-030
gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves... 133 3e-030
gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots S... 133 3e-030
gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkal... 132 5e-030
gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassino... 132 5e-030
gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/c... 131 9e-030
gb|CL192647.1|CL192647 104_415_10940397_114_32258_085 Sorgh... 57 4e-028
gb|CN144477.1|CN144477 WOUND1_22_C10.g1_A002 Wounded leaves... 90 5e-028
gb|BM326163.1|BM326163 PIC1_66_E10.b1_A002 Pathogen-infecte... 91 5e-028
gb|CX609975.1|CX609975 ANR1_15_H05.g1_A002 Anaerobic roots ... 116 3e-025
gb|CD227487.1|CD227487 CCC1_51_F01.g1_A007 Callus culture/c... 115 8e-025
gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots S... 115 8e-025
gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassino... 115 8e-025
gb|CD427874.1|CD427874 ETH1_34_H06.g1_A002 Ethylene-treated... 93 9e-025
gb|CD221601.1|CD221601 CCC1_55_G07.g1_A007 Callus culture/c... 114 1e-024
gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots ... 114 1e-024
gb|CD220370.1|CD220370 CCC1_66_B03.g1_A007 Callus culture/c... 78 2e-024
gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorgh... 113 2e-024
gb|CD423198.1|CD423198 SA1_27_D12.g1_A002 Salicylic acid-tr... 91 2e-024
gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1... 111 1e-023
gb|DN551920.1|DN551920 pSPR-RT-MR-H2_E06_C288 pSPR Sorghum ... 110 2e-023
gb|BE361431.1|BE361431 DG1_72_B08.b1_A002 Dark Grown 1 (DG1... 108 9e-023
gb|CD223023.1|CD223023 CCC1_25_A06.g1_A007 Callus culture/c... 106 3e-022
gb|CD425326.1|CD425326 SA1_11_E05.g1_A002 Salicylic acid-tr... 106 3e-022
gb|CD428066.1|CD428066 ETH1_32_H06.g1_A002 Ethylene-treated... 106 3e-022
gb|CF434025.1|CF434025 NIT1_31_F11.g1_A002 Nitrogen-deficie... 104 2e-021
>gb|CN143494.1|CN143494 WOUND1_16_D04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 5', mRNA sequence
Length = 738
Score = 301 bits (652), Expect(2) = 3e-081
Identities = 135/158 (85%), Positives = 138/158 (87%)
Frame = -3 / -3
Query: 590 PLYRVMTVAPPMLTTVPTTLAXXXXXXXXXXXXXXTAAMTKVIAGTVFCIAEA*VGDR*Y 411
PLYRV+TVAPPMLTTVPTTLA TAAMTKVIAGTVFCIAEA*VGDR*Y
Sbjct: 577 PLYRVITVAPPMLTTVPTTLATPCLLLRSTCSSLRTAAMTKVIAGTVFCIAEA*VGDR*Y 398
Query: 410 RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISLM 231
RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREM FLYTM+TI L
Sbjct: 397 RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMTFLYTMSTILLT 218
Query: 230 PMLSAALETMWNPARRNCRASTPTSSFSFSGAIVAAAA 117
PMLSAALETMWNPARRNCRASTP +SFSFSGAI AA A
Sbjct: 217 PMLSAALETMWNPARRNCRASTPMNSFSFSGAIAAAPA 104
Score = 290 bits (627), Expect = 2e-077
Identities = 125/131 (95%), Positives = 130/131 (99%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
HIVSRAALNMG+S+IV +VYRN+ISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI
Sbjct: 186 HIVSRAALNMGVSKIVLIVYRNVISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 365
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHG+AKVVGTVVSI
Sbjct: 366 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGVAKVVGTVVSI 545
Query: 559 GGATVITLYKG 591
GGATVITLYKG
Sbjct: 546 GGATVITLYKG 578
Score = 193 bits (416), Expect(3) = 6e-063
Identities = 80/107 (74%), Positives = 83/107 (77%)
Frame = +3 / +2
Query: 174 PAVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREERQAATHLLFAGGV 353
PAVP GRVPH LQGGAQHG Q+DR H VQE HLPRLARSVRLLPREERQ THLLFAGGV
Sbjct: 161 PAVPPGRVPHCLQGGAQHGRQQDRAHRVQERHLPRLARSVRLLPREERQTTTHLLFAGGV 340
Query: 354 LPASAVWDNCEXXXXXXXXXXXXTNLRLCDTEHRPRDHLRHGRCPQA 494
ASAVWDN + TNLRLCDTEHRP +HLRHGRCPQA
Sbjct: 341 FSASAVWDNSKPGLLPPGSVSPVTNLRLCDTEHRPCNHLRHGRCPQA 481
Score = 157 bits (337), Expect(2) = 3e-071
Identities = 64/75 (85%), Positives = 66/75 (88%)
Frame = -2 / -2
Query: 594 RALVQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHDEGDRGDGVLYRRGVGW*QV 415
+ALVQGY G P+DAHHRAHHLG PMPPAQVHLL PEDSGHDEGD DGVLYRRGVGW*QV
Sbjct: 581 QALVQGYHGRPTDAHHRAHHLGHPMPPAQVHLLKPEDSGHDEGDCRDGVLYRRGVGW*QV 402
Query: 414 IQAQEVEALVRSYPT 370
IQ QEVEALV YPT
Sbjct: 401 IQTQEVEALVCCYPT 357
Score = 133 bits (284), Expect(2) = 3e-071
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = -2 / -2
Query: 327 WRPVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
W VFLLEEVGERSEQGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 314 WWSVFLLEEVGERSEQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 141
Score = 108 bits (231), Expect(2) = 7e-032
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = +2 / +1
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSRRKTGRH 328
WQGST SPGRRSTWASARSCS CTGTSSPSPCSLRSPTSSRRKT H
Sbjct: 175 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCSLRSPTSSRRKTDHH 315
Score = 77.1 bits (162), Expect(3) = 4e-026
Identities = 37/63 (58%), Positives = 38/63 (60%)
Frame = -1 / -1
Query: 427 LVTGDTGPGGRSPGSQLSHTALAGRTPPAKRR*VAACLXXXXXXXXXXXXXXXXXSCTP* 248
LVTGDT PGGRSPG LSHTALA +TPPAKRR*V CL SCT *
Sbjct: 414 LVTGDTDPGGRSPGLLLSHTALAEKTPPAKRR*VVVCLSSRGSRRTERARRGR*RSCTR* 235
Query: 247 TRS 239
RS
Sbjct: 234 ARS 226
Score = 68.4 bits (143), Expect(3) = 6e-063
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +2 / +1
Query: 506 T*AGGMGWPRWWARW*ASEGPPS*PCTRA 592
T*AGGMGWPRWWARW*AS G P *PCTRA
Sbjct: 493 T*AGGMGWPRWWARW*ASVGRP**PCTRA 579
Score = 49.6 bits (102), Expect(2) = 7e-032
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2 / +1
Query: 365 RCVG*LRTRASTSWACITCHQ 427
RCVG* +TRASTSW CITCHQ
Sbjct: 352 RCVG*QQTRASTSWVCITCHQ 414
Score = 46.0 bits (94), Expect(3) = 4e-026
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 199 GTLPEGTAGPALRRAASASQEPS 131
GTLP GTAGPALR ASASQEPS
Sbjct: 186 GTLPGGTAGPALR*TASASQEPS 118
Score = 33.6 bits (67), Expect(3) = 4e-026
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1 / -1
Query: 523 HASCSGPPALA*GQ 482
HASCSGPPA A*GQ
Sbjct: 510 HASCSGPPAQA*GQ 469
Score = 22.1 bits (42), Expect(2) = 3e-081
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / -1
Query: 611 CDGAAAGP 588
CDG AAGP
Sbjct: 597 CDGTAAGP 574
Score = 21.7 bits (41), Expect(3) = 6e-063
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +1
Query: 579 PVQGPCRCSITV 614
P CRCSIT+
Sbjct: 565 PCTRACRCSITI 600
>gb|AW286991.2|AW286991 LG1_264_A11.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 458
Score = 256 bits (553), Expect = 3e-067
Identities = 113/121 (93%), Positives = 114/121 (94%)
Frame = -3 / -3
Query: 479 AMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK 300
AMTKVIAGTVFCIAEA*VGDR*YR RR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK
Sbjct: 456 AMTKVIAGTVFCIAEA*VGDR*YRXRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK 277
Query: 299 *ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFSGAIVAAA 120
*ANGASKAREM FLYTMNTI L PMLSAALETMWNPARRNCRASTP +SFSFSGAI AA
Sbjct: 276 *ANGASKAREMTFLYTMNTILLTPMLSAALETMWNPARRNCRASTPMNSFSFSGAIAAAP 97
Query: 119 A 117
A
Sbjct: 96 A 94
Score = 210 bits (452), Expect = 2e-053
Identities = 89/94 (94%), Positives = 93/94 (98%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
HIVSRAALNMG+S+IVF+VYRN+ISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI
Sbjct: 176 HIVSRAALNMGVSKIVFIVYRNVISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 355
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMA 480
TANQGFYLL LYHLSPTYASAIQNTVPAITFVMA
Sbjct: 356 TANQGFYLLXLYHLSPTYASAIQNTVPAITFVMA 457
Score = 181 bits (390), Expect = 8e-045
Identities = 77/102 (75%), Positives = 80/102 (78%)
Frame = +3 / +1
Query: 174 PAVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREERQAATHLLFAGGV 353
PAVP GRVPH LQGGAQHG Q+DRVH VQE HLPRLARSVRLLPREERQ THLLFAGGV
Sbjct: 151 PAVPPGRVPHCLQGGAQHGRQQDRVHRVQERHLPRLARSVRLLPREERQTTTHLLFAGGV 330
Query: 354 LPASAVWDNCEXXXXXXXXXXXXTNLRLCDTEHRPRDHLRHG 479
ASAVWDN + TNLRLCDTEHRP +HLRHG
Sbjct: 331 FSASAVWDNSKPGLLPPXSVSPVTNLRLCDTEHRPCNHLRHG 456
Score = 133 bits (284), Expect(2) = 3e-047
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = -2 / -2
Query: 327 WRPVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
W VFLLEEVGERSEQGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 304 WWSVFLLEEVGERSEQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 131
Score = 108 bits (231), Expect(2) = 4e-030
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = +2 / +3
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSRRKTGRH 328
WQGST SPGRRSTWASARSCS CTGTSSPSPCSLRSPTSSRRKT H
Sbjct: 165 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCSLRSPTSSRRKTDHH 305
Score = 76.7 bits (161), Expect(2) = 3e-047
Identities = 32/37 (86%), Positives = 32/37 (86%)
Frame = -2 / -2
Query: 480 GHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYPT 370
GHDEGD DGVLYRRGVGW*QVIQ QEVEALV YPT
Sbjct: 457 GHDEGDCRDGVLYRRGVGW*QVIQTQEVEALVCCYPT 347
Score = 75.3 bits (158), Expect(2) = 8e-021
Identities = 37/63 (58%), Positives = 38/63 (60%)
Frame = -1 / -1
Query: 427 LVTGDTGPGGRSPGSQLSHTALAGRTPPAKRR*VAACLXXXXXXXXXXXXXXXXXSCTP* 248
LVTGDT GGRSPG LSHTALA +TPPAKRR*V CL SCT *
Sbjct: 404 LVTGDTDXGGRSPGLLLSHTALAEKTPPAKRR*VVVCLSSRGSRRTERARRGR*RSCTR* 225
Query: 247 TRS 239
TRS
Sbjct: 224 TRS 216
Score = 46.0 bits (94), Expect(2) = 8e-021
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 199 GTLPEGTAGPALRRAASASQEPS 131
GTLP GTAGPALR ASASQEPS
Sbjct: 176 GTLPGGTAGPALR*TASASQEPS 108
Score = 43.7 bits (89), Expect(2) = 4e-030
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +2 / +3
Query: 365 RCVG*LRTRASTSWACITCHQ 427
RCVG* +TRASTS CITCHQ
Sbjct: 342 RCVG*QQTRASTSXVCITCHQ 404
>gb|BG053797.1|BG053797 RHIZ2_9_H06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 255 bits (552), Expect = 4e-067
Identities = 112/120 (93%), Positives = 113/120 (94%)
Frame = -3 / -3
Query: 476 MTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK* 297
MTKVIAG VFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*
Sbjct: 454 MTKVIAGPVFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK* 275
Query: 296 ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFSGAIVAAAA 117
ANGASKAREM FLYTMNTI L PMLSAALETMWNPARRNCRASTP +SFSFSGAI AA A
Sbjct: 274 ANGASKAREMTFLYTMNTILLTPMLSAALETMWNPARRNCRASTPMNSFSFSGAIAAAPA 95
Score = 208 bits (448), Expect = 8e-053
Identities = 88/93 (94%), Positives = 92/93 (98%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
HIVSRAALNMG+S+IVF+VYRN+ISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI
Sbjct: 177 HIVSRAALNMGVSKIVFIVYRNVISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 356
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVM 477
TANQGFYLLGLYHLSPTYASAIQNT PAITFVM
Sbjct: 357 TANQGFYLLGLYHLSPTYASAIQNTGPAITFVM 455
Score = 177 bits (382), Expect = 1e-043
Identities = 75/101 (74%), Positives = 78/101 (77%)
Frame = +3 / +2
Query: 174 PAVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREERQAATHLLFAGGV 353
PAVP GRVPH LQGGAQHG Q+DRVH VQE HLPRLA SVRLLPREERQA THLLFAGGV
Sbjct: 152 PAVPPGRVPHCLQGGAQHGRQQDRVHRVQERHLPRLACSVRLLPREERQATTHLLFAGGV 331
Query: 354 LPASAVWDNCEXXXXXXXXXXXXTNLRLCDTEHRPRDHLRH 476
ASAVWDNC+ TNLRLCDTEHR +HLRH
Sbjct: 332 FSASAVWDNCKPGLLPPGSVSPVTNLRLCDTEHRSCNHLRH 454
Score = 134 bits (288), Expect(2) = 1e-046
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = -2 / -2
Query: 327 WRPVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
W PVFLLEEVGERS+QGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 305 WWPVFLLEEVGERSKQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 132
Score = 109 bits (232), Expect(2) = 8e-033
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = +2 / +1
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSRRKTGRH 328
WQGST SPGRRSTWASARSCS CTGTSSPSPC LRSPTSSRRKTG H
Sbjct: 166 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCLLRSPTSSRRKTGHH 306
Score = 84.5 bits (178), Expect(2) = 1e-023
Identities = 40/63 (63%), Positives = 41/63 (65%)
Frame = -1 / -1
Query: 427 LVTGDTGPGGRSPGSQLSHTALAGRTPPAKRR*VAACLXXXXXXXXXXXXXXXXXSCTP* 248
LVTGDT PGGRSPG QLSHTALA +TPPAKRR*V ACL SCT *
Sbjct: 405 LVTGDTDPGGRSPGLQLSHTALAEKTPPAKRR*VVACLSSRGSRRTEQARRGR*RSCTR* 226
Query: 247 TRS 239
TRS
Sbjct: 225 TRS 217
Score = 73.0 bits (153), Expect(2) = 1e-046
Identities = 31/36 (86%), Positives = 31/36 (86%)
Frame = -2 / -2
Query: 477 HDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYPT 370
HDEGD GVLYRRGVGW*QVIQ QEVEALV SYPT
Sbjct: 455 HDEGDCRTGVLYRRGVGW*QVIQTQEVEALVCSYPT 348
Score = 52.4 bits (108), Expect(2) = 8e-033
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +2 / +1
Query: 365 RCVG*LRTRASTSWACITCHQ 427
RCVG*L+TRASTSW CITCHQ
Sbjct: 343 RCVG*LQTRASTSWVCITCHQ 405
Score = 46.0 bits (94), Expect(2) = 1e-023
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 199 GTLPEGTAGPALRRAASASQEPS 131
GTLP GTAGPALR ASASQEPS
Sbjct: 177 GTLPGGTAGPALR*TASASQEPS 109
>gb|BE362203.1|BE362203 DG1_85_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 553
Score = 232 bits (500), Expect = 5e-060
Identities = 96/132 (72%), Positives = 114/132 (86%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSR ALNMGIS++VF VYRN+I+L LL PFAYFLEKKDRP LT + +++FFLLALCGI
Sbjct: 113 HVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFLEKKDRPQLTLNFVIQFFLLALCGI 292
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
TANQGFYLLGL + SPT+ASAIQN+VPAITF MAA LR+E+V L RR G+AKV GT+ +
Sbjct: 293 TANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACV 472
Query: 559 GGATVITLYKGP 594
GA+VITLYKGP
Sbjct: 473 AGASVITLYKGP 508
Score = 158 bits (339), Expect = 9e-038
Identities = 81/152 (53%), Positives = 90/152 (59%)
Frame = -3 / -2
Query: 593 GPLYRVMTVAPPMLTTVPTTLAXXXXXXXXXXXXXXTAAMTKVIAGTVFCIAEA*VGDR* 414
GPL VMT AP +VP TLA AAM KVIAGT F IA+A VGD
Sbjct: 507 GPL*SVMTDAPATHASVPATLATPSRRSSRTFSIRSAAAMAKVIAGTEFWIADANVGDVL 328
Query: 413 YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISL 234
P R* PWFAV+P SA RKN +K +VS GLSFFSRK*A G + M T T L
Sbjct: 327 SSPSR*NPWFAVMPQSARRKNWMTKLRVSCGLSFFSRK*AKGTRRQSAMMLR*TGKTSLL 148
Query: 233 MPMLSAALETMWNPARRNCRASTPTSSFSFSG 138
MPMLSA+ +T WNPA NC AS T S +FSG
Sbjct: 147 MPMLSASRDTTWNPA*PNCSASISTCSCAFSG 52
Score = 71.6 bits (150), Expect(2) = 5e-023
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = -2 / -1
Query: 324 RPVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQH 166
RPV LLE+VGE E+ E D+V V E +LADAHVER+P VEP ELQ QH
Sbjct: 238 RPVLLLEKVGEGDEEAERDDVAVDGEDELADAHVERQPRHHVEPRVAELQRQH 80
Score = 57.0 bits (118), Expect(2) = 5e-023
Identities = 32/72 (44%), Positives = 38/72 (52%)
Frame = -2 / -1
Query: 597 GRALVQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHDEGDRGDGVLYRRGVGW*Q 418
G ALV+ DG A R HLG + P Q LL P+ H EGD VL RR +
Sbjct: 511 GGALVERDDGRTRHARQRPGHLGHAVAPVQPDLLDPQRRRHGEGDCRHRVLDRRRERRRR 332
Query: 417 VIQAQEVEALVR 382
V+Q Q+VE LVR
Sbjct: 331 VVQPQQVEPLVR 296
>gb|CD463977.1|CD463977 ETH1_47_F04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 5', mRNA sequence
Length = 592
Score = 224 bits (484), Expect = 9e-058
Identities = 89/131 (67%), Positives = 113/131 (86%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSRAAL+MG+S++ F+VYRN +L ++AP AYFLEKKDRPPLT L+++FF+LA G+
Sbjct: 181 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 360
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
T QG Y+LGLY+LSPTY S IQN+VPAITFVMAAVLR+EQV++ RHGLAK+ GTV++I
Sbjct: 361 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIRSRHGLAKIAGTVITI 540
Query: 559 GGATVITLYKG 591
GAT+ITLYKG
Sbjct: 541 AGATIITLYKG 573
Score = 143 bits (306), Expect = 3e-033
Identities = 76/152 (50%), Positives = 88/152 (57%)
Frame = -3 / -3
Query: 590 PLYRVMTVAPPMLTTVPTTLAXXXXXXXXXXXXXXTAAMTKVIAGTVFCIAEA*VGDR*Y 411
PL RVM VAP M+ TVP A TAA+T VIAGT F + E *VGD+*Y
Sbjct: 572 PL*RVMMVAPAMVITVPAIFASPCLLLIFTCSILKTAAITNVIAGTEFWMTET*VGDK*Y 393
Query: 410 RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISLM 231
+PR * P V P +A+ K S K V GGLSFFSRK*A GA + FL T N I L
Sbjct: 392 KPRI*SPCVNVTPTAANMKKSIIKRNVRGGLSFFSRK*ATGAITSSAEPFL*TRNAILLT 213
Query: 230 PMLSAALETMWNPARRNCRASTPTSSFSFSGA 135
PM SAAL+T W PA ST +SF+F+ A
Sbjct: 212 PMSSAALDTTWKPAMSISSTSTAATSFTFAMA 117
Score = 69.3 bits (145), Expect(2) = 2e-023
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = -2 / -2
Query: 321 PVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQH 166
P+FLLEEVG RS + V V E LADAHVERRPG DVE + LQ QH
Sbjct: 303 PIFLLEEVGNRSNHKQCRAVSVDEERHLADAHVERRPGHDVEARYEHLQHQH 148
Score = 60.6 bits (126), Expect(2) = 2e-023
Identities = 26/71 (36%), Positives = 40/71 (56%)
Frame = -2 / -2
Query: 585 VQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHDEGDRGDGVLYRRGVGW*QVIQA 406
V+GYDG P +H A + QPM + ++L ++S H + D D VL R + W*QV+Q
Sbjct: 567 VEGYDGCPCYGNHSACYFCQPMSASNIYLFNSQNSSHHKCDCRDRVLDDRDISW*QVVQT 388
Query: 405 QEVEALVRSYP 373
+ ++ L P
Sbjct: 387 KNIKPLCECNP 355
>gb|CX611785.1|CX611785 ANR1_26_E06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 5', mRNA sequence
Length = 794
Score = 224 bits (484), Expect = 9e-058
Identities = 89/131 (67%), Positives = 113/131 (86%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSRAAL+MG+S++ F+VYRN +L ++AP AYFLEKKDRPPLT L+++FF+LA G+
Sbjct: 175 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 354
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
T QG Y+LGLY+LSPTY S IQN+VPAITFVMAAVLR+EQV++ RHGLAK+ GTV++I
Sbjct: 355 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIRSRHGLAKIAGTVITI 534
Query: 559 GGATVITLYKG 591
GAT+ITLYKG
Sbjct: 535 AGATIITLYKG 567
Score = 143 bits (306), Expect = 3e-033
Identities = 76/152 (50%), Positives = 88/152 (57%)
Frame = -3 / -1
Query: 590 PLYRVMTVAPPMLTTVPTTLAXXXXXXXXXXXXXXTAAMTKVIAGTVFCIAEA*VGDR*Y 411
PL RVM VAP M+ TVP A TAA+T VIAGT F + E *VGD+*Y
Sbjct: 566 PL*RVMMVAPAMVITVPAIFASPCLLLIFTCSILKTAAITNVIAGTEFWMTET*VGDK*Y 387
Query: 410 RPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISLM 231
+PR * P V P +A+ K S K V GGLSFFSRK*A GA + FL T N I L
Sbjct: 386 KPRI*SPCVNVTPTAANMKKSIIKRNVRGGLSFFSRK*ATGAITSSAEPFL*TRNAILLT 207
Query: 230 PMLSAALETMWNPARRNCRASTPTSSFSFSGA 135
PM SAAL+T W PA ST +SF+F+ A
Sbjct: 206 PMSSAALDTTWKPAMSISSTSTAATSFTFAMA 111
Score = 69.3 bits (145), Expect(2) = 2e-024
Identities = 31/52 (59%), Positives = 34/52 (65%)
Frame = -2 / -3
Query: 321 PVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQH 166
P+FLLEEVG RS + V V E LADAHVERRPG DVE + LQ QH
Sbjct: 297 PIFLLEEVGNRSNHKQCRAVSVDEERHLADAHVERRPGHDVEARYEHLQHQH 142
Score = 64.3 bits (134), Expect(2) = 2e-024
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = -2 / -3
Query: 585 VQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHDEGDRGDGVLYRRGVGW*QVIQA 406
V+GYDG P +H A + QPM + ++L ++S H + D GD VL R + W*QV+Q
Sbjct: 561 VEGYDGCPCYGNHSACYFCQPMSASNIYLFNSQNSSHHKCDCGDRVLDDRDISW*QVVQT 382
Query: 405 QEVEALVRSYP 373
+ ++ L P
Sbjct: 381 KNIKPLCECNP 349
>gb|CW039493.1|CW039493 104_272_10505533_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505533, DNA
sequence
Length = 698
Score = 205 bits (442), Expect = 5e-052
Identities = 90/143 (62%), Positives = 107/143 (74%)
Frame = +1 / -2
Query: 124 AATMAPEXXXXXXXXXXXXXXXXXXHIVSRAALNMGISEIVFMVYRNLISLALLAPFAYF 303
A +PE H+VSR ALNMG+S++VF VYRNLI+L LLAPFAYF
Sbjct: 430 APAKSPERARLHVAMLALQFGYAGFHVVSRLALNMGVSKLVFPVYRNLIALCLLAPFAYF 251
Query: 304 LEKKDRPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAA 483
LEKKDRP +T + L++FFLLALCGITANQGFYLLGL + SPT+ASAIQN+VPAITF MAA
Sbjct: 250 LEKKDRPAMTPAFLLQFFLLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAA 71
Query: 484 VLRLEQVDLSRRHGLAKVVGTVV 552
L +E+V L RR GLAKV GT++
Sbjct: 70 ALGIERVRLRRRDGLAKVAGTML 2
Score = 144 bits (309), Expect = 1e-033
Identities = 74/141 (52%), Positives = 82/141 (58%)
Frame = -3 / +3
Query: 545 VPTTLAXXXXXXXXXXXXXXTAAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVIPHS 366
VP TLA AAM KV+AGT F IA+A VGD P R*KPW AVIPHS
Sbjct: 9 VPATLASPSRRRRRTRSIPSAAAMAKVMAGTEFWIADANVGDVLSSPSR*KPWLAVIPHS 188
Query: 365 ASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPAR 186
A RKN + K V GLSFFSRK*ANGA + MR T T L PMLSA+ +T W PA
Sbjct: 189 ARRKNWSRKAGVMAGLSFFSRK*ANGARRQSAMRLR*TGKTSLLTPMLSASRDTTWKPAY 368
Query: 185 RNCRASTPTSSFSFSGAIVAA 123
NC AS T S + SG + A
Sbjct: 369 PNCSASIATCSRARSGDLAGA 431
Score = 76.2 bits (160), Expect(2) = 4e-023
Identities = 35/56 (62%), Positives = 38/56 (67%)
Frame = -2 / +2
Query: 321 PVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
PV LLEEVGER E+ E DEV V E +LADAHVER+PG VE ELQ QH Q
Sbjct: 233 PVLLLEEVGERGEEAERDEVAVDGEDELADAHVERQPGHHVEAGVPELQRQHRHVQ 400
Score = 52.8 bits (109), Expect(2) = 4e-023
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = -2 / +2
Query: 549 HRAHHLGQPMPPAQVHLL*PEDSGHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYP 373
HRA HL + +P ++ L + GH EGD D VL RR +V++ Q+VEALV P
Sbjct: 5 HRARHLSESIPASEADTLDTQRGGHGEGDGRDRVLDRRRERGRRVVEPQQVEALVGGDP 181
>gb|BF705218.1|BF705218 RHIZ2_2_B07.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 379
Score = 203 bits (437), Expect = 3e-051
Identities = 88/95 (92%), Positives = 89/95 (93%)
Frame = -3 / -1
Query: 401 R*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMRFLYTMNTISLMPML 222
R*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREM FLYTMNTI L PML
Sbjct: 379 R*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSRK*ANGASKAREMTFLYTMNTILLTPML 200
Query: 221 SAALETMWNPARRNCRASTPTSSFSFSGAIVAAAA 117
SAALETMWNPARRNCRASTP +SFSFSGAI AA A
Sbjct: 199 SAALETMWNPARRNCRASTPMNSFSFSGAIAAAPA 95
Score = 151 bits (324), Expect = 1e-035
Identities = 63/67 (94%), Positives = 67/67 (100%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
HIVSRAALNMG+S+IVF+VYRN+ISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI
Sbjct: 177 HIVSRAALNMGVSKIVFIVYRNVISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 356
Query: 379 TANQGFY 399
TANQGFY
Sbjct: 357 TANQGFY 377
Score = 145 bits (312), Expect(2) = 3e-036
Identities = 60/71 (84%), Positives = 62/71 (87%)
Frame = +3 / +2
Query: 174 PAVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREERQAATHLLFAGGV 353
PAVP GRVPH LQGGAQHG Q+DRVH VQE HLPRLA SVRLLPREERQA THLLFAGGV
Sbjct: 152 PAVPPGRVPHCLQGGAQHGRQQDRVHRVQERHLPRLACSVRLLPREERQATTHLLFAGGV 331
Query: 354 LPASAVWDNCE 386
ASAVWDNC+
Sbjct: 332 FSASAVWDNCK 364
Score = 134 bits (288), Expect(2) = 2e-031
Identities = 52/58 (89%), Positives = 56/58 (96%)
Frame = -2 / -3
Query: 327 WRPVFLLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
W PVFLLEEVGERS+QGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 305 WWPVFLLEEVGERSKQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 132
Score = 109 bits (232), Expect = 5e-023
Identities = 43/47 (91%), Positives = 43/47 (91%)
Frame = +2 / +1
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSRRKTGRH 328
WQGST SPGRRSTWASARSCS CTGTSSPSPC LRSPTSSRRKTG H
Sbjct: 166 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCLLRSPTSSRRKTGHH 306
Score = 27.2 bits (53), Expect(2) = 3e-036
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2 / +1
Query: 365 RCVG*LRTRAST 400
RCVG*L+TRAST
Sbjct: 343 RCVG*LQTRAST 378
Score = 21.7 bits (41), Expect(2) = 2e-031
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / -3
Query: 399 VEALVRSYPT 370
VEALV SYPT
Sbjct: 377 VEALVCSYPT 348
>gb|CW381595.1|CW381595 fsbb001f063b09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063b09, DNA
sequence
Length = 672
Score = 92.3 bits (195), Expect(4) = 5e-047
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1 / -3
Query: 376 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 492
ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR
Sbjct: 484 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 368
Score = 84.5 bits (178), Expect(4) = 5e-044
Identities = 35/40 (87%), Positives = 35/40 (87%)
Frame = -2 / +2
Query: 492 PEDSGHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYP 373
PEDSGHDEGD DGVLYRRGVGW*QVIQ QEVEALV YP
Sbjct: 368 PEDSGHDEGDCRDGVLYRRGVGW*QVIQTQEVEALVCCYP 487
Score = 83.5 bits (176), Expect(4) = 7e-035
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = -3 / +3
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 375
AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI
Sbjct: 378 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 485
Score = 79.4 bits (167), Expect(4) = 5e-047
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = +1 / -2
Query: 472 VMAAVLRLEQVDLSRRHGLAKVVGTVVSIGGATVITLYKG 591
V+A RLEQVDLSRRHG+AKVVGTVVSIGGATVITLYKG
Sbjct: 284 VLALNCRLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKG 165
Score = 77.1 bits (162), Expect(4) = 5e-044
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = -2 / +3
Query: 594 RALVQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHD 472
+ALVQGY G P+DAHHRAHHLG PMPPAQVHLL P D
Sbjct: 162 QALVQGYHGRPTDAHHRAHHLGHPMPPAQVHLLKPAIKSKD 284
Score = 68.4 bits (143), Expect(4) = 1e-037
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +2 / -3
Query: 506 T*AGGMGWPRWWARW*ASEGPPS*PCTRA 592
T*AGGMGWPRWWARW*AS G P *PCTRA
Sbjct: 250 T*AGGMGWPRWWARW*ASVGRP**PCTRA 164
Score = 59.7 bits (124), Expect(4) = 1e-037
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3 / -2
Query: 423 TNLRLCDTEHRPRDHLRHGRCPQ 491
TNLRLCDTEHRP +HLRHGRCPQ
Sbjct: 437 TNLRLCDTEHRPCNHLRHGRCPQ 369
Score = 53.8 bits (111), Expect(4) = 5e-047
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / -2
Query: 310 KKDRPPLTFSLLVEFFLLALCG 375
+KDRPPLTFSLLVEFFLLALCG
Sbjct: 659 RKDRPPLTFSLLVEFFLLALCG 594
Score = 51.5 bits (106), Expect(4) = 5e-044
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3 / +1
Query: 374 PHSASRKNSTSKEKVSGGLSFFSR 303
PHSASRKNSTSKEKVSGGLSF +
Sbjct: 595 PHSASRKNSTSKEKVSGGLSFLKQ 666
Score = 50.1 bits (103), Expect(4) = 7e-035
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / +1
Query: 590 PLYRVMTVAPPMLTTVPTTLA 528
PLYRV+TVAPPMLTTVPTTLA
Sbjct: 166 PLYRVITVAPPMLTTVPTTLA 228
Score = 44.1 bits (90), Expect(4) = 1e-037
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 309 EERQAATHLLFAGGVLPASAVW 374
+ERQ THLLFAGGV ASAVW
Sbjct: 660 QERQTTTHLLFAGGVFSASAVW 595
Score = 42.3 bits (86), Expect(4) = 7e-035
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 379 LSHTALAGRTPPAKRR*VAACL 314
L+HTALA +TPPAKRR*V CL
Sbjct: 590 LTHTALAEKTPPAKRR*VVVCL 655
Score = 41.4 bits (84), Expect(4) = 1e-037
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / -1
Query: 374 G*LRTRASTSWACITCHQ 427
G* +TRASTSW CITCHQ
Sbjct: 486 G*QQTRASTSWVCITCHQ 433
Score = 28.1 bits (55), Expect(4) = 7e-035
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +2
Query: 523 HASCSGPPALA 491
HASCSGPPA A
Sbjct: 233 HASCSGPPAQA 265
Score = 22.1 bits (42), Expect(4) = 5e-044
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / +2
Query: 611 CDGAAAGP 588
CDG AAGP
Sbjct: 146 CDGTAAGP 169
Score = 21.7 bits (41), Expect(4) = 5e-047
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -3
Query: 579 PVQGPCRCSITV 614
P CRCSIT+
Sbjct: 178 PCTRACRCSITI 143
>gb|BG241298.1|BG241298 OV1_40_F02.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 499
Score = 188 bits (405), Expect = 7e-047
Identities = 75/111 (67%), Positives = 95/111 (85%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSRAAL+MG+S++ F+VYRN +L ++AP AYFLEKKDRPPLT L+++FF+LA G+
Sbjct: 165 HVVSRAALDMGVSKMAFLVYRNGSALLVIAPVAYFLEKKDRPPLTLRLMIDFFMLAAVGV 344
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLA 531
T QG Y+LGLY+LSPTY S IQN+VPAITFVMAAVLR+EQV++ RHGLA
Sbjct: 345 TFTQGLYILGLYYLSPTYVSVIQNSVPAITFVMAAVLRIEQVNIKSRHGLA 497
Score = 122 bits (262), Expect = 4e-027
Identities = 62/116 (53%), Positives = 73/116 (62%)
Frame = -3 / -1
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSR 303
AA+T VIAGT F + E *VGD+*Y+PR * P V P +A+ K S K V GGLSFFSR
Sbjct: 448 AAITNVIAGTEFWMTET*VGDK*YKPRI*SPCVNVTPTAANMKKSIIKRNVRGGLSFFSR 269
Query: 302 K*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFSGA 135
K*A GA + FL T N I L PM SAAL+T W PA ST +SF+F+ A
Sbjct: 268 K*ATGAITSSAEPFL*TRNAILLTPMSSAALDTTWKPAMSISSTSTAATSFTFAMA 101
>gb|CW228638.1|CW228638 104_668_11206487_148_37248_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206487, DNA
sequence
Length = 570
Score = 131 bits (280), Expect(3) = 2e-046
Identities = 57/68 (83%), Positives = 60/68 (88%)
Frame = -3 / +3
Query: 320 LSFFSRK*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFS 141
++ FSRK*ANGASKAREM FLYTMNTI L PMLSAALETMWNPARRNC ASTP +SFSFS
Sbjct: 357 VTHFSRK*ANGASKAREMTFLYTMNTILLTPMLSAALETMWNPARRNCTASTPMNSFSFS 536
Query: 140 GAIVAAAA 117
GAI AA A
Sbjct: 537 GAIAAAPA 560
Score = 122 bits (262), Expect(3) = 1e-038
Identities = 48/53 (90%), Positives = 51/53 (96%)
Frame = -2 / +2
Query: 312 LLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
LLEEVGERSEQGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+EL GQHSDEQ
Sbjct: 365 LLEEVGERSEQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELHGQHSDEQ 523
Score = 98.7 bits (209), Expect(3) = 2e-037
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +2 / -1
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSR 310
WQGST SPGRRSTWASARSCS CTGTSSPSPCSLRSPTSSR
Sbjct: 489 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCSLRSPTSSR 367
Score = 95.5 bits (202), Expect(3) = 3e-033
Identities = 40/47 (85%), Positives = 41/47 (87%)
Frame = +3 / -2
Query: 177 AVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREER 317
AVP GRVPH LQGGAQHG Q+DRVH VQE HLPRLARSVRLLPRE R
Sbjct: 500 AVPPGRVPHCLQGGAQHGRQQDRVHRVQERHLPRLARSVRLLPREVR 360
Score = 53.8 bits (111), Expect(3) = 2e-037
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / -2
Query: 310 KKDRPPLTFSLLVEFFLLALCG 375
+KDRPPLTFSLLVEFFLLALCG
Sbjct: 242 RKDRPPLTFSLLVEFFLLALCG 177
Score = 51.5 bits (106), Expect(3) = 2e-046
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3 / +1
Query: 374 PHSASRKNSTSKEKVSGGLSFFSR 303
PHSASRKNSTSKEKVSGGLSF +
Sbjct: 178 PHSASRKNSTSKEKVSGGLSFLKQ 249
Score = 44.6 bits (91), Expect(3) = 2e-037
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1 / -3
Query: 376 ITANQGFYLLGLYHLSP 426
ITANQGFYLLGLYHLSP
Sbjct: 67 ITANQGFYLLGLYHLSP 17
Score = 44.1 bits (90), Expect(3) = 3e-033
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 309 EERQAATHLLFAGGVLPASAVW 374
+ERQ THLLFAGGV ASAVW
Sbjct: 243 QERQTTTHLLFAGGVFSASAVW 178
Score = 42.8 bits (87), Expect(3) = 2e-046
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = -3 / +3
Query: 428 VGDR*YRPRR*KPWFAVI 375
+GDR*YRP+R*KPWFAVI
Sbjct: 15 LGDR*YRPKR*KPWFAVI 68
Score = 42.3 bits (86), Expect(3) = 1e-038
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 379 LSHTALAGRTPPAKRR*VAACL 314
L+HTALA +TPPAKRR*V CL
Sbjct: 173 LTHTALAEKTPPAKRR*VVVCL 238
Score = 41.4 bits (84), Expect(3) = 3e-033
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / -1
Query: 374 G*LRTRASTSWACITCHQ 427
G* +TRASTSW CITCHQ
Sbjct: 69 G*QQTRASTSWVCITCHQ 16
Score = 35.4 bits (71), Expect(3) = 1e-038
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -2 / +2
Query: 426 W*QVIQAQEVEALVRSYP 373
W*QVIQ QEVEALV YP
Sbjct: 17 W*QVIQTQEVEALVCCYP 70
>gb|BE360355.1|BE360355 DG1_63_A09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 517
Score = 184 bits (397), Expect = 9e-046
Identities = 76/100 (76%), Positives = 89/100 (89%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSR ALNMGIS++VF VYRN+I+L LL PFAYFLEKKDRP LT + +++FFLLALCGI
Sbjct: 216 HVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFLEKKDRPQLTLNFVIQFFLLALCGI 395
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLE 498
TANQGFYLLGL + SPT+ASAIQN+VPAITF MAA LR+E
Sbjct: 396 TANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIE 515
Score = 137 bits (293), Expect = 2e-031
Identities = 68/115 (59%), Positives = 76/115 (66%)
Frame = -3 / -1
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVIPHSASRKNSTSKEKVSGGLSFFSR 303
AAM KVIAGT F IA+A VGD P R* PWFAV+P SA RKN +K +VS GLSFFSR
Sbjct: 499 AAMAKVIAGTEFWIADANVGDVLSSPSR*NPWFAVMPQSARRKNWMTKLRVSCGLSFFSR 320
Query: 302 K*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFSG 138
K*A G + M T T LMPMLSA+ +T WNPA NC AS T S +FSG
Sbjct: 319 K*AKGTRRQSAMMLR*TGKTSLLMPMLSASRDTTWNPA*PNCSASIATCSCAFSG 155
>gb|CW381596.1|CW381596 fsbb001f063b09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063b09, DNA
sequence
Length = 702
Score = 133 bits (286), Expect(2) = 6e-040
Identities = 58/68 (85%), Positives = 61/68 (89%)
Frame = -3 / -3
Query: 320 LSFFSRK*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFS 141
++ FSRK*ANGASKAREM FLYTMNTI L PMLSAALETMWNPARRNCRASTP +SFSFS
Sbjct: 505 VTHFSRK*ANGASKAREMTFLYTMNTILLTPMLSAALETMWNPARRNCRASTPMNSFSFS 326
Query: 140 GAIVAAAA 117
GAI AA A
Sbjct: 325 GAIAAAPA 302
Score = 125 bits (267), Expect(2) = 4e-034
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = -2 / -2
Query: 312 LLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
LLEEVGERSEQGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 497 LLEEVGERSEQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 339
Score = 98.7 bits (209), Expect(2) = 1e-026
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +2 / +1
Query: 188 WQGSTSSPGRRSTWASARSCSWCTGTSSPSPCSLRSPTSSR 310
WQGST SPGRRSTWASARSCS CTGTSSPSPCSLRSPTSSR
Sbjct: 373 WQGSTLSPGRRSTWASARSCSSCTGTSSPSPCSLRSPTSSR 495
Score = 98.7 bits (209), Expect(2) = 4e-030
Identities = 41/48 (85%), Positives = 42/48 (87%)
Frame = +3 / +2
Query: 174 PAVPSGRVPHRLQGGAQHGHQRDRVHGVQEPHLPRLARSVRLLPREER 317
PAVP GRVPH LQGGAQHG Q+DRVH VQE HLPRLARSVRLLPRE R
Sbjct: 359 PAVPPGRVPHCLQGGAQHGRQQDRVHRVQERHLPRLARSVRLLPREVR 502
Score = 53.8 bits (111), Expect(2) = 4e-030
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / +2
Query: 310 KKDRPPLTFSLLVEFFLLALCG 375
+KDRPPLTFSLLVEFFLLALCG
Sbjct: 620 RKDRPPLTFSLLVEFFLLALCG 685
Score = 51.5 bits (106), Expect(2) = 6e-040
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3 / -1
Query: 374 PHSASRKNSTSKEKVSGGLSFFSR 303
PHSASRKNSTSKEKVSGGLSF +
Sbjct: 684 PHSASRKNSTSKEKVSGGLSFLKQ 613
Score = 44.1 bits (90), Expect(2) = 1e-026
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / +1
Query: 309 EERQAATHLLFAGGVLPASAVW 374
+ERQ THLLFAGGV ASAVW
Sbjct: 619 QERQTTTHLLFAGGVFSASAVW 684
Score = 42.3 bits (86), Expect(2) = 4e-034
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / -2
Query: 379 LSHTALAGRTPPAKRR*VAACL 314
L+HTALA +TPPAKRR*V CL
Sbjct: 689 LTHTALAEKTPPAKRR*VVVCL 624
>gb|CW028177.1|CW028177 104_255_10498940_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498940, DNA
sequence
Length = 539
Score = 92.3 bits (195), Expect(3) = 5e-037
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1 / +1
Query: 376 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 492
ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR
Sbjct: 265 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 381
Score = 84.5 bits (178), Expect(3) = 2e-033
Identities = 35/40 (87%), Positives = 35/40 (87%)
Frame = -2 / -3
Query: 492 PEDSGHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYP 373
PEDSGHDEGD DGVLYRRGVGW*QVIQ QEVEALV YP
Sbjct: 381 PEDSGHDEGDCRDGVLYRRGVGW*QVIQTQEVEALVCCYP 262
Score = 83.5 bits (176), Expect(3) = 3e-025
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = -3 / -1
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 375
AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI
Sbjct: 371 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 264
Score = 59.7 bits (124), Expect(4) = 1e-029
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3 / +3
Query: 423 TNLRLCDTEHRPRDHLRHGRCPQ 491
TNLRLCDTEHRP +HLRHGRCPQ
Sbjct: 312 TNLRLCDTEHRPCNHLRHGRCPQ 380
Score = 55.1 bits (114), Expect(3) = 5e-037
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1 / +3
Query: 310 KKDRPPLTFSLLVEFFLLALCG 375
KKDRPPLTFSLLVEFFLLALCG
Sbjct: 90 KKDRPPLTFSLLVEFFLLALCG 155
Score = 51.5 bits (106), Expect(3) = 2e-033
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3 / -2
Query: 374 PHSASRKNSTSKEKVSGGLSFFSR 303
PHSASRKNSTSKEKVSGGLSF +
Sbjct: 154 PHSASRKNSTSKEKVSGGLSFLKQ 83
Score = 46.4 bits (95), Expect(3) = 5e-037
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1 / +3
Query: 472 VMAAVLRLEQVDLSRRHGLAKVVGT 546
V+A RLEQVDLSRRHG+AKVVGT
Sbjct: 465 VLALNCRLEQVDLSRRHGVAKVVGT 539
Score = 46.0 bits (94), Expect(3) = 2e-033
Identities = 18/25 (72%), Positives = 18/25 (72%)
Frame = -2 / -1
Query: 546 RAHHLGQPMPPAQVHLL*PEDSGHD 472
RAHHLG PMPPAQVHLL P D
Sbjct: 539 RAHHLGHPMPPAQVHLLKPAIKSKD 465
Score = 44.1 bits (90), Expect(4) = 1e-029
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / +2
Query: 309 EERQAATHLLFAGGVLPASAVW 374
+ERQ THLLFAGGV ASAVW
Sbjct: 89 QERQTTTHLLFAGGVFSASAVW 154
Score = 42.3 bits (86), Expect(3) = 3e-025
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / -3
Query: 379 LSHTALAGRTPPAKRR*VAACL 314
L+HTALA +TPPAKRR*V CL
Sbjct: 159 LTHTALAEKTPPAKRR*VVVCL 94
Score = 41.4 bits (84), Expect(4) = 1e-029
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / +2
Query: 374 G*LRTRASTSWACITCHQ 427
G* +TRASTSW CITCHQ
Sbjct: 263 G*QQTRASTSWVCITCHQ 316
Score = 40.5 bits (82), Expect(4) = 1e-029
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / +1
Query: 506 T*AGGMGWPRWWA 544
T*AGGMGWPRWWA
Sbjct: 499 T*AGGMGWPRWWA 537
Score = 28.1 bits (55), Expect(3) = 3e-025
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / -3
Query: 523 HASCSGPPALA 491
HASCSGPPA A
Sbjct: 516 HASCSGPPAQA 484
>gb|CW232579.1|CW232579 104_685_11212893_116_37365_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212893, DNA
sequence
Length = 685
Score = 92.3 bits (195), Expect(3) = 3e-036
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1 / +1
Query: 376 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 492
ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR
Sbjct: 1 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 117
Score = 81.7 bits (172), Expect(3) = 3e-033
Identities = 35/35 (100%), Positives = 35/35 (100%)
Frame = -3 / -3
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAV 378
AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAV
Sbjct: 107 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAV 3
Score = 81.3 bits (171), Expect(3) = 6e-027
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = -2 / -2
Query: 492 PEDSGHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSY 376
PEDSGHDEGD DGVLYRRGVGW*QVIQ QEVEALV Y
Sbjct: 117 PEDSGHDEGDCRDGVLYRRGVGW*QVIQTQEVEALVCCY 1
Score = 79.4 bits (167), Expect(3) = 3e-036
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = +1 / +3
Query: 472 VMAAVLRLEQVDLSRRHGLAKVVGTVVSIGGATVITLYKG 591
V+A RLEQVDLSRRHG+AKVVGTVVSIGGATVITLYKG
Sbjct: 201 VLALNCRLEQVDLSRRHGVAKVVGTVVSIGGATVITLYKG 320
Score = 77.1 bits (162), Expect(3) = 3e-033
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = -2 / -3
Query: 594 RALVQGYDGGPSDAHHRAHHLGQPMPPAQVHLL*PEDSGHD 472
+ALVQGY G P+DAHHRAHHLG PMPPAQVHLL P D
Sbjct: 323 QALVQGYHGRPTDAHHRAHHLGHPMPPAQVHLLKPAIKSKD 201
Score = 68.4 bits (143), Expect(3) = 3e-029
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +2 / +1
Query: 506 T*AGGMGWPRWWARW*ASEGPPS*PCTRA 592
T*AGGMGWPRWWARW*AS G P *PCTRA
Sbjct: 235 T*AGGMGWPRWWARW*ASVGRP**PCTRA 321
Score = 59.7 bits (124), Expect(3) = 3e-029
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3 / +3
Query: 423 TNLRLCDTEHRPRDHLRHGRCPQ 491
TNLRLCDTEHRP +HLRHGRCPQ
Sbjct: 48 TNLRLCDTEHRPCNHLRHGRCPQ 116
Score = 50.1 bits (103), Expect(3) = 6e-027
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -3 / -1
Query: 590 PLYRVMTVAPPMLTTVPTTLA 528
PLYRV+TVAPPMLTTVPTTLA
Sbjct: 319 PLYRVITVAPPMLTTVPTTLA 257
Score = 39.1 bits (79), Expect(3) = 3e-029
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +2 / +2
Query: 383 RTRASTSWACITCHQ 427
+TRASTSW CITCHQ
Sbjct: 8 QTRASTSWVCITCHQ 52
Score = 28.1 bits (55), Expect(3) = 6e-027
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / -2
Query: 523 HASCSGPPALA 491
HASCSGPPA A
Sbjct: 252 HASCSGPPAQA 220
Score = 22.1 bits (42), Expect(3) = 3e-033
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / -2
Query: 611 CDGAAAGP 588
CDG AAGP
Sbjct: 339 CDGTAAGP 316
Score = 21.7 bits (41), Expect(3) = 3e-036
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +1
Query: 579 PVQGPCRCSITV 614
P CRCSIT+
Sbjct: 307 PCTRACRCSITI 342
>gb|CW028178.1|CW028178 104_255_10498940_116_30393 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498940, DNA
sequence
Length = 539
Score = 92.3 bits (195), Expect(3) = 6e-036
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1 / -3
Query: 376 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 492
ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR
Sbjct: 273 ITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLR 157
Score = 84.5 bits (178), Expect(3) = 7e-033
Identities = 35/40 (87%), Positives = 35/40 (87%)
Frame = -2 / +1
Query: 492 PEDSGHDEGDRGDGVLYRRGVGW*QVIQAQEVEALVRSYP 373
PEDSGHDEGD DGVLYRRGVGW*QVIQ QEVEALV YP
Sbjct: 157 PEDSGHDEGDCRDGVLYRRGVGW*QVIQTQEVEALVCCYP 276
Score = 83.5 bits (176), Expect(3) = 3e-025
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = -3 / +2
Query: 482 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 375
AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI
Sbjct: 167 AAMTKVIAGTVFCIAEA*VGDR*YRPRR*KPWFAVI 274
Score = 59.7 bits (124), Expect(4) = 1e-029
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3 / -2
Query: 423 TNLRLCDTEHRPRDHLRHGRCPQ 491
TNLRLCDTEHRP +HLRHGRCPQ
Sbjct: 226 TNLRLCDTEHRPCNHLRHGRCPQ 158
Score = 53.8 bits (111), Expect(3) = 6e-036
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1 / -2
Query: 310 KKDRPPLTFSLLVEFFLLALCG 375
+KDRPPLTFSLLVEFFLLALCG
Sbjct: 448 RKDRPPLTFSLLVEFFLLALCG 383
Score = 51.5 bits (106), Expect(3) = 7e-033
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -3 / +3
Query: 374 PHSASRKNSTSKEKVSGGLSFFSR 303
PHSASRKNSTSKEKVSGGLSF +
Sbjct: 384 PHSASRKNSTSKEKVSGGLSFLKQ 455
Score = 44.1 bits (90), Expect(3) = 6e-036
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +1 / -2
Query: 472 VMAAVLRLEQVDLSRRHGLAKVVG 543
V+A RLEQVDLSRRHG+AKVVG
Sbjct: 73 VLALNCRLEQVDLSRRHGVAKVVG 2
Score = 44.1 bits (90), Expect(4) = 1e-029
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3 / -1
Query: 309 EERQAATHLLFAGGVLPASAVW 374
+ERQ THLLFAGGV ASAVW
Sbjct: 449 QERQTTTHLLFAGGVFSASAVW 384
Score = 43.7 bits (89), Expect(3) = 7e-033
Identities = 17/24 (70%), Positives = 17/24 (70%)
Frame = -2 / +2
Query: 543 AHHLGQPMPPAQVHLL*PEDSGHD 472
AHHLG PMPPAQVHLL P D
Sbjct: 2 AHHLGHPMPPAQVHLLKPAIKSKD 73
Score = 42.3 bits (86), Expect(3) = 3e-025
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -1 / +1
Query: 379 LSHTALAGRTPPAKRR*VAACL 314
L+HTALA +TPPAKRR*V CL
Sbjct: 379 LTHTALAEKTPPAKRR*VVVCL 444
Score = 41.4 bits (84), Expect(4) = 1e-029
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2 / -1
Query: 374 G*LRTRASTSWACITCHQ 427
G* +TRASTSW CITCHQ
Sbjct: 275 G*QQTRASTSWVCITCHQ 222
Score = 40.5 bits (82), Expect(4) = 1e-029
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2 / -3
Query: 506 T*AGGMGWPRWWA 544
T*AGGMGWPRWWA
Sbjct: 39 T*AGGMGWPRWWA 1
Score = 28.1 bits (55), Expect(3) = 3e-025
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 523 HASCSGPPALA 491
HASCSGPPA A
Sbjct: 22 HASCSGPPAQA 54
>gb|CD221400.1|CD221400 CCC1_54_H10.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_54_H10_A007 5', mRNA sequence
Length = 628
Score = 149 bits (319), Expect = 5e-035
Identities = 60/132 (45%), Positives = 92/132 (69%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
+++++ +LN G+S V +VYR+ + +APFA LE+K RP +T+S+ ++ F+LAL G
Sbjct: 226 NVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMTWSVFLQIFVLALLGP 405
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
+Q FY GL PT+A A+ N +PA+TFVMA + R+E+VDL + AKV GT+V++
Sbjct: 406 VIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLKKVRCQAKVAGTLVTV 585
Query: 559 GGATVITLYKGP 594
GA ++TLYKGP
Sbjct: 586 AGAMMMTLYKGP 621
>gb|CX613388.1|CX613388 GABR1_7_H05.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_H05_A002 5', mRNA sequence
Length = 757
Score = 149 bits (319), Expect = 5e-035
Identities = 60/132 (45%), Positives = 92/132 (69%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
+++++ +LN G+S V +VYR+ + +APFA LE+K RP +T+S+ ++ F+LAL G
Sbjct: 215 NVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMTWSVFLQIFVLALLGP 394
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
+Q FY GL PT+A A+ N +PA+TFVMA + R+E+VDL + AKV GT+V++
Sbjct: 395 VIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLKKVRCQAKVAGTLVTV 574
Query: 559 GGATVITLYKGP 594
GA ++TLYKGP
Sbjct: 575 AGAMMMTLYKGP 610
>gb|CX618974.1|CX618974 GABR1_42_F12.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_42_F12_A002 5', mRNA sequence
Length = 622
Score = 142 bits (304), Expect = 6e-033
Identities = 56/133 (42%), Positives = 87/133 (65%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
+ ++ A N G++ V++ YR+L+ L+ PFAY+ EK RP +T L +E F+L+L G+
Sbjct: 169 YFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEKGLRPKMTLMLFMEIFVLSLLGV 348
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
+ Y L + SPT+ +++ NT+ ++TFV+A +LR+E VD+ GLAK+ GTVVS
Sbjct: 349 SLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGLAKIAGTVVSF 528
Query: 559 GGATVITLYKGPA 597
G T +TLYKG A
Sbjct: 529 AGVTTMTLYKGAA 567
>gb|AW565320.1|AW565320 LG1_342_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 581
Score = 141 bits (302), Expect = 1e-032
Identities = 52/131 (39%), Positives = 95/131 (72%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+++++ LN+G++++VF VYR+L++ A+LAP A+ E++ RPP+T LL F LL G+
Sbjct: 99 HVLTKSVLNVGMNQVVFCVYRDLLAFAVLAPVAFLRERRVRPPVTPQLLASFALLGFTGL 278
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
N +L+GL + + +YA+A Q ++P +TF++AA++ +E +++ + G+ KV+GTVV +
Sbjct: 279 YGNPLLFLVGLRYTNASYAAAFQPSIPVLTFLLAAIVGVEAINIFTKDGVLKVIGTVVCV 458
Query: 559 GGATVITLYKG 591
GA ++ LY+G
Sbjct: 459 SGAILMALYRG 491
>gb|CD428455.1|CD428455 ETH1_31_B03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_31_B03_A002 5', mRNA sequence
Length = 604
Score = 137 bits (294), Expect = 1e-031
Identities = 56/128 (43%), Positives = 88/128 (68%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
+++++ +LN G+S V +VYR+ + +APFA LE+K RP +T+S+ ++ F+LAL G
Sbjct: 221 NVITKVSLNHGMSHYVLVVYRHAFATISIAPFALILERKVRPKMTWSVFLQIFVLALLGP 400
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
+Q FY GL PT+A A+ N +PA+TFVMA + R+E+VDL + AKV GT+V++
Sbjct: 401 VIDQNFYYAGLKFTGPTFACAMSNILPAMTFVMAVIFRMEKVDLKKVRCQAKVAGTLVTV 580
Query: 559 GGATVITL 582
GA ++TL
Sbjct: 581 AGAMMMTL 604
>gb|CW056516.1|CW056516 104_298_10517725_114_30156 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517725, DNA
sequence
Length = 493
Score = 133 bits (286), Expect = 2e-030
Identities = 58/68 (85%), Positives = 61/68 (89%)
Frame = -3 / +2
Query: 320 LSFFSRK*ANGASKAREMRFLYTMNTISLMPMLSAALETMWNPARRNCRASTPTSSFSFS 141
++ FSRK*ANGASKAREM FLYTMNTI L PMLSAALETMWNPARRNCRASTP +SFSFS
Sbjct: 89 VTHFSRK*ANGASKAREMTFLYTMNTILLTPMLSAALETMWNPARRNCRASTPMNSFSFS 268
Query: 140 GAIVAAAA 117
GAI AA A
Sbjct: 269 GAIAAAPA 292
Score = 125 bits (267), Expect = 7e-028
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = -2 / +1
Query: 312 LLEEVGERSEQGEGDEVPVHHEHDLADAHVERRPGDDVEPCQKELQGQHSDEQ 154
LLEEVGERSEQGEGD+VPVH EHDLADAHVERRPGD+VEPCQ+ELQGQHSDEQ
Sbjct: 97 LLEEVGERSEQGEGDDVPVHDEHDLADAHVERRPGDNVEPCQEELQGQHSDEQ 255
>gb|CN126691.1|CN126691 RHOH1_18_D06.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D06_A002 5', mRNA sequence
Length = 851
Score = 133 bits (285), Expect = 2e-030
Identities = 52/131 (39%), Positives = 87/131 (66%)
Frame = +1 / +2
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
++S A+L G+S V +VYRN+ + ++APFA + E+K RP L+ S+ ++ L L
Sbjct: 188 LISVASLRQGMSHYVLVVYRNVAAAIVMAPFALWFERKTRPKLSLSVFIKILALGLLEPV 367
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+Q F +G+ S ++ASA+ N +PA+TFV A +LR+E+++ R LAK+ GT +++G
Sbjct: 368 LDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRMERIETKERRSLAKIAGTAITVG 547
Query: 562 GATVITLYKGP 594
GA ++ L+KGP
Sbjct: 548 GALLMILFKGP 580
>gb|CX623274.1|CX623274 GABR1_68_E09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_E09_A002 5', mRNA sequence
Length = 610
Score = 133 bits (285), Expect = 2e-030
Identities = 52/131 (39%), Positives = 87/131 (66%)
Frame = +1 / +2
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
++S A+L G+S V +VYRN+ + ++APFA + E+K RP L+ S+ ++ L L
Sbjct: 185 LISVASLRQGMSHYVLVVYRNVAAAIVMAPFALWFERKTRPKLSLSVFIKILALGLLEPV 364
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+Q F +G+ S ++ASA+ N +PA+TFV A +LR+E+++ R LAK+ GT +++G
Sbjct: 365 LDQNFIYMGVNSTSASFASALTNILPALTFVNAIILRMERIETKERRSLAKIAGTAITVG 544
Query: 562 GATVITLYKGP 594
GA ++ L+KGP
Sbjct: 545 GALLMILFKGP 577
>gb|CD206727.1|CD206727 HS1_24_H03.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_24_H03_A012 5', mRNA sequence
Length = 647
Score = 133 bits (284), Expect = 3e-030
Identities = 57/136 (41%), Positives = 82/136 (60%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
++VS+AA N G+S VF+ YR + ALL P A LE+++ PP++F L ++ F AL G
Sbjct: 193 YVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFLKLFFYALLGN 372
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
T + Y + L + S T ASA N+VP +TF +A +LRLE V L G+AK G + +
Sbjct: 373 TLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGMAKAAGVALCL 552
Query: 559 GGATVITLYKGPAAAP 606
G I LY GP+ +P
Sbjct: 553 AGVLTIALYTGPSMSP 600
>gb|CN149587.1|CN149587 WOUND1_63_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_63_E05_A002 5', mRNA sequence
Length = 856
Score = 133 bits (284), Expect = 3e-030
Identities = 57/136 (41%), Positives = 82/136 (60%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
++VS+AA N G+S VF+ YR + ALL P A LE+++ PP++F L ++ F AL G
Sbjct: 184 YVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFLKLFFYALLGN 363
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
T + Y + L + S T ASA N+VP +TF +A +LRLE V L G+AK G + +
Sbjct: 364 TLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGMAKAAGVALCL 543
Query: 559 GGATVITLYKGPAAAP 606
G I LY GP+ +P
Sbjct: 544 AGVLTIALYTGPSMSP 591
>gb|CX608969.1|CX608969 ANR1_9_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_G12_A002 5', mRNA sequence
Length = 699
Score = 133 bits (284), Expect = 3e-030
Identities = 57/136 (41%), Positives = 82/136 (60%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
++VS+AA N G+S VF+ YR + ALL P A LE+++ PP++F L ++ F AL G
Sbjct: 116 YVVSKAAFNHGMSTYVFIFYRQAAATALLLPLAIVLERRNAPPMSFRLFLKLFFYALLGN 295
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
T + Y + L + S T ASA N+VP +TF +A +LRLE V L G+AK G + +
Sbjct: 296 TLSMNLYNISLKYTSATVASATSNSVPVVTFFLAVLLRLEVVRLRSPSGMAKAAGVALCL 475
Query: 559 GGATVITLYKGPAAAP 606
G I LY GP+ +P
Sbjct: 476 AGVLTIALYTGPSMSP 523
>gb|CN126690.1|CN126690 RHOH1_18_D05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_D05_A002 5', mRNA sequence
Length = 881
Score = 132 bits (283), Expect = 5e-030
Identities = 58/132 (43%), Positives = 84/132 (63%)
Frame = +1 / +3
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
IV++AA + G+S VF+ YR+L + L P A+ LE+K PPL+F + ++ F AL GI
Sbjct: 177 IVTKAAFDEGMSTSVFVFYRHLTGILFLVPIAFVLERKTAPPLSFKVSLKLFFHALYGIA 356
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
Y LGL + S T +SAI N +PA+ F +A +LR+E ++L R HG+AK G + SI
Sbjct: 357 GAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLLRMETLNLKRFHGIAKASGVLFSIA 536
Query: 562 GATVITLYKGPA 597
G V+ Y+GPA
Sbjct: 537 GVIVLAFYQGPA 572
>gb|CX614824.1|CX614824 GABR1_16_C08.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_C08_A002 5', mRNA sequence
Length = 815
Score = 132 bits (283), Expect = 5e-030
Identities = 58/132 (43%), Positives = 84/132 (63%)
Frame = +1 / +1
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
IV++AA + G+S VF+ YR+L + L P A+ LE+K PPL+F + ++ F AL GI
Sbjct: 178 IVTKAAFDEGMSTSVFVFYRHLTGILFLVPIAFVLERKTAPPLSFKVSLKLFFHALYGIA 357
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
Y LGL + S T +SAI N +PA+ F +A +LR+E ++L R HG+AK G + SI
Sbjct: 358 GAINIYGLGLSYSSATSSSAIFNLLPAVAFFLAVLLRMETLNLKRFHGIAKASGVLFSIA 537
Query: 562 GATVITLYKGPA 597
G V+ Y+GPA
Sbjct: 538 GVIVLAFYQGPA 573
>gb|CD219719.1|CD219719 CCC1_58_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_58_A06_A007 5', mRNA sequence
Length = 654
Score = 131 bits (281), Expect = 9e-030
Identities = 57/132 (43%), Positives = 86/132 (65%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
+IV+ A+L G+S V +V+RNL + A++APFA + E+K RP +T + ++ L L
Sbjct: 75 YIVAVASLKRGMSHFVLVVHRNLFATAVMAPFALWFERKSRPRMTIKIFLKIMGLTLLEP 254
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
+Q Y +G S +ASA+ N +PA+TFVMA VLR+E+V L H AK+VGTV+++
Sbjct: 255 VLDQNLYFMGANLTSAGFASALINILPAVTFVMALVLRMEKVRLRSVHSQAKIVGTVLTV 434
Query: 559 GGATVITLYKGP 594
GA ++ LY GP
Sbjct: 435 AGAVLMILYHGP 470
>gb|CL192647.1|CL192647 104_415_10940397_114_32258_085 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940397, DNA
sequence
Length = 637
Score = 56.5 bits (117), Expect(4) = 4e-028
Identities = 21/46 (45%), Positives = 33/46 (71%)
Frame = +1 / +3
Query: 358 LLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRL 495
L +C + NQ +LLGL + +PTYA+AIQ ++PA TF++A ++ L
Sbjct: 306 LCLVCSVFGNQLLFLLGLSYTNPTYAAAIQPSIPAFTFILALIMGL 443
Score = 51.9 bits (107), Expect(4) = 4e-028
Identities = 16/35 (45%), Positives = 31/35 (88%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYF 303
H++++ ALN+G++ +VF V+R+L++L++LAP A+F
Sbjct: 2 HVIAKQALNVGVNRVVFCVFRDLLALSVLAPLAFF 106
Score = 44.6 bits (91), Expect(4) = 4e-028
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +1 / +1
Query: 481 AVLRLEQVDLSRRHGLAKVVGTVVSIGGATVITLYKGPA 597
A R E V L G AK+ GTVV + GA ++ LYKGPA
Sbjct: 499 ACFRTETVSLVSNEGRAKIGGTVVCVLGAVLMVLYKGPA 615
Score = 27.6 bits (54), Expect(4) = 4e-028
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1 / +2
Query: 322 PPLTFSLLVEFFLLALCG 375
PPLT+ L+ FFLL L G
Sbjct: 140 PPLTWRLVGSFFLLGLTG 193
>gb|CN144477.1|CN144477 WOUND1_22_C10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_22_C10_A002 5', mRNA sequence
Length = 771
Score = 89.5 bits (189), Expect(2) = 5e-028
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = +1 / +1
Query: 319 RPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLE 498
R P+T LL F LL GI NQ +LLGL + + +YA+A Q +P TF++AA++ +E
Sbjct: 433 RRPVTPRLLASFALL*FTGIFGNQLLFLLGLSYTNASYAAAFQPAIPVFTFLLAAIVGVE 612
Query: 499 QVDLSRRHGLAKVVGTVVSIGGATVITLYKGPA 597
V++ + G+ KV+GT V + GA ++ Y+GP+
Sbjct: 613 VVNIFTKDGVVKVLGTAVCVFGAVLMVFYQGPS 711
Score = 56.1 bits (116), Expect(2) = 5e-028
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDR 321
H+++++ LN+G+++IVF VYR+L++LALLAP A+ E+ R
Sbjct: 307 HVLTKSVLNVGMNQIVFCVYRDLVALALLAPIAFLRERSVR 429
>gb|BM326163.1|BM326163 PIC1_66_E10.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 483
Score = 91.3 bits (193), Expect(2) = 5e-028
Identities = 38/93 (40%), Positives = 60/93 (64%)
Frame = +1 / +2
Query: 319 RPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLE 498
R P+T LL F LL GI NQ +LLGL + + +YA+A Q +P TF++AA++ +E
Sbjct: 197 RRPVTPRLLASFALLGFTGIFGNQLLFLLGLSYTNASYAAAFQPAIPVFTFLLAAIVGVE 376
Query: 499 QVDLSRRHGLAKVVGTVVSIGGATVITLYKGPA 597
V++ + G+ KV+GT V + GA ++ Y+GP+
Sbjct: 377 VVNIFTKDGVVKVLGTAVCVFGAVLMVFYQGPS 475
Score = 54.2 bits (112), Expect(2) = 5e-028
Identities = 19/37 (51%), Positives = 32/37 (86%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLE 309
H+++++ LN+G+++IVF VYR+L++LALLAP A+ E
Sbjct: 74 HVLTKSVLNVGMNQIVFCVYRDLVALALLAPIAFLRE 184
>gb|CX609975.1|CX609975 ANR1_15_H05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_15_H05_A002 5', mRNA sequence
Length = 798
Score = 116 bits (248), Expect = 3e-025
Identities = 45/132 (34%), Positives = 80/132 (60%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H++S+ AL+ G++ +VF+ YR+ + +L P + LE++ P+T + + F+ AL G+
Sbjct: 394 HVMSKVALDQGMNPLVFLFYRHTTAALVLIPVTFVLERRKAKPVTLKIGWKMFIHALYGV 573
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSI 558
TA + LGL + S T +SA+ N P +TF++A + +E + L+R HG K G + +
Sbjct: 574 TACGDLFNLGLNYASATSSSALYNVQPVVTFILAVIFGMETLKLTRFHGKVKFAGILFCV 753
Query: 559 GGATVITLYKGP 594
G T++ Y+GP
Sbjct: 754 AGVTILAFYQGP 789
>gb|CD227487.1|CD227487 CCC1_51_F01.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_F01_A007 5', mRNA sequence
Length = 652
Score = 115 bits (245), Expect = 8e-025
Identities = 55/135 (40%), Positives = 77/135 (57%)
Frame = +1 / +1
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
+VS+AA N G++ VF+ YR + LL P A LE+K+ L+ LL++ F LAL GIT
Sbjct: 205 VVSKAAFNHGMNTYVFIFYRQAAASLLLLPIALVLERKNVTTLSPWLLLKLFFLALIGIT 384
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+ Y + L S T ASA N +P +TF A +L++E V L GLAK+ G + +
Sbjct: 385 FSLNLYNVSLKFTSATVASAATNAMPVVTFCFALLLKMEAVKLRSSSGLAKLAGVSLCLA 564
Query: 562 GATVITLYKGPAAAP 606
G I Y GPA +P
Sbjct: 565 GVFTIAFYVGPALSP 609
>gb|CX606918.1|CX606918 ANR1_5_E02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_5_E02_A002 5', mRNA sequence
Length = 771
Score = 115 bits (245), Expect = 8e-025
Identities = 52/135 (38%), Positives = 77/135 (57%)
Frame = +1 / +3
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
I+S+AA + G+S VF+ YR + L P A L ++ PPL+F LL + FL AL G T
Sbjct: 99 ILSKAAFDRGLSTFVFVFYRLAAASLFLLPLAILLARRSAPPLSFRLLAKMFLYALAGNT 278
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+ + L + S T ASA+ N++P ITF +A ++R+E ++L R G K G +
Sbjct: 279 LSLNLANVSLKYTSTTVASAMCNSIPVITFFLALLMRMEVINLKRPSGKGKAAGITFCLA 458
Query: 562 GATVITLYKGPAAAP 606
G VI LY G + +P
Sbjct: 459 GVLVIALYAGSSLSP 503
>gb|CX622584.1|CX622584 GABR1_64_G04.g2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G04_A002 5', mRNA sequence
Length = 803
Score = 115 bits (245), Expect = 8e-025
Identities = 52/135 (38%), Positives = 77/135 (57%)
Frame = +1 / +2
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
I+S+AA + G+S VF+ YR + L P A L ++ PPL+F LL + FL AL G T
Sbjct: 98 ILSKAAFDRGLSTFVFVFYRLAAASLFLLPLAILLARRSAPPLSFRLLAKMFLYALAGNT 277
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+ + L + S T ASA+ N++P ITF +A ++R+E ++L R G K G +
Sbjct: 278 LSLNLANVSLKYTSTTVASAMCNSIPVITFFLALLMRMEVINLKRPSGKGKAAGITFCLA 457
Query: 562 GATVITLYKGPAAAP 606
G VI LY G + +P
Sbjct: 458 GVLVIALYAGSSLSP 502
>gb|CD427874.1|CD427874 ETH1_34_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_34_H06_A002 5', mRNA sequence
Length = 555
Score = 92.7 bits (196), Expect(2) = 9e-025
Identities = 37/97 (38%), Positives = 57/97 (58%)
Frame = +1 / +2
Query: 304 LEKKDRPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAA 483
+ K+ PPLTF L V+ F G+ Y +GL + S T +SAI N VP + F++A
Sbjct: 212 IRKRPAPPLTFRLSVKIFAHGFYGMAGTINLYCIGLKYASATSSSAIFNIVPVVAFILAV 391
Query: 484 VLRLEQVDLSRRHGLAKVVGTVVSIGGATVITLYKGP 594
+ R+E ++L HG+AK G ++ + G V+ LY+GP
Sbjct: 392 MFRMETLELRSVHGMAKASGILLCVAGVVVLALYQGP 502
Score = 41.8 bits (85), Expect(2) = 9e-025
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPP 327
HI+++AA N G S VF+ YR+ ++ L PFA+ +K P
Sbjct: 104 HILTKAAFNEGTSTTVFVFYRHAVAAIFLLPFAFLEIRKRPAP 232
>gb|CD221601.1|CD221601 CCC1_55_G07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_55_G07_A007 5', mRNA sequence
Length = 649
Score = 114 bits (244), Expect = 1e-024
Identities = 55/135 (40%), Positives = 76/135 (56%)
Frame = +1 / +2
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
+VS+AA N G++ VF+ YR + LL P A LE+K+ L+ LL+ F LAL GIT
Sbjct: 200 VVSKAAFNHGMNTYVFIFYRQAAASLLLLPIALVLERKNVTTLSPWLLLRLFFLALIGIT 379
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
+ Y + L S T ASA N +P +TF A +L++E V L GLAK+ G + +
Sbjct: 380 FSLNLYNVSLKFTSATVASAATNAMPVVTFCFALLLKMEAVKLRSSSGLAKLAGVSLCLA 559
Query: 562 GATVITLYKGPAAAP 606
G I Y GPA +P
Sbjct: 560 GVFTIAFYVGPALSP 604
>gb|CX608576.1|CX608576 ANR1_39_A01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_A01_A002 5', mRNA sequence
Length = 792
Score = 114 bits (244), Expect = 1e-024
Identities = 48/129 (37%), Positives = 75/129 (58%)
Frame = +1 / +3
Query: 211 RAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGITANQ 390
+ A+N G++ +V + + L + LAP A+F E+K RP LT + F+ A G Q
Sbjct: 144 KVAMNGGMNPLVIVTLQQLTAAVFLAPIAFFKERKSRPKLTLEIFAYIFVSAALGAALRQ 323
Query: 391 GFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIGGAT 570
+ L + + T+ +A N P +TF++A R +DL R G+AK++GT+VS+ GA
Sbjct: 324 YMIFVALRYTTATFVTAFSNIAPVLTFLLAVATRSGALDLKSRTGMAKLLGTLVSLAGAM 503
Query: 571 VITLYKGPA 597
V+TLYKG A
Sbjct: 504 VLTLYKGVA 530
>gb|CD220370.1|CD220370 CCC1_66_B03.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_B03_A007 5', mRNA sequence
Length = 665
Score = 77.6 bits (163), Expect(2) = 2e-024
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = +1 / +3
Query: 319 RPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLE 498
R P+T LL F LL GI NQ +LLGL + + +YA+A Q +P TF++AA++ +E
Sbjct: 420 RRPVTPRLLASFALLGFTGIFGNQLLFLLGLSYTNASYAAAFQPAIPVFTFLLAAIVGVE 599
Query: 499 QVDLSRRHGLAKVVGTVVSIGG 564
V++ G+ KV+GT V + G
Sbjct: 600 VVNIFXEDGVVKVLGTAVCVFG 665
Score = 56.1 bits (116), Expect(2) = 2e-024
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDR 321
H+++++ LN+G+++IVF VYR+L++LALLAP A+ E+ R
Sbjct: 294 HVLTKSVLNVGMNQIVFCVYRDLVALALLAPIAFLRERSVR 416
>gb|CW317913.1|CW317913 104_809_11473667_148_35865_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473667, DNA
sequence
Length = 532
Score = 113 bits (242), Expect = 2e-024
Identities = 49/70 (70%), Positives = 58/70 (82%)
Frame = +1 / -3
Query: 388 QGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIGGA 567
QGFYLLGL + SPT+ASAIQN+VPAIT MAA L +E+V L RR GLAKV GT++ + GA
Sbjct: 530 QGFYLLGLDNTSPTFASAIQNSVPAITLAMAAALGIERVRLRRRDGLAKVAGTMLCVAGA 351
Query: 568 TVITLYKGPA 597
TVITL+KGPA
Sbjct: 350 TVITLFKGPA 321
>gb|CD423198.1|CD423198 SA1_27_D12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_27_D12_A002 5', mRNA sequence
Length = 682
Score = 91.3 bits (193), Expect(2) = 2e-024
Identities = 37/97 (38%), Positives = 56/97 (57%)
Frame = +1 / +3
Query: 304 LEKKDRPPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAA 483
+ K+ PPLTF L V+ F G+ Y +GL + S T +SAI N VP + F++A
Sbjct: 231 IRKRPAPPLTFRLSVKIFAHGFYGMAGTINLYCIGLKYASATSSSAIFNIVPVVAFILAV 410
Query: 484 VLRLEQVDLSRRHGLAKVVGTVVSIGGATVITLYKGP 594
+ R+E + L HG+AK G ++ + G V+ LY+GP
Sbjct: 411 MFRMETLKLRSVHGMAKASGILLCVAGVVVLALYQGP 521
Score = 41.8 bits (85), Expect(2) = 2e-024
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1 / +3
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPP 327
HI+++AA N G S VF+ YR+ ++ L PFA+ +K P
Sbjct: 123 HILTKAAFNEGTSTTVFVFYRHAVAAIFLLPFAFLEIRKRPAP 251
>gb|AW923084.1|AW923084 DG1_50_B12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 111 bits (237), Expect = 1e-023
Identities = 44/60 (73%), Positives = 53/60 (88%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+VSR ALNMGIS++VF VYRN+I+L LL PFAYFLEKKDRP LT + +++FFLLALCGI
Sbjct: 262 HVVSRLALNMGISKLVFPVYRNIIALCLLVPFAYFLEKKDRPQLTLNFVIQFFLLALCGI 441
>gb|DN551920.1|DN551920 pSPR-RT-MR-H2_E06_C288 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 1473
Score = 110 bits (235), Expect = 2e-023
Identities = 46/92 (50%), Positives = 64/92 (69%)
Frame = +1 / -1
Query: 322 PPLTFSLLVEFFLLALCGITANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQ 501
PPLT+ L+ FFLL L G+ NQ +LLGL + +PTYA+AIQ ++PA TF++A ++ E
Sbjct: 1473 PPLTWRLVGSFFLLGLTGVFGNQLLFLLGLSYTNPTYAAAIQPSIPAFTFILALIMGTET 1294
Query: 502 VDLSRRHGLAKVVGTVVSIGGATVITLYKGPA 597
V L G AK+ GTVV + GA ++ LY+GPA
Sbjct: 1293 VSLVSNEGRAKIGGTVVCVLGAVLMVLYRGPA 1198
>gb|BE361431.1|BE361431 DG1_72_B08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 108 bits (230), Expect = 9e-023
Identities = 44/123 (35%), Positives = 70/123 (56%)
Frame = +1 / +3
Query: 211 RAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGITANQ 390
+ AL G+ +V + R L++ LAP AYF E+ RP LT +LV F A G +Q
Sbjct: 144 KKALQEGLDRLVLITLRQLVATVFLAPIAYFRERNTRPKLTLEILVYLFFSAAFGAALSQ 323
Query: 391 GFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIGGAT 570
+ GL + + T+A N P +TF++A +LR+E +++ + G AK+VGT+ S G
Sbjct: 324 YTFFYGLQYTTATFAITFTNVAPVLTFLIAVLLRVESLNMKNKAGAAKIVGTLTSFAGVM 503
Query: 571 VIT 579
++T
Sbjct: 504 LLT 512
>gb|CD223023.1|CD223023 CCC1_25_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_25_A06_A007 5', mRNA sequence
Length = 662
Score = 106 bits (226), Expect = 3e-022
Identities = 39/97 (40%), Positives = 71/97 (73%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+++++ LN+G++++VF VYR+L++ A+LAP A+ E++ RPP+T LL F LL G+
Sbjct: 185 HVLTKSVLNVGMNQVVFCVYRDLLAFAVLAPVAFLRERRVRPPVTPQLLASFALLGFTGL 364
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVL 489
N +L+GL + + +YA+A Q ++P +TF++AA++
Sbjct: 365 YGNPLLFLVGLRYTNASYAAAFQPSIPVLTFLLAAIV 475
>gb|CD425326.1|CD425326 SA1_11_E05.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_11_E05_A002 5', mRNA sequence
Length = 637
Score = 106 bits (226), Expect = 3e-022
Identities = 39/97 (40%), Positives = 71/97 (73%)
Frame = +1 / +2
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+++++ LN+G++++VF VYR+L++ A+LAP A+ E++ RPP+T LL F LL G+
Sbjct: 170 HVLTKSVLNVGMNQVVFCVYRDLLAFAVLAPVAFLRERRVRPPVTPQLLASFALLGFTGL 349
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVL 489
N +L+GL + + +YA+A Q ++P +TF++AA++
Sbjct: 350 YGNPLLFLVGLRYTNASYAAAFQPSIPVLTFLLAAIV 460
>gb|CD428066.1|CD428066 ETH1_32_H06.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_H06_A002 5', mRNA sequence
Length = 658
Score = 106 bits (226), Expect = 3e-022
Identities = 39/97 (40%), Positives = 71/97 (73%)
Frame = +1 / +1
Query: 199 HIVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGI 378
H+++++ LN+G++++VF VYR+L++ A+LAP A+ E++ RPP+T LL F LL G+
Sbjct: 193 HVLTKSVLNVGMNQVVFCVYRDLLAFAVLAPVAFLRERRVRPPVTPQLLASFALLGFTGL 372
Query: 379 TANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVL 489
N +L+GL + + +YA+A Q ++P +TF++AA++
Sbjct: 373 YGNPLLFLVGLRYTNASYAAAFQPSIPVLTFLLAAIV 483
>gb|CF434025.1|CF434025 NIT1_31_F11.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_31_F11_A002 5', mRNA sequence
Length = 674
Score = 104 bits (221), Expect = 2e-021
Identities = 47/135 (34%), Positives = 70/135 (51%)
Frame = +1 / +3
Query: 202 IVSRAALNMGISEIVFMVYRNLISLALLAPFAYFLEKKDRPPLTFSLLVEFFLLALCGIT 381
++S+AA N GI+ +F YR + LL P A +P ++ L++ F L GIT
Sbjct: 144 VISKAAFNQGINTYIFFFYRQALGSVLLLPIALLQRINAQPIISTRGLIKIFFCTLIGIT 323
Query: 382 ANQGFYLLGLYHLSPTYASAIQNTVPAITFVMAAVLRLEQVDLSRRHGLAKVVGTVVSIG 561
Y + L S T ASA +++PAI F MA +LR+E V G+AKV G + +
Sbjct: 324 LGVNLYNVSLKFTSATVASAADSSIPAIIFFMAVLLRMEDVKPRSSSGIAKVTGIALCLA 503
Query: 562 GATVITLYKGPAAAP 606
G I + GP+ +P
Sbjct: 504 GVFTIAFFTGPSISP 548
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 676,009,469
Number of Sequences: 832831
Number of extensions: 8890403
Number of successful extensions: 182129
Number of sequences better than 1.0e-020: 54
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 18425563002
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)