TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN21e06.xg.2.1
(704 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle... 346 4e-096
gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Me... 288 2e-086
gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedl... 299 2e-080
gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stresse... 238 5e-062
gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Me... 236 3e-061
gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots ... 198 8e-061
gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1... 198 8e-061
gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stres... 201 8e-051
gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 ... 198 1e-049
gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Me... 194 9e-049
gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Me... 170 3e-041
gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2... 170 3e-041
gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Me... 160 1e-038
gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated ... 141 9e-033
gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Me... 90 6e-032
gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorgh... 120 3e-026
gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Me... 109 4e-023
gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adap... 79 1e-022
>gb|BI351515.1|BI351515 IP1_72_G08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 346 bits (750), Expect(2) = 4e-096
Identities = 140/154 (90%), Positives = 145/154 (94%)
Frame = +3 / +1
Query: 153 DHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLM 332
DHQDAVLCCSFKEKPVFTFGNQMG+DMLETTL+ALQDLTLDKI D PGRKALHAEVPKLM
Sbjct: 1 DHQDAVLCCSFKEKPVFTFGNQMGIDMLETTLIALQDLTLDKIFDLPGRKALHAEVPKLM 180
Query: 333 EQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*CDPSAPRKL 512
EQGYAYLPAGVCLSGMGRHVSYE+AVAWKVLGEDGNVHCLAFCFVNWSFV*C+ A KL
Sbjct: 181 EQGYAYLPAGVCLSGMGRHVSYEEAVAWKVLGEDGNVHCLAFCFVNWSFV*CNLGALCKL 360
Query: 513 YDQRPFLHSL*TRMVRCCCYC*LGNGMFR*SWGK 614
YD+ PFLHSL*TRMVRCCCYC*LGN MFR*S GK
Sbjct: 361 YDRHPFLHSL*TRMVRCCCYC*LGNTMFR*SLGK 462
Score = 304 bits (658), Expect = 1e-081
Identities = 130/152 (85%), Positives = 137/152 (90%)
Frame = -2 / -3
Query: 613 FPQDYLNMPLPS*Q*QQHRTILVYRECKNGR*S*SFRGALGSHQTKDQLTKQKARQCTLP 434
FP+DYLN+ LPS*Q*QQHRTILVYRECKNG S*S A HQTKDQLTKQKARQCTLP
Sbjct: 461 FPKDYLNIVLPS*Q*QQHRTILVYRECKNGCRS*SLHRAPRLHQTKDQLTKQKARQCTLP 282
Query: 433 SSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACSAFLPGSSEILSRVRSCR 254
SSPRTF ATA S*ETWRPIPD+HTPAG+YA PCSISFGTSAC+AFLPG S+ILSRVRSCR
Sbjct: 281 SSPRTFHATASS*ETWRPIPDKHTPAGKYAYPCSISFGTSACNAFLPGRSKILSRVRSCR 102
Query: 253 ATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS* 158
A +VVSNMS PIWLPKVNTGFSLKEQHKTAS*
Sbjct: 101 AIRVVSNMSIPIWLPKVNTGFSLKEQHKTAS* 6
Score = 274 bits (593), Expect = 9e-073
Identities = 119/151 (78%), Positives = 134/151 (88%)
Frame = -1 / -2
Query: 605 RLPEHAVA*LTVAATPHHSRLQRMQKWTLIVKFPRCTWITSDEGPVDETEGEAVHVAVLT 426
RLPEH V *LTV ATP+HSRLQRMQKW IVKF + I S+EGPVDETEGEAV+VA+ T
Sbjct: 453 RLPEHRVT*LTVTATPYHSRLQRMQKWMPIVKFAQGA*IASNEGPVDETEGEAVYVAIFT 274
Query: 425 ENFPSNSLLVGDMAAHPRQAHPSRQVRIALFHQFRNLRM*CLSTRLVRDLVKGEILQSD* 246
ENFP NS L+GDMAAHPRQA+PSRQVRI+LFHQFRNLR+*CLS R V++LV+GEIL S+*
Sbjct: 273 ENFPRNSFLIGDMAAHPRQAYPSRQVRISLFHQFRNLRV*CLSARQVKNLVQGEIL*SN* 94
Query: 245 SRF*HVNSHLVAESKHRLFLERAAQDSVLMV 153
S F*HVNSHLVA+SKHRLFLERAAQDSVLM+
Sbjct: 93 SCF*HVNSHLVAKSKHRLFLERAAQDSVLMI 1
Score = 263 bits (568), Expect = 3e-069
Identities = 116/156 (74%), Positives = 127/156 (81%)
Frame = +2 / +3
Query: 158 SRRCLVLLFQGKACVYFRQPDGS*HVRNDFSRSARSHP*QDL*RAW*KGTTCGGSETDGT 337
S RCLVLLFQGKACVYF QPDG+*HVRN+ + S RSHP QD * AW KG T GGSETDGT
Sbjct: 6 SGRCLVLLFQGKACVYFWQPDGN*HVRNNSNCSTRSHPGQDF*PAWQKGITRGGSETDGT 185
Query: 338 GLCVPAGWGVPVWDGPPCLLRASCCLESSR*GRQRALPRLLFRQLVLRLM*SKCTAETLR 517
G+CV AGWG+ VWDGPPCLL SCC+ESSR* QR LPRLLFRQLVLRLM S+ +TLR
Sbjct: 186 GICVLAGWGMLVWDGPPCLL*GSCCVESSR*RWQRTLPRLLFRQLVLRLMQSRRPVQTLR 365
Query: 518 SASIFAFSVDENGAVLLLLLARQRHVQVVLGKASIV 625
SASIFAFSVDENG VLLLLLAR VQVV G+ ++
Sbjct: 366 SASIFAFSVDENGTVLLLLLAR*HDVQVVFGEKPVL 473
Score = 221 bits (477), Expect = 9e-057
Identities = 96/133 (72%), Positives = 100/133 (75%)
Frame = +1 / +2
Query: 157 IKTLSCAALSRKSLCLLSATRWELTC*KRL*SLCKISPLTRSLTSLVERHYMRRFRN*WN 336
I+TLSCAALSRKSLCLL ATRWELTC*K+L* L KISP TR LT L ERHY RRFRN*WN
Sbjct: 5 IRTLSCAALSRKSLCLLLATRWELTC*KQL*LLYKISPWTRFLTCLAERHYTRRFRN*WN 184
Query: 337 RAMRTCRLGCACLGWAAMSPTSKLLLGKFSVRTATCTAXXXXXXXXXXXDVIQVHRGNFT 516
R MRTCRLG ACLGWAAMSP KLL GKFSV+ AT TA D I NFT
Sbjct: 185 RDMRTCRLGYACLGWAAMSPMRKLLRGKFSVKMATYTASPSVSSTGPSFDAI*APCANFT 364
Query: 517 ISVHFCILCRREW 555
I +HFCILCRREW
Sbjct: 365 IGIHFCILCRREW 403
Score = 86.3 bits (182), Expect(4) = 6e-043
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -3 / -1
Query: 300 FYQARQRSCQG*DLAERLKSFLTCQLPSGCRK*TQAFP*KSSTRQRLD 157
F QA Q+SC G*DL E+L+ FLTCQ PSGC+K*TQAFP*KSSTRQR D
Sbjct: 148 FCQAGQKSCPG*DLVEQLELFLTCQFPSGCQK*TQAFP*KSSTRQRPD 5
Score = 68.9 bits (144), Expect(4) = 6e-043
Identities = 32/42 (76%), Positives = 33/42 (78%)
Frame = -3 / -1
Query: 609 PKTT*TCRCLANSSSNTAPFSSTENAKMDADRKVSAVHLDHI 484
PKTT*T LANS+SNT PFSSTENAKMDADRKV LD I
Sbjct: 457 PKTT*TSCYLANSNSNTVPFSSTENAKMDADRKVCTGRLDCI 332
Score = 56.1 bits (116), Expect(4) = 6e-043
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -3 / -1
Query: 429 HRELSKQQLARRRHGGPSQTGTPQPAGT 346
HRELS QQL RRHGGPSQT PQPA T
Sbjct: 277 HRELSTQQLPHRRHGGPSQTSIPQPAST 194
Score = 26.7 bits (52), Expect(2) = 4e-096
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 601 SLGESQYCEDVN 636
SLG+SQYC+DV+
Sbjct: 451 SLGKSQYCKDVS 486
Score = 21.7 bits (41), Expect(4) = 6e-043
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 630 IFTILAFPK 604
IFTILAFP+
Sbjct: 480 IFTILAFPQ 454
>gb|BF481484.1|BF481484 FM1_19_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 513
Score = 288 bits (623), Expect(3) = 2e-086
Identities = 116/126 (92%), Positives = 119/126 (94%)
Frame = +3 / +2
Query: 237 ETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAW 416
ETTL+ALQDLTLDKI DEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYE+AVAW
Sbjct: 2 ETTLIALQDLTLDKIFDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEEAVAW 181
Query: 417 KVLGEDGNVHCLAFCFVNWSFV*CDPSAPRKLYDQRPFLHSL*TRMVRCCCYC*LGNGMF 596
KVLGEDGNVHCLAFCFVNWSFV*C+ A KLYDQ PFLHSL*TRMVRCCCYC*LGN MF
Sbjct: 182 KVLGEDGNVHCLAFCFVNWSFV*CNLGALCKLYDQHPFLHSL*TRMVRCCCYC*LGNAMF 361
Query: 597 R*SWGK 614
R*SWGK
Sbjct: 362 R*SWGK 379
Score = 253 bits (546), Expect(3) = 1e-073
Identities = 108/126 (85%), Positives = 115/126 (91%)
Frame = -2 / -1
Query: 613 FPQDYLNMPLPS*Q*QQHRTILVYRECKNGR*S*SFRGALGSHQTKDQLTKQKARQCTLP 434
FPQDYLN+ LPS*Q*QQHRTILVYRECKNG *S*S A HQTKDQLTKQKARQCTLP
Sbjct: 378 FPQDYLNIALPS*Q*QQHRTILVYRECKNGC*S*SLHRAPRLHQTKDQLTKQKARQCTLP 199
Query: 433 SSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACSAFLPGSSEILSRVRSCR 254
SSPRTF ATA S*ETWRPIPD+HTPAG+YA*PCSI+FGTSAC+AFLPGSS+ILSRVRSCR
Sbjct: 198 SSPRTFHATASS*ETWRPIPDKHTPAGKYA*PCSINFGTSACNAFLPGSSKILSRVRSCR 19
Query: 253 ATKVVS 236
A +VVS
Sbjct: 18 AIRVVS 1
Score = 227 bits (491), Expect(2) = 2e-065
Identities = 98/125 (78%), Positives = 110/125 (88%)
Frame = -1 / -3
Query: 611 SPRLPEHAVA*LTVAATPHHSRLQRMQKWTLIVKFPRCTWITSDEGPVDETEGEAVHVAV 432
SPRLPEH V *LTV ATP+HSRLQRMQKW LIVKF + I S+EGPVDETEGEAV+VA+
Sbjct: 376 SPRLPEHRVT*LTVTATPYHSRLQRMQKWMLIVKFAQGA*IASNEGPVDETEGEAVYVAI 197
Query: 431 LTENFPSNSLLVGDMAAHPRQAHPSRQVRIALFHQFRNLRM*CLSTRLVRDLVKGEILQS 252
TENFP NS L+GDMAAHPRQA+PSRQVRIALFHQFRNLR+*CLS RLV++LV+GEIL S
Sbjct: 196 FTENFPRNSFLIGDMAAHPRQAYPSRQVRIALFHQFRNLRV*CLSARLVKNLVQGEIL*S 17
Query: 251 D*SRF 237
+*S F
Sbjct: 16 N*SCF 2
Score = 216 bits (467), Expect(2) = 9e-062
Identities = 98/131 (74%), Positives = 105/131 (80%)
Frame = +2 / +1
Query: 236 RNDFSRSARSHP*QDL*RAW*KGTTCGGSETDGTGLCVPAGWGVPVWDGPPCLLRASCCL 415
RN+ + S RSHP QD *RAW KG T GGSE DGTGLCV AGWG+ VWDGPPCLL SCC+
Sbjct: 1 RNNSNCSTRSHPGQDF*RAWQKGITRGGSEIDGTGLCVLAGWGMLVWDGPPCLL*GSCCV 180
Query: 416 ESSR*GRQRALPRLLFRQLVLRLM*SKCTAETLRSASIFAFSVDENGAVLLLLLARQRHV 595
ESSR* QR LPRLLFRQLVLRLM S+ +TLRSASIFAFSVDENG VLLLLLAR R V
Sbjct: 181 ESSR*RWQRTLPRLLFRQLVLRLMQSRRPVQTLRSASIFAFSVDENGTVLLLLLAR*RDV 360
Query: 596 QVVLGKASIVK 628
QVVLGK+ K
Sbjct: 361 QVVLGKSQYCK 393
Score = 172 bits (371), Expect = 4e-042
Identities = 78/125 (62%), Positives = 81/125 (64%)
Frame = +1 / +3
Query: 238 KRL*SLCKISPLTRSLTSLVERHYMRRFRN*WNRAMRTCRLGCACLGWAAMSPTSKLLLG 417
K+L* L KISP TR LTSL ERHY RRFRN*WNRAMRTCRLG ACLGWAAMSP KLL G
Sbjct: 3 KQL*LLYKISPWTRFLTSLAERHYTRRFRN*WNRAMRTCRLGYACLGWAAMSPMRKLLRG 182
Query: 418 KFSVRTATCTAXXXXXXXXXXXDVIQVHRGNFTISVHFCILCRREWXXXXXXXXXXXXXX 597
KFSV+ AT TA D I NFTIS+HFCILCRREW
Sbjct: 183 KFSVKMATYTASPSVSSTGPSFDAI*APCANFTISIHFCILCRREWYGVAVTVS*VTRCS 362
Query: 598 XSLGE 612
SLGE
Sbjct: 363 GSLGE 377
Score = 75.3 bits (158), Expect(4) = 2e-035
Identities = 34/43 (79%), Positives = 35/43 (81%)
Frame = -3 / -2
Query: 612 FPKTT*TCRCLANSSSNTAPFSSTENAKMDADRKVSAVHLDHI 484
FPKTT*T R LANS+SNT PFSSTENAKMDADRKV LD I
Sbjct: 377 FPKTT*TSRYLANSNSNTVPFSSTENAKMDADRKVCTGRLDCI 249
Score = 56.1 bits (116), Expect(4) = 2e-035
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = -3 / -2
Query: 429 HRELSKQQLARRRHGGPSQTGTPQPAGT 346
HRELS QQL RRHGGPSQT PQPA T
Sbjct: 194 HRELSTQQLPHRRHGGPSQTSIPQPAST 111
Score = 46.9 bits (96), Expect(3) = 2e-086
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +3 / +2
Query: 630 CKFAPVSANLTI*TCCCLLRPGAL 701
CKFA VSANLT *TCCCL R GAL
Sbjct: 407 CKFALVSANLTR*TCCCL*RQGAL 478
Score = 44.1 bits (90), Expect(3) = 1e-073
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3 / -2
Query: 702 RVPLALTNNSKFRWLN*RKRAQIY 631
RVPLA TN+SKF LN*+KRAQIY
Sbjct: 479 RVPLAFTNSSKFSGLN*QKRAQIY 408
Score = 43.2 bits (88), Expect(2) = 2e-065
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -2 / -1
Query: 700 SAPGLNKQQQVQMVKLAETGANLHLHN 620
SAP L+KQQQVQ VKLAET ANL N
Sbjct: 477 SAPCLHKQQQVQRVKLAETSANLQGRN 397
Score = 41.8 bits (85), Expect(2) = 9e-062
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 631 VNLRPFPLI*PSELAVVC*GQGHS 702
VNLR F LI*P+ELA VC G+GHS
Sbjct: 408 VNLRSFLLI*PAELAAVCEGKGHS 479
Score = 40.5 bits (82), Expect(4) = 2e-035
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -3
Query: 701 ECPWP*QTTASSDG*ISGNGRKFTSSQY 618
ECP P QT ASS G*IS N RKFT ++
Sbjct: 478 ECPLPSQTAASSAG*ISRNERKFTRQKH 395
Score = 34.5 bits (69), Expect(4) = 2e-035
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3 / -2
Query: 300 FYQARQRSCQG*DLAERLKSF 238
F QARQ+SC G*DL E+L+ F
Sbjct: 65 FCQARQKSCPG*DLVEQLELF 3
Score = 24.9 bits (48), Expect(3) = 2e-086
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 604 LGESQYCEDVN 636
LG+SQYC+DV+
Sbjct: 370 LGKSQYCKDVS 402
Score = 21.7 bits (41), Expect(3) = 1e-073
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 630 IFTILAFPK 604
IFTILAFP+
Sbjct: 396 IFTILAFPQ 370
>gb|CD204626.1|CD204626 HS1_9_B12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_9_B12_A012 3', mRNA sequence
Length = 654
Score = 299 bits (648), Expect = 2e-080
Identities = 115/151 (76%), Positives = 134/151 (88%)
Frame = +3 / +1
Query: 42 EAATLVRWICQSYRYHLGADLVSHSDQAGESLLTMFWDHQDAVLCCSFKEKPVFTFGNQM 221
EAATL RW+CQSY YHLG +L++ SD+AGE+LL M W H DAVLCCSFKEKP+FTF N+
Sbjct: 1 EAATLARWVCQSYHYHLGLELLNQSDEAGEALLKMLWHHPDAVLCCSFKEKPMFTFANKA 180
Query: 222 GVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYE 401
G+DMLET+L+ALQDLTLDKI DE GRKA+ +++ KLMEQGYAYLP+GVC+SGMGRHVS++
Sbjct: 181 GLDMLETSLIALQDLTLDKIFDESGRKAIFSDISKLMEQGYAYLPSGVCMSGMGRHVSFD 360
Query: 402 QAVAWKVLGEDGNVHCLAFCFVNWSFV*CDP 494
QAVAWKVLGED NVHCLAFCFVNWSFV* P
Sbjct: 361 QAVAWKVLGEDSNVHCLAFCFVNWSFV*PRP 453
Score = 202 bits (435), Expect = 6e-051
Identities = 97/150 (64%), Positives = 106/150 (70%)
Frame = -2 / -2
Query: 493 GSHQTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTS 314
G TKDQLTKQ ARQCTL SSP TF ATA S ETWRPIPD HTP GRYA*PCSISF S
Sbjct: 452 GRGHTKDQLTKQNARQCTLLSSPSTFHATAWSKETWRPIPDMHTPDGRYA*PCSISFEIS 273
Query: 313 ACSAFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS*WSQNIVKS 134
AFLP SS+ILS VRSC A + VSNMS+P VN GFSLKEQH+TAS Q+I +
Sbjct: 272 ENIAFLPDSSKILSSVRSCSAIRDVSNMSSPALFANVNIGFSLKEQHRTASG*CQSIFNN 93
Query: 133 DSPA*SEWLTKSAPK*YR*LWQIQRTSVAA 44
SPA S+ L+ S P+ *LWQ SVAA
Sbjct: 92 ASPASSD*LSNSKPRW***LWQTHLASVAA 3
Score = 142 bits (304), Expect = 7e-033
Identities = 71/148 (47%), Positives = 96/148 (64%)
Frame = -1 / -1
Query: 485 SDEGPVDETEGEAVHVAVLTENFPSNSLLVGDMAAHPRQAHPSRQVRIALFHQFRNLRM* 306
S EGPVDE E +AVHVAVLTE+ P +SL+ +MA H AH QV +ALFH F ++
Sbjct: 444 SHEGPVDEAECQAVHVAVLTEHLPRHSLVERNMATHS*HAHT*WQVCVALFH*F*DI*EY 265
Query: 305 CLSTRLVRDLVKGEILQSD*SRF*HVNSHLVAESKHRLFLERAAQDSVLMVPEHCQK*FP 126
C + LV +LV ++LQ + F*HV LV + KHR L+RAAQ+SV M+PEH Q+ F
Sbjct: 264 CFPS*LVENLV*CQVLQRNKRCF*HVKPCLVCKCKHRFLLKRAAQNSVWMMPEHFQQCFA 85
Query: 125 SLIRVADQIRPQVIPVALANPANKCSSF 42
S I + + ++ + LANP++KC SF
Sbjct: 84 SFI*LIK*FQT*MVMITLANPSSKCGSF 1
Score = 122 bits (262), Expect = 4e-027
Identities = 59/112 (52%), Positives = 71/112 (63%)
Frame = +1 / +2
Query: 115 RIKLGNHF*QCSGTIKTLSCAALSRKSLCLLSATRWELTC*KRL*SLCKISPLTRSLTSL 294
++KL H *+CSG I+TL CAAL R++LCL TR LTC*K L CK TR TS
Sbjct: 74 QMKLAKHC*KCSGIIQTLFCAALLRRNLCLHLQTRQGLTC*KHLLLRCKT*H*TRFSTSQ 253
Query: 295 VERHYMRRFRN*WNRAMRTCRLGCACLGWAAMSPTSKLLLGKFSVRTATCTA 450
+ Y + +N*WNRA TC CAC W AM ++KL G+ SVRTATCTA
Sbjct: 254 EGKQYSQISQN*WNRATHTCHQVCACQEWVAMFLSTKLWRGRCSVRTATCTA 409
Score = 119 bits (254), Expect = 5e-026
Identities = 64/147 (43%), Positives = 84/147 (57%)
Frame = +2 / +3
Query: 44 SCYTCSLDLPKLPVSLGGGFGQPLGSSWGITFDNVLGPSRRCLVLLFQGKACVYFRQPDG 223
SC+TC + LP+L + G + SW +N L SRRC VLLF G+ VY +
Sbjct: 3 SCHTC*MGLPELSLPSRFGIT*SIR*SWRSIVENALASSRRCSVLLF*GETYVYICKQGR 182
Query: 224 S*HVRNDFSRSARSHP*QDL*RAW*KGTTCGGSETDGTGLCVPAGWGVPVWDGPPCLLRA 403
+*HVRN +AR QD R + +T+GTGL +PA V V +G PC R
Sbjct: 183 A*HVRNISYCAARPDTRQDFRRVRKESNILRYLKTNGTGLRIPAIRCVHVRNGSPCFFRP 362
Query: 404 SCCLESSR*GRQRALPRLLFRQLVLRL 484
SC +E +R*G+QRALP +L RQLVLR+
Sbjct: 363 SCGVEGAR*GQQRALPGILLRQLVLRV 443
>gb|CF761496.1|CF761496 DSAF1_77_A06.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_77_A06_A011 5', mRNA sequence
Length = 503
Score = 238 bits (515), Expect = 5e-062
Identities = 92/117 (78%), Positives = 105/117 (89%)
Frame = +3 / +2
Query: 144 MFWDHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVP 323
M W H DAVLCCSFKEKP+FTF N+ G+DMLET+L+ALQDLTLDKI DE GRKA+ +++
Sbjct: 5 MLWHHPDAVLCCSFKEKPMFTFANKAGLDMLETSLIALQDLTLDKIFDESGRKAIFSDIS 184
Query: 324 KLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*CDP 494
KLMEQGYAYLP+GVC+SGMGRHVS++QAVAWKVLGED NVHCLAFCFVNWSFV* P
Sbjct: 185 KLMEQGYAYLPSGVCMSGMGRHVSFDQAVAWKVLGEDSNVHCLAFCFVNWSFV*PRP 355
Score = 179 bits (385), Expect = 5e-044
Identities = 82/117 (70%), Positives = 87/117 (74%)
Frame = -2 / -3
Query: 493 GSHQTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTS 314
G TKDQLTKQ ARQCTL SSP TF ATA S ETWRPIPD HTP GRYA*PCSISF S
Sbjct: 354 GRGHTKDQLTKQNARQCTLLSSPSTFHATAWSKETWRPIPDMHTPDGRYA*PCSISFEIS 175
Query: 313 ACSAFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS*WSQNI 143
AFLP SS+ILS VRSC A + VSNMS+P VN GFSLKEQH+TAS Q+I
Sbjct: 174 ENIAFLPDSSKILSSVRSCSAIRDVSNMSSPALFANVNIGFSLKEQHRTASG*CQSI 4
Score = 118 bits (252), Expect = 1e-025
Identities = 59/114 (51%), Positives = 76/114 (66%)
Frame = -1 / -2
Query: 485 SDEGPVDETEGEAVHVAVLTENFPSNSLLVGDMAAHPRQAHPSRQVRIALFHQFRNLRM* 306
S EGPVDE E +AVHVAVLTE+ P +SL+ +MA H AH QV +ALFH F ++
Sbjct: 346 SHEGPVDEAECQAVHVAVLTEHLPRHSLVERNMATHS*HAHT*WQVCVALFH*F*DI*EY 167
Query: 305 CLSTRLVRDLVKGEILQSD*SRF*HVNSHLVAESKHRLFLERAAQDSVLMVPEH 144
C + LV +LV ++LQ + F*HV LV + KHR L+RAAQ+SV M+PEH
Sbjct: 166 CFPS*LVENLV*CQVLQRNKRCF*HVKPCLVCKCKHRFLLKRAAQNSVWMMPEH 5
Score = 114 bits (244), Expect = 1e-024
Identities = 55/103 (53%), Positives = 65/103 (63%)
Frame = +1 / +3
Query: 142 QCSGTIKTLSCAALSRKSLCLLSATRWELTC*KRL*SLCKISPLTRSLTSLVERHYMRRF 321
+CSG I+TL CAAL R++LCL TR LTC*K L CK TR TS + Y +
Sbjct: 3 KCSGIIQTLFCAALLRRNLCLHLQTRQGLTC*KHLLLRCKT*H*TRFSTSQEGKQYSQIS 182
Query: 322 RN*WNRAMRTCRLGCACLGWAAMSPTSKLLLGKFSVRTATCTA 450
+N*WNRA TC CAC W AM ++KL G+ SVRTATCTA
Sbjct: 183 QN*WNRATHTCHQVCACQEWVAMFLSTKLWRGRCSVRTATCTA 311
Score = 101 bits (216), Expect = 9e-021
Identities = 54/115 (46%), Positives = 69/115 (60%)
Frame = +2 / +1
Query: 140 DNVLGPSRRCLVLLFQGKACVYFRQPDGS*HVRNDFSRSARSHP*QDL*RAW*KGTTCGG 319
+N L SRRC VLLF G+ VY + +*HVRN +AR QD R +
Sbjct: 1 ENALASSRRCSVLLF*GETYVYICKQGRA*HVRNISYCAARPDTRQDFRRVRKESNILRY 180
Query: 320 SETDGTGLCVPAGWGVPVWDGPPCLLRASCCLESSR*GRQRALPRLLFRQLVLRL 484
+T+GTGL +PA V V +G PC R SC +E +R*G+QRALP +L RQLVLR+
Sbjct: 181 LKTNGTGLRIPAIRCVHVRNGSPCFFRPSCGVEGAR*GQQRALPGILLRQLVLRV 345
>gb|BG051633.1|BG051633 FM1_59_B11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 567
Score = 236 bits (510), Expect = 3e-061
Identities = 92/145 (63%), Positives = 112/145 (77%)
Frame = +3 / +1
Query: 51 TLVRWICQSYRYHLGADLVSHSDQAGESLLTMFWDHQDAVLCCSFKEKPVFTFGNQMGVD 230
TL RWI +SYR+H GA+L+ Q ++ L W H D+++CCS K PVFTF NQ G+D
Sbjct: 4 TLARWIGRSYRFHTGAELLRTDTQCTDASLKALWQHSDSIMCCSLKAAPVFTFANQSGLD 183
Query: 231 MLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAV 410
MLETTL+ALQD++L+KI D+ GRKAL E PK+M+QG+AYLP GVC+S MGR VSYEQAV
Sbjct: 184 MLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMGRPVSYEQAV 363
Query: 411 AWKVLGEDGNVHCLAFCFVNWSFV* 485
AWKVL +D HCLAF FVNWSFV*
Sbjct: 364 AWKVLSDDDTPHCLAFMFVNWSFV* 438
Score = 149 bits (320), Expect = 4e-035
Identities = 68/107 (63%), Positives = 73/107 (68%)
Frame = -2 / -2
Query: 481 TKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACSA 302
TKDQ T KARQC + SS RTF ATACS*+T RPI D HTP GRYA PC I G S SA
Sbjct: 434 TKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSA 255
Query: 301 FLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS 161
FLP SS I SR S RA VVS+MS P WL KVNTG + +EQH S
Sbjct: 254 FLPSSSRIFSREMSWRAINVVSSMSRPDWLAKVNTGAAFREQHMIES 114
Score = 110 bits (235), Expect = 2e-023
Identities = 58/144 (40%), Positives = 81/144 (56%)
Frame = -1 / -1
Query: 485 SDEGPVDETEGEAVHVAVLTENFPSNSLLVGDMAAHPRQAHPSRQVRIALFHQFRNLRM* 306
S EGPV E EGEAV V+ ++ P + LLVG H R H + +VR AL H R L
Sbjct: 438 SHEGPVHEHEGEAVRGVVVAQDLPRHRLLVGHRPPHTRYTHAAGKVREALLHNLRILGAE 259
Query: 305 CLSTRLVRDLVKGEILQSD*SRF*HVNSHLVAESKHRLFLERAAQDSVLMVPEHCQK*FP 126
L +++DL+KG++L+SD R HV + LV E +HR L+ A D V ++P+ Q
Sbjct: 258 RLPAIIIKDLLKGDVLESDQRRLQHVEAGLVGEGEHRSSLQGTAHDRVRVLPQCFQGSIS 79
Query: 125 SLIRVADQIRPQVIPVALANPANK 54
+L A ++ V PVA A+P K
Sbjct: 78 ALGVCAKELGSCVKPVAPADPPCK 7
>gb|CX608982.1|CX608982 ANR1_10_A02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_10_A02_A002 3', mRNA sequence
Length = 833
Score = 198 bits (426), Expect(2) = 8e-061
Identities = 75/120 (62%), Positives = 94/120 (78%)
Frame = +3 / +3
Query: 129 ESLLTMFWDHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKAL 308
E +L W H A+LCCS K PVFTF NQ G+DMLETTLVALQD+TL+K+ D+ GRK L
Sbjct: 330 EGVLKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNL 509
Query: 309 HAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*C 488
AE+P +MEQG+ +P+G+C+SG+GR VSYE+A+AWKVL +D HC+ F FVNWSFV*C
Sbjct: 510 CAELPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV*C 689
Score = 117 bits (250), Expect(2) = 2e-029
Identities = 55/108 (50%), Positives = 65/108 (60%)
Frame = -2 / -2
Query: 487 HQTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSAC 308
H T DQLT K QC SS TF A+A S +T RP P+ H+P G + PCS+ G+SA
Sbjct: 688 HYTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAH 509
Query: 307 SAFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTA 164
FLP SS SRV S AT+VVS+MS P W VNTG + KEQ A
Sbjct: 508 RFFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIA 365
Score = 57.4 bits (119), Expect(2) = 8e-061
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3 / +3
Query: 36 SPEAATLVRWICQSYRYHLGADLVSHSDQAG 128
SPEA TL RWICQSYR+H GA+L+ D +G
Sbjct: 234 SPEATTLARWICQSYRFHFGAELIKSGDGSG 326
Score = 33.1 bits (66), Expect(2) = 2e-029
Identities = 18/30 (60%), Positives = 18/30 (60%)
Frame = -2 / -2
Query: 127 PA*SEWLTKSAPK*YR*LWQIQRTSVAASG 38
P S L SAPK* *LWQI SV ASG
Sbjct: 325 PLPSPDLISSAPK*NL*LWQIHLASVVASG 236
>gb|BE361697.1|BE361697 DG1_81_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 661
Score = 198 bits (426), Expect(2) = 8e-061
Identities = 75/120 (62%), Positives = 94/120 (78%)
Frame = +3 / +3
Query: 129 ESLLTMFWDHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKAL 308
E +L W H A+LCCS K PVFTF NQ G+DMLETTLVALQD+TL+K+ D+ GRK L
Sbjct: 126 EGVLKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNL 305
Query: 309 HAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*C 488
AE+P +MEQG+ +P+G+C+SG+GR VSYE+A+AWKVL +D HC+ F FVNWSFV*C
Sbjct: 306 CAELPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV*C 485
Score = 117 bits (250), Expect(2) = 2e-029
Identities = 55/108 (50%), Positives = 65/108 (60%)
Frame = -2 / -1
Query: 487 HQTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSAC 308
H T DQLT K QC SS TF A+A S +T RP P+ H+P G + PCS+ G+SA
Sbjct: 484 HYTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAH 305
Query: 307 SAFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTA 164
FLP SS SRV S AT+VVS+MS P W VNTG + KEQ A
Sbjct: 304 RFFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIA 161
Score = 57.4 bits (119), Expect(2) = 8e-061
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3 / +3
Query: 36 SPEAATLVRWICQSYRYHLGADLVSHSDQAG 128
SPEA TL RWICQSYR+H GA+L+ D +G
Sbjct: 30 SPEATTLARWICQSYRFHFGAELIKSGDGSG 122
Score = 33.1 bits (66), Expect(2) = 2e-029
Identities = 18/30 (60%), Positives = 18/30 (60%)
Frame = -2 / -1
Query: 127 PA*SEWLTKSAPK*YR*LWQIQRTSVAASG 38
P S L SAPK* *LWQI SV ASG
Sbjct: 121 PLPSPDLISSAPK*NL*LWQIHLASVVASG 32
>gb|CN139927.1|CN139927 OX1_33_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_33_B02_A002 3', mRNA sequence
Length = 694
Score = 201 bits (434), Expect = 8e-051
Identities = 81/151 (53%), Positives = 101/151 (66%)
Frame = +3 / +3
Query: 33 GSPEAATLVRWICQSYRYHLGADLVSHSDQAGESLLTMFWDHQDAVLCCSFKEKPVFTFG 212
GSPEA L WI +SYR H G ++ + +S L FW H DA+LCCS K F
Sbjct: 18 GSPEALALATWIGRSYRAHTGTEIRWSDTEGADSPLMPFWKHSDAILCCSLKPAFTLKFA 197
Query: 213 NQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHV 392
N G D+LETTLV +QDL L+ + D+ G+KAL A++ K+M+QG AYLP GVC S MGR
Sbjct: 198 NSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGRQA 377
Query: 393 SYEQAVAWKVLGEDGNVHCLAFCFVNWSFV* 485
SYEQAVAWKV+G+DG CLA VNW+F+*
Sbjct: 378 SYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 470
Score = 105 bits (225), Expect = 5e-022
Identities = 54/119 (45%), Positives = 65/119 (54%)
Frame = -2 / -1
Query: 484 QTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACS 305
Q K QLT AR PSSP TF ATACS + RP+ D HTP GRYA PC + + A
Sbjct: 469 QMKVQLTSMSARH*GAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANR 290
Query: 304 AFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS*WSQNIVKSDS 128
AF P SS S RS T+VVS MS P L ++ +EQ AS QN ++ +S
Sbjct: 289 AFWPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQSIASLCFQNGIRGES 113
>gb|BE363303.1|BE363303 WS1_61_A11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 666
Score = 198 bits (426), Expect = 1e-049
Identities = 75/120 (62%), Positives = 94/120 (78%)
Frame = +3 / +3
Query: 129 ESLLTMFWDHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKAL 308
E +L W H A+LCCS K PVFTF NQ G+DMLETTLVALQD+TL+K+ D+ GRK L
Sbjct: 27 EGVLKTLWHHASAILCCSLKALPVFTFANQSGLDMLETTLVALQDITLEKVFDDQGRKNL 206
Query: 309 HAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*C 488
AE+P +MEQG+ +P+G+C+SG+GR VSYE+A+AWKVL +D HC+ F FVNWSFV*C
Sbjct: 207 CAELPGIMEQGFTCIPSGLCVSGLGRPVSYEKALAWKVLDDDSGAHCICFMFVNWSFV*C 386
Score = 117 bits (250), Expect = 2e-025
Identities = 55/108 (50%), Positives = 65/108 (60%)
Frame = -2 / -3
Query: 487 HQTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSAC 308
H T DQLT K QC SS TF A+A S +T RP P+ H+P G + PCS+ G+SA
Sbjct: 385 HYTNDQLTNMKQMQCAPLSSSSTFHASAFSYDTGRPRPETHSPLGMHVNPCSMMPGSSAH 206
Query: 307 SAFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTA 164
FLP SS SRV S AT+VVS+MS P W VNTG + KEQ A
Sbjct: 205 RFFLPWSSNTFSRVMSWSATRVVSSMSRPDWFANVNTGKAFKEQQSIA 62
>gb|BF585867.1|BF585867 FM1_25_E03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 510
Score = 194 bits (419), Expect = 9e-049
Identities = 76/108 (70%), Positives = 90/108 (83%)
Frame = +3 / +2
Query: 162 DAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQG 341
D+++CCS K PVFTF NQ G+DMLETTL+ALQD++L+KI D+ GRKAL E PK+M+QG
Sbjct: 2 DSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQG 181
Query: 342 YAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV* 485
+AYLP GVC+S MGR VSYEQAVAWKVL +D HCLAF FVNWSFV*
Sbjct: 182 FAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 325
Score = 150 bits (322), Expect = 2e-035
Identities = 68/107 (63%), Positives = 73/107 (68%)
Frame = -2 / -1
Query: 481 TKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACSA 302
TKDQ T KARQC + SS RTF ATACS*+T RPI D HTP GRYA PC I G S SA
Sbjct: 321 TKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSA 142
Query: 301 FLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS 161
FLP SS I SR S RA VVS+MS P WL KVNTG + +EQH S
Sbjct: 141 FLPSSSRIFSREMSWRAINVVSSMSRPAWLAKVNTGAAFREQHMIES 1
>gb|BF587717.1|BF587717 FM1_39_G09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 490
Score = 170 bits (365), Expect = 3e-041
Identities = 67/116 (57%), Positives = 82/116 (70%)
Frame = +3 / +2
Query: 138 LTMFWDHQDAVLCCSFKEKPVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAE 317
L FW H DA+LCCS K F N G D+LETTLV +QDL L+ + D+ G+KAL A+
Sbjct: 26 LMPFWKHSDAILCCSLKPAFTLKFANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQ 205
Query: 318 VPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV* 485
+ K+M+QG AYLP GVC S MGR SYEQAVAWKV+G+DG CLA VNW+F+*
Sbjct: 206 LSKIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 373
Score = 109 bits (232), Expect = 6e-023
Identities = 54/116 (46%), Positives = 64/116 (55%)
Frame = -2 / -2
Query: 484 QTKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACS 305
Q K QLT AR C PSSP TF ATACS + RP+ D HTP GRYA PC + + A
Sbjct: 372 QMKVQLTSMSARHCGAPSSPTTFHATACSYDACRPMLDLHTPPGRYARPCCMILESCANR 193
Query: 304 AFLPGSSEILSRVRSCRATKVVSNMSTPIWLPKVNTGFSLKEQHKTAS*WSQNIVK 137
AF P SS S RS T+VVS MS P L ++ +EQ AS QN ++
Sbjct: 192 AFWPSSSRTASSGRSWMFTRVVSRMSKPALLANLSVKAGFREQQSIASLCFQNGIR 25
>gb|BG558719.1|BG558719 RHIZ2_59_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 369
Score = 170 bits (365), Expect = 3e-041
Identities = 68/94 (72%), Positives = 79/94 (84%)
Frame = +3 / +2
Query: 204 TFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMG 383
TF NQ G+DMLETTL+ALQD++L+KI D+ GRKAL E PK+M+QG+AYLP GVC+S MG
Sbjct: 2 TFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYPKIMQQGFAYLPGGVCVSSMG 181
Query: 384 RHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV* 485
R VSYEQAVAWKVL +D HCLAF FVNWSFV*
Sbjct: 182 RPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV* 283
Score = 133 bits (285), Expect = 3e-030
Identities = 61/93 (65%), Positives = 64/93 (68%)
Frame = -2 / -1
Query: 481 TKDQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCSISFGTSACSA 302
TKDQ T KARQC + SS RTF ATACS*+T RPI D HTP GRYA PC I G S SA
Sbjct: 279 TKDQFTNMKARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPCCIILGYSVQSA 100
Query: 301 FLPGSSEILSRVRSCRATKVVSNMSTPIWLPKV 203
FLP SS I SR S RA VVS+MS P WL KV
Sbjct: 99 FLPSSSRIFSREMSWRAINVVSSMSRPAWLAKV 1
>gb|BF588277.1|BF588277 FM1_39_G09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 474
Score = 160 bits (345), Expect = 1e-038
Identities = 66/126 (52%), Positives = 82/126 (65%)
Frame = +3 / +1
Query: 33 GSPEAATLVRWICQSYRYHLGADLVSHSDQAGESLLTMFWDHQDAVLCCSFKEKPVFTFG 212
GSPEA L WI +SYR H G ++ + +S L FW H DA+LCCS K F
Sbjct: 97 GSPEALALATWIGRSYRAHTGTEIRWSDTEGADSPLMPFWKHSDAILCCSLKPAFTLKFA 276
Query: 213 NQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHV 392
N G D+LETTLV +QDL L+ + D+ G+KAL A++ K+M+QG AYLP GVC S MGR
Sbjct: 277 NSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGRQA 456
Query: 393 SYEQAV 410
SYEQAV
Sbjct: 457 SYEQAV 474
>gb|CD429244.1|CD429244 ETH1_3_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_3_A10_A002 3', mRNA sequence
Length = 560
Score = 141 bits (303), Expect = 9e-033
Identities = 56/93 (60%), Positives = 70/93 (75%)
Frame = +3 / +2
Query: 207 FGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGR 386
F N G D+LETTLV +QDL L+ + D+ G+KAL A++ K+M+QG AYLP GVC S MGR
Sbjct: 23 FANSAGFDILETTLVNIQDLPLEAVLDDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGR 202
Query: 387 HVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV* 485
SYEQAVAWKV+G+DG CLA VNW+F+*
Sbjct: 203 QASYEQAVAWKVVGDDGAPQCLALMLVNWTFI* 301
>gb|BF587758.1|BF587758 FM1_33_B08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 367
Score = 90.4 bits (191), Expect(2) = 6e-032
Identities = 34/46 (73%), Positives = 37/46 (80%)
Frame = +3 / +3
Query: 336 QGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNW 473
QG+AYLP GVC+S MGR VSYEQAVAWKVL +D HCLAF FV W
Sbjct: 228 QGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVKW 365
Score = 71.2 bits (149), Expect(2) = 6e-021
Identities = 31/48 (64%), Positives = 33/48 (68%)
Frame = -2 / -1
Query: 475 DQLTKQKARQCTLPSSPRTFQATACS*ETWRPIPDRHTPAGRYA*PCS 332
D T ARQC + SS RTF ATACS*+T RPI D HTP GRYA P S
Sbjct: 367 DHFTNMNARQCGVSSSLRTFHATACS*DTGRPILDTHTPPGRYAKPWS 224
Score = 68.4 bits (143), Expect(2) = 6e-032
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3 / +1
Query: 207 FGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQ 338
F NQ G+DMLETTL+ALQD++L+KI D+ GRKAL E K+M+Q
Sbjct: 1 FANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEYLKIMQQ 132
Score = 50.6 bits (104), Expect(2) = 6e-021
Identities = 25/46 (54%), Positives = 26/46 (56%)
Frame = -2 / -3
Query: 349 YA*PCSISFGTSACSAFLPGSSEILSRVRSCRATKVVSNMSTPIWL 212
Y C I S SAFLP SS I SR S RA VVS+MS P WL
Sbjct: 143 YCITCCIILRYSVQSAFLPSSSRIFSREMSWRAINVVSSMSRPAWL 6
>gb|CL152854.1|CL152854 104_336_10780290_114_31365_306 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780290, DNA
sequence
Length = 772
Score = 120 bits (256), Expect = 3e-026
Identities = 45/52 (86%), Positives = 49/52 (94%)
Frame = +3 / +2
Query: 339 GYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCFVNWSFV*CDP 494
GYAYLP+GVC+SGMGRHVS++QAVAWKVLGED NVHCLAFCFVNWSFV* P
Sbjct: 101 GYAYLPSGVCMSGMGRHVSFDQAVAWKVLGEDSNVHCLAFCFVNWSFV*PRP 256
>gb|BF481329.1|BF481329 FM1_18_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 423
Score = 109 bits (233), Expect = 4e-023
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +3 / +2
Query: 285 DEPGRKALHAEVPKLMEQGYAYLPAGVCLSGMGRHVSYEQAVAWKVLGEDGNVHCLAFCF 464
D+ G+KAL A++ K+M+QG AYLP GVC S MGR SYEQAVAWKV+G+DG CLA
Sbjct: 2 DDDGQKALFAQLSKIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALML 181
Query: 465 VNWSFV* 485
VNW+F+*
Sbjct: 182 VNWTFI* 202
>gb|BZ349363.1|BZ349363 hq90g06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq90g06 5', DNA sequence
Length = 488
Score = 79.0 bits (166), Expect(3) = 1e-022
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = +3 / +3
Query: 195 PVFTFGNQMGVDMLETTLVALQDLTLDKISDEPGRKALHAEVPKLMEQ 338
PVFTF NQ G+DMLETT +AL D++L+KI D+ GRKAL E PK+M+Q
Sbjct: 216 PVFTFANQAGLDMLETTFIALHDISLEKILDDDGRKALCTEYPKIMQQ 359
Score = 38.2 bits (77), Expect(3) = 1e-022
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3 / +3
Query: 93 GADLVSHSDQAGESLLTMFWDHQDAVLCCSFK 188
GA+L+ Q ++ L W H D+++CCS K
Sbjct: 27 GAELLRTDTQCTDASLKALWQHSDSIMCCSLK 122
Score = 28.1 bits (55), Expect(3) = 1e-022
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3 / +1
Query: 339 GYAYLPAGVCLS 374
G+AYLP GVC+S
Sbjct: 448 GFAYLPGGVCVS 483
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 912,309,943
Number of Sequences: 832831
Number of extensions: 14227892
Number of successful extensions: 102807
Number of sequences better than 1.0e-020: 18
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21386462760
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)