TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves... 247 6e-099
gb|BF705162.1|BF705162 RHIZ2_2_B07.g1_A003 Rhizome2 (RHIZ2)... 175 4e-068
gb|CW232580.1|CW232580 104_685_11212893_148_37366_091 Sorgh... 126 3e-056
gb|CW061318.1|CW061318 104_305_10520338_114_30152 Sorghum m... 126 4e-056
gb|CW162020.1|CW162020 104_569_11150724_148_36438_046 Sorgh... 126 2e-051
gb|BG053502.1|BG053502 RHIZ2_9_H06.g1_A003 Rhizome2 (RHIZ2)... 79 2e-047
gb|AW922346.1|AW922346 DG1_18_A04.g1_A002 Dark Grown 1 (DG1... 141 9e-033
gb|CX611700.1|CX611700 ANR1_26_E06.b1_A002 Anaerobic roots ... 141 1e-032
gb|CW162019.1|CW162019 104_569_11150724_116_36437_046 Sorgh... 70 3e-031
gb|AW283962.1|AW283962 LG1_264_A11.g1_A002 Light Grown 1 (L... 70 4e-031
gb|BE360434.1|BE360434 DG1_63_A09.g1_A002 Dark Grown 1 (DG1... 134 1e-030
gb|CD463847.1|CD463847 ETH1_47_F04.b1_A002 Ethylene-treated... 96 3e-023
gb|BG240975.1|BG240975 OV1_40_F02.g1_A002 Ovary 1 (OV1) Sor... 108 8e-023
>gb|CN143415.1|CN143415 WOUND1_16_D04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_16_D04_A002 3', mRNA sequence
Length = 679
Score = 247 bits (534), Expect(7) = 6e-099
Identities = 104/111 (93%), Positives = 104/111 (93%)
Frame = +1 / -1
Query: 358 RFLAPFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGP 537
RFLA FFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMA AMTATATVCTGWKTAV SGP
Sbjct: 337 RFLAAFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAAAMTATATVCTGWKTAVNSGP 158
Query: 538 PLSMHQICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARNWRS 690
PLSMHQICRANATPDATRPAYRMVKSS PE TFHLLRSSSVK AM RNWRS
Sbjct: 157 PLSMHQICRANATPDATRPAYRMVKSSTPEWTFHLLRSSSVKTAMTRNWRS 5
Score = 210 bits (453), Expect(6) = 1e-083
Identities = 93/111 (83%), Positives = 94/111 (84%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
LLQFL IA FTEEDLSRWKV SG ELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ
Sbjct: 6 LLQFLVIAVFTEEDLSRWKVHSGVELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 185
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGARNL 357
PVQTVAVAVMA+AILGDQLYT LYFVLWGKSAEKK ARNL
Sbjct: 186 PVQTVAVAVMAAAILGDQLYTGGIIGAVLIVIGLYFVLWGKSAEKKAARNL 338
Score = 157 bits (337), Expect(6) = 7e-072
Identities = 60/64 (93%), Positives = 61/64 (95%)
Frame = -2 / +2
Query: 690 APPVPGHCRLHRGGPEQVEGPLRRGALHHPIRWPCGIRGSVCSADLVHRQGRPALHRRLP 511
APPVPGHCRLHRGGPEQVEGPLR GALHHPIRWP GIRG VCSADLVHRQGRPA+HRRLP
Sbjct: 5 APPVPGHCRLHRGGPEQVEGPLRSGALHHPIRWPGGIRGRVCSADLVHRQGRPAVHRRLP 184
Query: 510 ASAD 499
ASAD
Sbjct: 185 ASAD 196
Score = 110 bits (235), Expect(5) = 3e-059
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = +2 / -2
Query: 548 CTRSAEQTLPRMPQGQRIGW*RAPLLSGPSTCSGPPR*RRQWPGTGGA 691
CTRSAEQT PRMP GQRIGW*RAPLLSGPSTCSGPPR*RRQ PGTGGA
Sbjct: 147 CTRSAEQTRPRMPPGQRIGW*RAPLLSGPSTCSGPPR*RRQ*PGTGGA 4
Score = 89.0 bits (188), Expect(2) = 5e-027
Identities = 38/42 (90%), Positives = 38/42 (90%)
Frame = -1 / +1
Query: 655 RRT*AGGRSAQEGSSSPSYTLALWHPG*RLLCRSGASTGEAR 530
RRT*AGGRS QE SSSPSYTLA WHPG RLLCRSGASTGEAR
Sbjct: 40 RRT*AGGRSTQEWSSSPSYTLAWWHPGSRLLCRSGASTGEAR 165
Score = 84.0 bits (177), Expect(5) = 3e-041
Identities = 36/40 (90%), Positives = 37/40 (92%)
Frame = +3 / -3
Query: 531 RASPVDAPDLQSKRYPGCHKASV*DGEELPS*ADLPPAQV 650
RASPVDAPDLQSKR PGCH+ASV*DGEEL S* DLPPAQV
Sbjct: 164 RASPVDAPDLQSKRDPGCHQASV*DGEELHS*VDLPPAQV 45
Score = 73.9 bits (155), Expect(5) = 3e-059
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2 / -2
Query: 356 AGSWRPSSRRSCPTARSRGR*RSAQLQ*SLPC 451
AGSWRPSS RSCPTARSRGR*RSAQLQ*SLPC
Sbjct: 339 AGSWRPSSPRSCPTARSRGR*RSAQLQ*SLPC 244
Score = 69.8 bits (146), Expect(7) = 6e-099
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / -1
Query: 121 TVPHRQPMHTCSWLPDWNS*NHTTH 195
TVPH QPMHTCSWLPDWNS*NHTTH
Sbjct: 583 TVPHWQPMHTCSWLPDWNS*NHTTH 509
Score = 61.6 bits (128), Expect(6) = 1e-083
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3 / +3
Query: 197 V*VV*FQLFQSGNQEQVCMGCRCGTV 120
+*VV*FQLFQSGNQEQVCMGC+CGTV
Sbjct: 507 I*VV*FQLFQSGNQEQVCMGCQCGTV 584
Score = 59.7 bits (124), Expect(5) = 3e-059
Identities = 23/27 (85%), Positives = 25/27 (92%)
Frame = +2 / -2
Query: 116 YTLFHTGNPCTLVLGCQIGTAEITRLI 196
+ LFHTGNPCTLVLGC IGTAEIT+LI
Sbjct: 588 WLLFHTGNPCTLVLGCLIGTAEITQLI 508
Score = 59.3 bits (123), Expect(6) = 7e-072
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -1 / +1
Query: 196 YESCDFSCSNLATKNKCAWVAGVEQ 122
YE CDFSCSN ATKNKCAWVA VEQ
Sbjct: 508 YELCDFSCSNQATKNKCAWVASVEQ 582
Score = 58.3 bits (121), Expect(6) = 7e-072
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2 / +2
Query: 456 ALHGRDHWSCADRHRPLLRAV 394
ALHGRDHWSCADRHRPLLRAV
Sbjct: 239 ALHGRDHWSCADRHRPLLRAV 301
Score = 56.1 bits (116), Expect(5) = 3e-041
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +3 / -3
Query: 99 THSSMATHCSTPATHAHLFLVARLEQLKSHDSY 197
T S +CST ATHAHLFLVA LEQLKSH+SY
Sbjct: 605 TESQQHGYCSTLATHAHLFLVA*LEQLKSHNSY 507
Score = 55.1 bits (114), Expect(2) = 5e-027
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = -2 / +2
Query: 195 MSRVISAVPIWQPRTSVHGLPVWNS 121
MS VISAVPI QPRTSVHGLPVWNS
Sbjct: 509 MSCVISAVPIRQPRTSVHGLPVWNS 583
Score = 53.3 bits (110), Expect(5) = 3e-041
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3 / -3
Query: 399 HEVEADDDQHSSNDPSRVELV 461
HEVEADDDQHSSNDPSRVELV
Sbjct: 296 HEVEADDDQHSSNDPSRVELV 234
Score = 47.3 bits (97), Expect(6) = 1e-083
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / +3
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 360 QGGDVTRHLLGGEASVKDEEA 422
Score = 43.7 bits (89), Expect(7) = 6e-099
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3 / -3
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSAEQVPRHV SL
Sbjct: 419 FFVFHRSFSAEQVPRHVSSL 360
Score = 39.6 bits (80), Expect(6) = 1e-083
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = -1 / +2
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESCDFS 176
RDDRLVV Q SVV+LHLG Y SC S
Sbjct: 443 RDDRLVVDQGWTSVVVLHLGTYMSCVIS 526
Score = 39.6 bits (80), Expect(6) = 7e-072
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1 / +1
Query: 337 REQT*RGTCSAEKLRRKMKK 278
RE+T*RGTCSAEKLR K KK
Sbjct: 361 REET*RGTCSAEKLR*KTKK 420
Score = 39.1 bits (79), Expect(7) = 6e-099
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / -3
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 521 SHNSYTFPNAKRLRMSILGRRLNDHH 444
Score = 36.3 bits (73), Expect(5) = 3e-059
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = +2 / -1
Query: 185 TRLIRSQMQQDYAVLQLTDD*TIIT 259
T IRSQMQ DY L DD*TIIT
Sbjct: 517 TTHIRSQMQNDYGCPSLVDD*TIIT 443
Score = 28.1 bits (55), Expect(5) = 3e-041
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3 / -2
Query: 195 YGPKCNRTTLCSN*QTTKRSSR 260
Y PKC TT TTKRSSR
Sbjct: 507 YVPKCKTTTDVHPWSTTKRSSR 442
Score = 27.6 bits (54), Expect(6) = 7e-072
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2 / +3
Query: 258 VMIV*SSVNWSTA*SCCIWDRM 193
VMIV*SS *S CIW+R+
Sbjct: 444 VMIV*SSTKDGHP*SFCIWERI 509
Score = 27.6 bits (54), Expect(7) = 6e-099
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 20 YELWMK*FYSYT 55
+E WMK*FY+YT
Sbjct: 677 FESWMK*FYTYT 642
Score = 24.4 bits (47), Expect(5) = 3e-059
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1 / -2
Query: 19 VRIMDEVIL*LY 54
+RIMDEVIL LY
Sbjct: 678 IRIMDEVILYLY 643
Score = 24.0 bits (46), Expect(6) = 1e-083
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 61 VRCITIKSLHP*F 23
V+ I+IKSLHP*F
Sbjct: 636 VQRISIKSLHP*F 674
Score = 24.0 bits (46), Expect(7) = 6e-099
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 83 QQQSTDSQQHGY 118
Q + T+SQQHGY
Sbjct: 617 QSRLTESQQHGY 582
Score = 23.5 bits (45), Expect(5) = 3e-041
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3 / -1
Query: 21 TNYG*SDFIVIHLT 62
+N+G*SDFI+I T
Sbjct: 676 SNHG*SDFILIRCT 635
Score = 23.1 bits (44), Expect(6) = 7e-072
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 54 V*L*NHFIHNS 22
V*+*NHFIH+S
Sbjct: 643 V*V*NHFIHDS 675
Score = 22.1 bits (42), Expect(6) = 1e-083
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / +1
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 415 KKLRPCWRE 441
Score = 21.7 bits (41), Expect(7) = 6e-099
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / -3
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 443 ASRQHGRSFFVFHR 402
>gb|BF705162.1|BF705162 RHIZ2_2_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 477
Score = 175 bits (377), Expect(5) = 4e-068
Identities = 73/77 (94%), Positives = 73/77 (94%)
Frame = +1 / -1
Query: 358 RFLAPFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGP 537
RFLA FFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMA MTATATVCTGWKTAV SGP
Sbjct: 231 RFLAAFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAADMTATATVCTGWKTAVNSGP 52
Query: 538 PLSMHQICRANATPDAT 588
PLSMHQICRANATPDAT
Sbjct: 51 PLSMHQICRANATPDAT 1
Score = 141 bits (303), Expect(5) = 2e-058
Identities = 62/77 (80%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 587 VASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXL 408
VASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVM++AILGDQLYT L
Sbjct: 2 VASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMSAAILGDQLYTGGIIGAVLIVIGL 181
Query: 407 YFVLWGKSAEKKGARNL 357
YFVLWGKSAEKK ARNL
Sbjct: 182 YFVLWGKSAEKKAARNL 232
Score = 73.9 bits (155), Expect(4) = 9e-036
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2 / -2
Query: 356 AGSWRPSSRRSCPTARSRGR*RSAQLQ*SLPC 451
AGSWRPSS RSCPTARSRGR*RSAQLQ*SLPC
Sbjct: 233 AGSWRPSSPRSCPTARSRGR*RSAQLQ*SLPC 138
Score = 68.4 bits (143), Expect(5) = 6e-040
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 585 GIRGSVCSADLVHRQGRPALHRRLPASAD 499
GIRG VCSADLVHRQGRPA+HRRLPASAD
Sbjct: 4 GIRGCVCSADLVHRQGRPAVHRRLPASAD 90
Score = 58.3 bits (121), Expect(5) = 6e-040
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2 / +1
Query: 456 ALHGRDHWSCADRHRPLLRAV 394
ALHGRDHWSCADRHRPLLRAV
Sbjct: 133 ALHGRDHWSCADRHRPLLRAV 195
Score = 58.3 bits (121), Expect(5) = 4e-068
Identities = 20/22 (90%), Positives = 20/22 (90%)
Frame = +1 / -1
Query: 130 HRQPMHTCSWLPDWNS*NHTTH 195
H QPMHTCSWLPDWNS* HTTH
Sbjct: 468 HWQPMHTCSWLPDWNS*IHTTH 403
Score = 53.3 bits (110), Expect(4) = 5e-021
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3 / -3
Query: 399 HEVEADDDQHSSNDPSRVELV 461
HEVEADDDQHSSNDPSRVELV
Sbjct: 190 HEVEADDDQHSSNDPSRVELV 128
Score = 51.0 bits (105), Expect(5) = 2e-058
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1 / +3
Query: 196 YESCDFSCSNLATKNKCAWVA 134
YE C+FSCSN ATKNKCAWVA
Sbjct: 402 YELCEFSCSNQATKNKCAWVA 464
Score = 49.2 bits (101), Expect(4) = 9e-036
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +2 / -2
Query: 131 TGNPCTLVLGCQIGTAEITRLI 196
TGNPCTLVLGC IGTAE T+LI
Sbjct: 467 TGNPCTLVLGCLIGTAEFTQLI 402
Score = 47.8 bits (98), Expect(4) = 9e-036
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +3 / -3
Query: 531 RASPVDAPDLQSKRYPGCH 587
RASPVDAPDLQSKR PGCH
Sbjct: 58 RASPVDAPDLQSKRNPGCH 2
Score = 47.8 bits (98), Expect(5) = 6e-040
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 197 V*VV*FQLFQSGNQEQVCMGCR 132
+*VV* QLFQSGNQEQVCMGC+
Sbjct: 401 I*VV*IQLFQSGNQEQVCMGCQ 466
Score = 47.3 bits (97), Expect(5) = 2e-058
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / +2
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 254 QGGDVTRHLLGGEASVKDEEA 316
Score = 43.7 bits (89), Expect(4) = 5e-021
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3 / -3
Query: 135 ATHAHLFLVARLEQLKSHDSY 197
ATHAHLFLVA LEQL SH+SY
Sbjct: 463 ATHAHLFLVA*LEQLNSHNSY 401
Score = 39.6 bits (80), Expect(5) = 4e-068
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / -3
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSA QVPRHV SL
Sbjct: 313 FFVFHRSFSA*QVPRHVSSL 254
Score = 39.1 bits (79), Expect(5) = 2e-058
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / +1
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESC 185
RDDRLVV Q SVV+LHLG Y SC
Sbjct: 337 RDDRLVVDQGWTSVVVLHLGTYMSC 411
Score = 39.1 bits (79), Expect(5) = 4e-068
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / -3
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 415 SHNSYTFPNAKRLRMSILGRRLNDHH 338
Score = 36.3 bits (73), Expect(4) = 9e-036
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = +2 / -1
Query: 185 TRLIRSQMQQDYAVLQLTDD*TIIT 259
T IRSQMQ DY L DD*TIIT
Sbjct: 411 TTHIRSQMQNDYGCPSLVDD*TIIT 337
Score = 35.9 bits (72), Expect(5) = 6e-040
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -1 / +3
Query: 337 REQT*RGTCSAEKLRRKMKK 278
RE+T*RGTC AEKLR K KK
Sbjct: 255 REET*RGTC*AEKLR*KTKK 314
Score = 32.2 bits (64), Expect(4) = 5e-021
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / -2
Query: 548 CTRSAEQTLPRMP 586
CTRSAEQT PRMP
Sbjct: 41 CTRSAEQTQPRMP 3
Score = 28.1 bits (55), Expect(4) = 5e-021
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3 / -2
Query: 195 YGPKCNRTTLCSN*QTTKRSSR 260
Y PKC TT TTKRSSR
Sbjct: 401 YVPKCKTTTDVHPWSTTKRSSR 336
Score = 27.6 bits (54), Expect(5) = 6e-040
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2 / +2
Query: 258 VMIV*SSVNWSTA*SCCIWDRM 193
VMIV*SS *S CIW+R+
Sbjct: 338 VMIV*SSTKDGHP*SFCIWERI 403
Score = 22.1 bits (42), Expect(5) = 2e-058
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / +3
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 309 KKLRPCWRE 335
Score = 21.7 bits (41), Expect(5) = 4e-068
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / -3
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 337 ASRQHGRSFFVFHR 296
>gb|CW232580.1|CW232580 104_685_11212893_148_37366_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11212893, DNA
sequence
Length = 710
Score = 126 bits (269), Expect(3) = 3e-056
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +1 / +2
Query: 442 PPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQICRANATPDATRPAYR 603
PPV*SWSPRMA AMTATATVCTGWKTAV SGPPLSMHQICRANATPDATRP +R
Sbjct: 263 PPV*SWSPRMAAAMTATATVCTGWKTAVNSGPPLSMHQICRANATPDATRPYHR 424
Score = 114 bits (243), Expect(4) = 5e-056
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3 / -3
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYT 447
GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMA+AILGDQLYT
Sbjct: 414 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMAAAILGDQLYT 268
Score = 84.9 bits (179), Expect(4) = 5e-056
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -2 / -3
Query: 690 APPVPGHCRLHRGGPEQVEGPLRRGALHHPIR 595
APPVPGHCRLHRGGPEQVEGPLR GALHHPIR
Sbjct: 603 APPVPGHCRLHRGGPEQVEGPLRSGALHHPIR 508
Score = 79.0 bits (166), Expect(3) = 3e-056
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +2 / +2
Query: 593 QRIGW*RAPLLSGPSTCSGPPR*RRQWPGTGGA 691
QRIGW*RAPLLSGPSTCSGPPR*RRQ PGTGGA
Sbjct: 506 QRIGW*RAPLLSGPSTCSGPPR*RRQ*PGTGGA 604
Score = 68.4 bits (143), Expect(3) = 2e-028
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1 / +1
Query: 589 RPAYRMVKSSPPERTFHLLRSSSVKAAMARNWRS 690
R AYRMVKSS PE TFHLLRSSSVK AM RNWRS
Sbjct: 502 RTAYRMVKSSTPEWTFHLLRSSSVKTAMTRNWRS 603
Score = 68.4 bits (143), Expect(2) = 1e-024
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2 / -2
Query: 585 GIRGSVCSADLVHRQGRPALHRRLPASAD 499
GIRG VCSADLVHRQGRPA+HRRLPASAD
Sbjct: 406 GIRGRVCSADLVHRQGRPAVHRRLPASAD 320
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 28/32 (87%), Positives = 28/32 (87%)
Frame = -3 / -1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
LLQFL IA FTEEDLSRWKV SG ELFTILYA
Sbjct: 602 LLQFLVIAVFTEEDLSRWKVHSGVELFTILYA 507
Score = 56.5 bits (117), Expect(3) = 3e-056
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / +2
Query: 373 FFSALLPHSTK*RPMTISTAPMIPP 447
FFSALLPHSTK*RPMTISTAPMI P
Sbjct: 5 FFSALLPHSTK*RPMTISTAPMILP 79
Score = 51.0 bits (105), Expect(3) = 2e-028
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +2 / +3
Query: 371 PSSRRSCPTARSRGR*RSAQLQ*S 442
PSS RSCPTARSRGR*RSAQLQ*S
Sbjct: 3 PSSPRSCPTARSRGR*RSAQLQ*S 74
Score = 47.8 bits (98), Expect(3) = 2e-028
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / +1
Query: 531 RASPVDAPDLQSKRYPGCHK 590
RASPVDAPDLQSKR PGCH+
Sbjct: 352 RASPVDAPDLQSKRDPGCHQ 411
Score = 46.4 bits (95), Expect(4) = 5e-056
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -2 / -2
Query: 444 RDHWSCADRHRPLLRAV 394
+DHWSCADRHRPLLRAV
Sbjct: 76 QDHWSCADRHRPLLRAV 26
Score = 33.1 bits (66), Expect(4) = 5e-056
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 407 YFVLWGKSAEKK 372
YFVLWGKSAEKK
Sbjct: 39 YFVLWGKSAEKK 4
>gb|CW061318.1|CW061318 104_305_10520338_114_30152 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10520338, DNA
sequence
Length = 641
Score = 126 bits (269), Expect(5) = 4e-056
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +1 / +3
Query: 442 PPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQICRANATPDATRPAYR 603
PPV*SWSPRMA AMTATATVCTGWKTAV SGPPLSMHQICRANATPDATRP +R
Sbjct: 459 PPV*SWSPRMAAAMTATATVCTGWKTAVNSGPPLSMHQICRANATPDATRPYHR 620
Score = 114 bits (243), Expect(6) = 5e-056
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3 / -2
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYT 447
GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMA+AILGDQLYT
Sbjct: 610 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMAAAILGDQLYT 464
Score = 64.8 bits (135), Expect(3) = 4e-023
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1 / +3
Query: 358 RFLAPFFSALLPHSTK*RPMTISTAPMIPP 447
RFLA FFSALLPHSTK*RPMTISTAPMI P
Sbjct: 186 RFLAAFFSALLPHSTK*RPMTISTAPMILP 275
Score = 64.8 bits (135), Expect(5) = 4e-056
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +2 / +1
Query: 356 AGSWRPSSRRSCPTARSRGR*RSAQLQ*S 442
AGSWRPSS RSCPTARSRGR*RSAQLQ*S
Sbjct: 184 AGSWRPSSPRSCPTARSRGR*RSAQLQ*S 270
Score = 47.8 bits (98), Expect(3) = 4e-023
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 531 RASPVDAPDLQSKRYPGCHK 590
RASPVDAPDLQSKR PGCH+
Sbjct: 548 RASPVDAPDLQSKRDPGCHQ 607
Score = 47.3 bits (97), Expect(6) = 5e-056
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / -2
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 163 QGGDVTRHLLGGEASVKDEEA 101
Score = 46.4 bits (95), Expect(6) = 5e-056
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = -2 / -1
Query: 444 RDHWSCADRHRPLLRAV 394
+DHWSCADRHRPLLRAV
Sbjct: 272 QDHWSCADRHRPLLRAV 222
Score = 43.7 bits (89), Expect(5) = 4e-056
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3 / +2
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSAEQVPRHV SL
Sbjct: 104 FFVFHRSFSAEQVPRHVSSL 163
Score = 41.8 bits (85), Expect(6) = 5e-056
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -3 / -2
Query: 407 YFVLWGKSAEKKGARNL 357
YFVLWGKSAEKK ARNL
Sbjct: 235 YFVLWGKSAEKKAARNL 185
Score = 39.1 bits (79), Expect(6) = 5e-056
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / -1
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESC 185
RDDRLVV Q SVV+LHLG Y SC
Sbjct: 80 RDDRLVVDQGWTSVVVLHLGTYMSC 6
Score = 39.1 bits (79), Expect(5) = 4e-056
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / +2
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 2 SHNSYTFPNAKRLRMSILGRRLNDHH 79
Score = 36.3 bits (73), Expect(3) = 4e-023
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = +2 / +3
Query: 185 TRLIRSQMQQDYAVLQLTDD*TIIT 259
T IRSQMQ DY L DD*TIIT
Sbjct: 6 TTHIRSQMQNDYGCPSLVDD*TIIT 80
Score = 22.1 bits (42), Expect(6) = 5e-056
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / -3
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 108 KKLRPCWRE 82
Score = 21.7 bits (41), Expect(5) = 4e-056
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / +2
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 80 ASRQHGRSFFVFHR 121
>gb|CW162020.1|CW162020 104_569_11150724_148_36438_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150724, DNA
sequence
Length = 742
Score = 126 bits (269), Expect(3) = 2e-051
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +1 / -2
Query: 442 PPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQICRANATPDATRPAYR 603
PPV*SWSPRMA AMTATATVCTGWKTAV SGPPLSMHQICRANATPDATRP +R
Sbjct: 513 PPV*SWSPRMAAAMTATATVCTGWKTAVNSGPPLSMHQICRANATPDATRPYHR 352
Score = 114 bits (243), Expect(3) = 1e-049
Identities = 48/49 (97%), Positives = 49/49 (100%)
Frame = -3 / +2
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYT 447
GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMA+AILGDQLYT
Sbjct: 362 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMAAAILGDQLYT 508
Score = 84.9 bits (179), Expect(3) = 1e-049
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = -2 / +2
Query: 690 APPVPGHCRLHRGGPEQVEGPLRRGALHHPIR 595
APPVPGHCRLHRGGPEQVEGPLR GALHHPIR
Sbjct: 173 APPVPGHCRLHRGGPEQVEGPLRSGALHHPIR 268
Score = 79.0 bits (166), Expect(3) = 2e-051
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +2 / -2
Query: 593 QRIGW*RAPLLSGPSTCSGPPR*RRQWPGTGGA 691
QRIGW*RAPLLSGPSTCSGPPR*RRQ PGTGGA
Sbjct: 270 QRIGW*RAPLLSGPSTCSGPPR*RRQ*PGTGGA 172
Score = 68.4 bits (143), Expect(3) = 6e-023
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1 / -1
Query: 589 RPAYRMVKSSPPERTFHLLRSSSVKAAMARNWRS 690
R AYRMVKSS PE TFHLLRSSSVK AM RNWRS
Sbjct: 274 RTAYRMVKSSTPEWTFHLLRSSSVKTAMTRNWRS 173
Score = 68.4 bits (143), Expect(2) = 1e-024
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2 / +1
Query: 585 GIRGSVCSADLVHRQGRPALHRRLPASAD 499
GIRG VCSADLVHRQGRPA+HRRLPASAD
Sbjct: 370 GIRGRVCSADLVHRQGRPAVHRRLPASAD 456
Score = 65.7 bits (137), Expect(2) = 1e-024
Identities = 28/32 (87%), Positives = 28/32 (87%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYA 594
LLQFL IA FTEEDLSRWKV SG ELFTILYA
Sbjct: 174 LLQFLVIAVFTEEDLSRWKVHSGVELFTILYA 269
Score = 47.8 bits (98), Expect(3) = 6e-023
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3 / -1
Query: 531 RASPVDAPDLQSKRYPGCHK 590
RASPVDAPDLQSKR PGCH+
Sbjct: 424 RASPVDAPDLQSKRDPGCHQ 365
Score = 40.5 bits (82), Expect(3) = 1e-049
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = -2 / +1
Query: 444 RDHWSCADRHRPLL 403
+DHWSCADRHRPLL
Sbjct: 700 QDHWSCADRHRPLL 741
Score = 40.0 bits (81), Expect(3) = 2e-051
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3 / -1
Query: 402 EVEADDDQHSSNDPSRVELVP 464
EVEADDDQHSSNDP++ P
Sbjct: 742 EVEADDDQHSSNDPAKFR*TP 680
Score = 32.7 bits (65), Expect(3) = 6e-023
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1 / -2
Query: 403 K*RPMTISTAPMIPP 447
K*RPMTISTAPMI P
Sbjct: 741 K*RPMTISTAPMILP 697
>gb|BG053502.1|BG053502 RHIZ2_9_H06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 440
Score = 78.5 bits (165), Expect(7) = 2e-047
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1 / -1
Query: 358 RFLAPFFSALLPHSTK*RPMTISTAPMIPPV*SW 459
RFLA FFSALLPHSTK*RPMTISTAPMIPPV*SW
Sbjct: 104 RFLAAFFSALLPHSTK*RPMTISTAPMIPPV*SW 3
Score = 73.9 bits (155), Expect(4) = 4e-031
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2 / -2
Query: 356 AGSWRPSSRRSCPTARSRGR*RSAQLQ*SLPC 451
AGSWRPSS RSCPTARSRGR*RSAQLQ*SLPC
Sbjct: 106 AGSWRPSSPRSCPTARSRGR*RSAQLQ*SLPC 11
Score = 65.7 bits (137), Expect(7) = 2e-047
Identities = 23/25 (92%), Positives = 23/25 (92%)
Frame = +1 / -1
Query: 121 TVPHRQPMHTCSWLPDWNS*NHTTH 195
TVPH QPMHTCSWLPDWNS* HTTH
Sbjct: 350 TVPHWQPMHTCSWLPDWNS*IHTTH 276
Score = 58.8 bits (122), Expect(6) = 4e-039
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = -3 / +1
Query: 197 V*VV*FQLFQSGNQEQVCMGCRCGTV 120
+*VV* QLFQSGNQEQVCMGC+CGTV
Sbjct: 274 I*VV*IQLFQSGNQEQVCMGCQCGTV 351
Score = 58.3 bits (121), Expect(6) = 4e-039
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -2 / +3
Query: 456 ALHGRDHWSCADRHRPLLRAV 394
ALHGRDHWSCADRHRPLLRAV
Sbjct: 6 ALHGRDHWSCADRHRPLLRAV 68
Score = 57.9 bits (120), Expect(4) = 4e-031
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / -2
Query: 116 YTLFHTGNPCTLVLGCQIGTAEITRLI 196
+ LFHTGNPCTLVLGC IGTAE T+LI
Sbjct: 355 WLLFHTGNPCTLVLGCLIGTAEFTQLI 275
Score = 57.4 bits (119), Expect(5) = 5e-027
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = -1 / +2
Query: 196 YESCDFSCSNLATKNKCAWVAGVEQ 122
YE C+FSCSN ATKNKCAWVA VEQ
Sbjct: 275 YELCEFSCSNQATKNKCAWVASVEQ 349
Score = 53.3 bits (110), Expect(4) = 7e-021
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3 / -3
Query: 399 HEVEADDDQHSSNDPSRVELV 461
HEVEADDDQHSSNDPSRVELV
Sbjct: 63 HEVEADDDQHSSNDPSRVELV 1
Score = 51.9 bits (107), Expect(4) = 7e-021
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3 / -3
Query: 99 THSSMATHCSTPATHAHLFLVARLEQLKSHDSY 197
+ S +CST ATHAHLFLVA LEQL SH+SY
Sbjct: 372 SESQQHGYCSTLATHAHLFLVA*LEQLNSHNSY 274
Score = 48.7 bits (100), Expect(5) = 5e-027
Identities = 22/35 (62%), Positives = 22/35 (62%)
Frame = -3 / +1
Query: 461 DQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGARNL 357
DQLYT LYFVLWGKSAEKK ARNL
Sbjct: 1 DQLYTGGIIGAVLIVIGLYFVLWGKSAEKKAARNL 105
Score = 47.3 bits (97), Expect(6) = 4e-039
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / +1
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 127 QGGDVTRHLLGGEASVKDEEA 189
Score = 39.6 bits (80), Expect(7) = 2e-047
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3 / -3
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSA QVPRHV SL
Sbjct: 186 FFVFHRSFSA*QVPRHVSSL 127
Score = 39.1 bits (79), Expect(6) = 4e-039
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1 / +3
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESC 185
RDDRLVV Q SVV+LHLG Y SC
Sbjct: 210 RDDRLVVDQGWTSVVVLHLGTYMSC 284
Score = 39.1 bits (79), Expect(7) = 2e-047
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / -3
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 288 SHNSYTFPNAKRLRMSILGRRLNDHH 211
Score = 36.3 bits (73), Expect(4) = 4e-031
Identities = 17/25 (68%), Positives = 17/25 (68%)
Frame = +2 / -1
Query: 185 TRLIRSQMQQDYAVLQLTDD*TIIT 259
T IRSQMQ DY L DD*TIIT
Sbjct: 284 TTHIRSQMQNDYGCPSLVDD*TIIT 210
Score = 35.9 bits (72), Expect(5) = 5e-027
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -1 / +2
Query: 337 REQT*RGTCSAEKLRRKMKK 278
RE+T*RGTC AEKLR K KK
Sbjct: 128 REET*RGTC*AEKLR*KTKK 187
Score = 28.1 bits (55), Expect(4) = 7e-021
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3 / -2
Query: 195 YGPKCNRTTLCSN*QTTKRSSR 260
Y PKC TT TTKRSSR
Sbjct: 274 YVPKCKTTTDVHPWSTTKRSSR 209
Score = 27.6 bits (54), Expect(5) = 5e-027
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2 / +1
Query: 258 VMIV*SSVNWSTA*SCCIWDRM 193
VMIV*SS *S CIW+R+
Sbjct: 211 VMIV*SSTKDGHP*SFCIWERI 276
Score = 26.3 bits (51), Expect(7) = 2e-047
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2 / -2
Query: 23 ELWMK*FYSYT 55
E WMK*FY+YT
Sbjct: 439 ESWMK*FYTYT 407
Score = 24.0 bits (46), Expect(6) = 4e-039
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1 / +2
Query: 61 VRCITIKSLHP*F 23
V+ I+IKSLHP*F
Sbjct: 401 VQRISIKSLHP*F 439
Score = 23.1 bits (44), Expect(5) = 5e-027
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / +3
Query: 54 V*L*NHFIHNS 22
V*+*NHFIH+S
Sbjct: 408 V*V*NHFIHDS 440
Score = 23.1 bits (44), Expect(4) = 7e-021
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3 / -3
Query: 24 NYG*SDFIVIHLT 62
N+G*SDFI+I T
Sbjct: 438 NHG*SDFILIRCT 400
Score = 23.1 bits (44), Expect(4) = 4e-031
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1 / -1
Query: 22 RIMDEVIL*LY 54
RIMDEVIL LY
Sbjct: 440 RIMDEVILYLY 408
Score = 22.1 bits (42), Expect(6) = 4e-039
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / +2
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 182 KKLRPCWRE 208
Score = 22.1 bits (42), Expect(7) = 2e-047
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 83 QQQSTDSQQHGY 118
Q + ++SQQHGY
Sbjct: 384 QSRLSESQQHGY 349
Score = 21.7 bits (41), Expect(7) = 2e-047
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / -3
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 210 ASRQHGRSFFVFHR 169
>gb|AW922346.1|AW922346 DG1_18_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 141 bits (303), Expect = 9e-033
Identities = 57/83 (68%), Positives = 69/83 (83%)
Frame = +1 / -1
Query: 379 SALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQI 558
S+LLP ST+*RP +STAPM+PP *++SPR+++AM AT +VCTGW TA +GPP SMHQI
Sbjct: 256 SSLLPQSTR*RPAMMSTAPMMPPR*NFSPRVSDAMIATTSVCTGWYTATNTGPPRSMHQI 77
Query: 559 CRANATPDATRPAYRMVKSSPPE 627
C ANATPDA PAYR+VKSS PE
Sbjct: 76 CTANATPDAMNPAYRIVKSSDPE 8
Score = 129 bits (276), Expect = 5e-029
Identities = 53/84 (63%), Positives = 62/84 (73%)
Frame = -3 / +3
Query: 626 SGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYT 447
SG ELFTILYAG +ASGVAFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 9 SGSELFTILYAGFIASGVAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASLTLGEKFYL 188
Query: 446 XXXXXXXXXXXXLYFVLWGKSAEK 375
LY VLWGKS E+
Sbjct: 189 GGIIGAVLIIAGLYLVLWGKSEER 260
>gb|CX611700.1|CX611700 ANR1_26_E06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_E06_A002 3', mRNA sequence
Length = 842
Score = 141 bits (302), Expect = 1e-032
Identities = 57/114 (50%), Positives = 76/114 (66%)
Frame = -3 / +1
Query: 686 LQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQP 507
+Q + +A F E ++ RWK+ SGGEL TILYAG+V G+A+ + IWCI++GGP F +VFQP
Sbjct: 217 IQLVVVAPFFESNIERWKIHSGGELLTILYAGIVVLGIAWYIMIWCINKGGPHFVSVFQP 396
Query: 506 VQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKKGARNLLQDQ 345
+QTV VA+MAS LGD+LY LY VLW KS E K +LL ++
Sbjct: 397 LQTVMVAIMASIFLGDKLYIGGVIGAVVIVAGLYCVLWAKSKETKSDSDLLSER 558
Score = 133 bits (284), Expect = 4e-030
Identities = 58/96 (60%), Positives = 67/96 (69%)
Frame = +1 / -1
Query: 355 SRFLAPFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSG 534
SR L+ S L H+T+*RP T++TAP+ PP+*S SPR EAM AT TVC GWKT K G
Sbjct: 548 SRSLSLLVSLLFAHNTQ*RPATMTTAPITPPM*SLSPRKIEAMIATITVCNGWKTETK*G 369
Query: 535 PPLSMHQICRANATPDATRPAYRMVKSSPPERTFHL 642
PPL MHQI A P T PAY+MV+SSPPE FHL
Sbjct: 368 PPLFMHQIIIYQAIPSTTIPAYKMVRSSPPEWIFHL 261
>gb|CW162019.1|CW162019 104_569_11150724_116_36437_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150724, DNA
sequence
Length = 694
Score = 69.8 bits (146), Expect(6) = 3e-031
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / +2
Query: 121 TVPHRQPMHTCSWLPDWNS*NHTTH 195
TVPH QPMHTCSWLPDWNS*NHTTH
Sbjct: 449 TVPHWQPMHTCSWLPDWNS*NHTTH 523
Score = 61.6 bits (128), Expect(5) = 1e-027
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3 / -2
Query: 197 V*VV*FQLFQSGNQEQVCMGCRCGTV 120
+*VV*FQLFQSGNQEQVCMGC+CGTV
Sbjct: 525 I*VV*FQLFQSGNQEQVCMGCQCGTV 448
Score = 47.3 bits (97), Expect(5) = 1e-027
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / -2
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 672 QGGDVTRHLLGGEASVKDEEA 610
Score = 43.7 bits (89), Expect(6) = 3e-031
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3 / +1
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSAEQVPRHV SL
Sbjct: 613 FFVFHRSFSAEQVPRHVSSL 672
Score = 39.6 bits (80), Expect(5) = 1e-027
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = -1 / -1
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESCDFS 176
RDDRLVV Q SVV+LHLG Y SC S
Sbjct: 589 RDDRLVVDQGWTSVVVLHLGTYMSCVIS 506
Score = 39.1 bits (79), Expect(6) = 3e-031
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / +1
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 511 SHNSYTFPNAKRLRMSILGRRLNDHH 588
Score = 27.6 bits (54), Expect(6) = 3e-031
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 20 YELWMK*FYSYT 55
+E WMK*FY+YT
Sbjct: 355 FESWMK*FYTYT 390
Score = 25.4 bits (49), Expect(5) = 1e-027
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2 / -3
Query: 54 V*L*NHFIHNSYQKK 10
V*+*NHFIH+S Q +
Sbjct: 389 V*V*NHFIHDSNQSR 345
Score = 24.0 bits (46), Expect(6) = 3e-031
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 83 QQQSTDSQQHGY 118
Q + T+SQQHGY
Sbjct: 415 QSRLTESQQHGY 450
Score = 22.1 bits (42), Expect(5) = 1e-027
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / -3
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 617 KKLRPCWRE 591
Score = 21.7 bits (41), Expect(6) = 3e-031
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / +1
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 589 ASRQHGRSFFVFHR 630
>gb|AW283962.1|AW283962 LG1_264_A11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 350
Score = 69.8 bits (146), Expect(6) = 4e-031
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +1 / -1
Query: 121 TVPHRQPMHTCSWLPDWNS*NHTTH 195
TVPH QPMHTCSWLPDWNS*NHTTH
Sbjct: 266 TVPHWQPMHTCSWLPDWNS*NHTTH 192
Score = 61.6 bits (128), Expect(4) = 2e-025
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -3 / +1
Query: 197 V*VV*FQLFQSGNQEQVCMGCRCGTV 120
+*VV*FQLFQSGNQEQVCMGC+CGTV
Sbjct: 190 I*VV*FQLFQSGNQEQVCMGCQCGTV 267
Score = 47.3 bits (97), Expect(4) = 2e-025
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -3 / +1
Query: 338 QGADVTRHLLGGEASAKDEEA 276
QG DVTRHLLGGEAS KDEEA
Sbjct: 43 QGGDVTRHLLGGEASVKDEEA 105
Score = 43.7 bits (89), Expect(6) = 4e-031
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3 / -3
Query: 279 FFIFRRSFSAEQVPRHVCSL 338
FF+F RSFSAEQVPRHV SL
Sbjct: 102 FFVFHRSFSAEQVPRHVSSL 43
Score = 39.6 bits (80), Expect(4) = 2e-025
Identities = 19/28 (67%), Positives = 20/28 (71%)
Frame = -1 / +3
Query: 259 RDDRLVVCQLEHSVVLLHLGPYESCDFS 176
RDDRLVV Q SVV+LHLG Y SC S
Sbjct: 126 RDDRLVVDQGWTSVVVLHLGTYMSCVIS 209
Score = 39.1 bits (79), Expect(6) = 4e-031
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / -3
Query: 181 NHTTHTVPNATGLRCAPIDRRLNDHH 258
+H ++T PNA LR + + RRLNDHH
Sbjct: 204 SHNSYTFPNAKRLRMSILGRRLNDHH 127
Score = 24.0 bits (46), Expect(6) = 4e-031
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / -3
Query: 83 QQQSTDSQQHGY 118
Q + T+SQQHGY
Sbjct: 300 QSRLTESQQHGY 265
Score = 22.1 bits (42), Expect(4) = 2e-025
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1 / +2
Query: 280 KQPRPCWRD 254
K+ RPCWR+
Sbjct: 98 KKLRPCWRE 124
Score = 21.7 bits (41), Expect(6) = 4e-031
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2 / -2
Query: 356 AGSWRPS 376
AGSWRPS
Sbjct: 22 AGSWRPS 2
Score = 21.7 bits (41), Expect(6) = 4e-031
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3 / -3
Query: 252 SSRQHGRGCFFIFR 293
+SRQHGR F R
Sbjct: 126 ASRQHGRSFFVFHR 85
>gb|BE360434.1|BE360434 DG1_63_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 134 bits (288), Expect = 1e-030
Identities = 54/79 (68%), Positives = 66/79 (83%)
Frame = +1 / -1
Query: 379 SALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQI 558
S+LLP ST+*RP +STAPM+PP *++SPR+++AM AT +VCTGW TA +GPP SMHQI
Sbjct: 237 SSLLPQSTR*RPAMMSTAPMMPPR*NFSPRVSDAMIATTSVCTGWYTATNTGPPRSMHQI 58
Query: 559 CRANATPDATRPAYRMVKS 615
C ANATPDA PAYR+VKS
Sbjct: 57 CTANATPDAMNPAYRIVKS 1
Score = 122 bits (261), Expect = 6e-027
Identities = 50/80 (62%), Positives = 59/80 (73%)
Frame = -3 / +2
Query: 614 LFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXX 435
LFTILYAG +ASGVAFA+QIWCIDRGGP+F AV+QPVQT+ VA+MAS LG++ Y
Sbjct: 2 LFTILYAGFIASGVAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASLTLGEKFYLGGII 181
Query: 434 XXXXXXXXLYFVLWGKSAEK 375
LY VLWGKS E+
Sbjct: 182 GAVLIIAGLYLVLWGKSEER 241
>gb|CD463847.1|CD463847 ETH1_47_F04.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_47_F04_A002 3', mRNA sequence
Length = 631
Score = 96.4 bits (204), Expect(2) = 3e-023
Identities = 40/83 (48%), Positives = 53/83 (63%)
Frame = -3 / +3
Query: 593 GLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXXXX 414
G+V G+A+ + IWCI++GGP F +VFQP+QTV VA+MAS LGD+LY
Sbjct: 114 GIVVLGIAWYIMIWCINKGGPHFVSVFQPLQTVMVAIMASIFLGDKLYIGGVIGAVVIAA 293
Query: 413 XLYFVLWGKSAEKKGARNLLQDQ 345
LY VLW KS E K +LL ++
Sbjct: 294 GLYCVLWAKSKETKSDSDLLSER 362
Score = 33.1 bits (66), Expect(2) = 3e-023
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3 / +2
Query: 686 LQFLAIAAFTEEDLSRWKVRSGG 618
+Q + +A F E ++ RWK+ SGG
Sbjct: 47 IQLVVVAPFFESNIERWKIHSGG 115
>gb|BG240975.1|BG240975 OV1_40_F02.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 535
Score = 108 bits (231), Expect = 8e-023
Identities = 47/84 (55%), Positives = 56/84 (66%)
Frame = +1 / -3
Query: 355 SRFLAPFFSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSG 534
SR L+ S L H+T+*RP T++TAP+ PP+*S SPR EAM AT TVC GWKT K G
Sbjct: 254 SRSLSLLVSLLFAHNTQ*RPATMTTAPITPPM*SLSPRKIEAMIATITVCNGWKTETK*G 75
Query: 535 PPLSMHQICRANATPDATRPAYRM 606
PPL MH + A P T PAY+M
Sbjct: 74 PPLFMHHVIIYQAIPSTTIPAYKM 3
Score = 104 bits (222), Expect = 1e-021
Identities = 44/88 (50%), Positives = 57/88 (64%)
Frame = -3 / +1
Query: 608 TILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXX 429
TILYAG+V G+A+ + WCI++GGP F +VFQP+QTV VA+MAS LGD+LY
Sbjct: 1 TILYAGIVVLGIAWYIMTWCINKGGPHFVSVFQPLQTVMVAIMASIFLGDKLYIGGVIGA 180
Query: 428 XXXXXXLYFVLWGKSAEKKGARNLLQDQ 345
LY VLW KS E K +LL ++
Sbjct: 181 VVIVAGLYCVLWAKSKETKSDSDLLSER 264
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 822,799,518
Number of Sequences: 832831
Number of extensions: 12127628
Number of successful extensions: 158417
Number of sequences better than 1.0e-020: 13
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)