TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sor... 187 2e-046
gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sor... 187 2e-046
gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sor... 187 2e-046
gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sor... 182 6e-045
gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorgh... 162 9e-040
gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum m... 162 1e-039
gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum m... 162 1e-039
gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum m... 162 5e-039
gb|CW106766.1|CW106766 104_476_11096171_148_34462_038 Sorgh... 121 3e-038
gb|CW463869.1|CW463869 fsbb001f212m15k0 Sorghum methylation... 121 4e-038
gb|CW036653.1|CW036653 104_268_10503895_115_30382 Sorghum m... 118 8e-028
gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adap... 117 2e-025
gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorgh... 117 2e-025
gb|CW375671.1|CW375671 fsbb001f053c11k0 Sorghum methylation... 117 2e-025
gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1... 102 5e-021
gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum b... 102 5e-021
gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bi... 102 5e-021
gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bi... 102 5e-021
gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum b... 102 5e-021
gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum b... 102 5e-021
gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorgh... 102 6e-021
gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum b... 102 6e-021
gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum b... 102 6e-021
>gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 187 bits (402), Expect(2) = 2e-046
Identities = 66/73 (90%), Positives = 72/73 (98%)
Frame = -1 / +1
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQAEAIDCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 184 TTAPHGQAEAIDCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 363
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*+
Sbjct: 364 MTTHNGKHKCP*T 402
Score = 162 bits (348), Expect(2) = 4e-040
Identities = 63/69 (91%), Positives = 63/69 (91%)
Frame = +1 / -1
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 398 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 219
Query: 460 SMASACPWG 486
SMASACPWG
Sbjct: 218 SMASACPWG 192
Score = 24.0 bits (46), Expect(2) = 4e-040
Identities = 5/6 (83%), Positives = 6/6 (100%)
Frame = +2 / -1
Query: 557 WPWWKV 574
WPWWK+
Sbjct: 119 WPWWKL 102
Score = 21.7 bits (41), Expect(2) = 2e-046
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2 / +3
Query: 586 RQEANLPPWP 557
R+ LPPWP
Sbjct: 90 REAEKLPPWP 119
>gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 187 bits (402), Expect(2) = 2e-046
Identities = 66/73 (90%), Positives = 72/73 (98%)
Frame = -1 / +3
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQAEAIDCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 174 TTAPHGQAEAIDCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 353
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*+
Sbjct: 354 MTTHNGKHKCP*T 392
Score = 162 bits (348), Expect(2) = 4e-040
Identities = 63/69 (91%), Positives = 63/69 (91%)
Frame = +1 / -2
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 388 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 209
Query: 460 SMASACPWG 486
SMASACPWG
Sbjct: 208 SMASACPWG 182
Score = 24.0 bits (46), Expect(2) = 4e-040
Identities = 5/6 (83%), Positives = 6/6 (100%)
Frame = +2 / -3
Query: 557 WPWWKV 574
WPWWK+
Sbjct: 108 WPWWKL 91
Score = 21.7 bits (41), Expect(2) = 2e-046
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -2 / +1
Query: 586 RQEANLPPWP 557
R+ LPPWP
Sbjct: 79 REAEKLPPWP 108
>gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 187 bits (402), Expect = 2e-046
Identities = 66/73 (90%), Positives = 72/73 (98%)
Frame = -1 / +3
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQAEAIDCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYAN
Sbjct: 81 TTAPHGQAEAIDCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYAN 260
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*+
Sbjct: 261 MTTHNGKHKCP*T 299
Score = 162 bits (348), Expect(2) = 5e-040
Identities = 63/69 (91%), Positives = 63/69 (91%)
Frame = +1 / -3
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 295 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 116
Query: 460 SMASACPWG 486
SMASACPWG
Sbjct: 115 SMASACPWG 89
Score = 23.5 bits (45), Expect(2) = 5e-040
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +2 / -3
Query: 557 WPWWK 571
WPWWK
Sbjct: 16 WPWWK 2
>gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 182 bits (391), Expect = 6e-045
Identities = 65/73 (89%), Positives = 71/73 (97%)
Frame = -1 / +3
Query: 494 TTSPHGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYAN 315
TT+PHGQAEAIDCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCP YAN
Sbjct: 3 TTAPHGQAEAIDCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPXYAN 182
Query: 314 MKTHDGQHKCP*S 276
M TH+G+HKCP*+
Sbjct: 183 MTTHNGKHKCP*T 221
Score = 160 bits (343), Expect = 3e-038
Identities = 62/69 (89%), Positives = 62/69 (89%)
Frame = +1 / -2
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 217 HGHLCLPLWVVMLAXQGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 38
Query: 460 SMASACPWG 486
SMASACPWG
Sbjct: 37 SMASACPWG 11
>gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207539, DNA
sequence
Length = 675
Score = 162 bits (348), Expect(2) = 9e-040
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = -1 / -2
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP 282
DCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKCP
Sbjct: 407 DCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGKHKCP 228
Query: 281 *S 276
*+
Sbjct: 227 *T 222
Score = 139 bits (298), Expect(2) = 2e-033
Identities = 55/61 (90%), Positives = 55/61 (90%)
Frame = +1 / +1
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 226 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 405
Query: 460 S 462
S
Sbjct: 406 S 408
Score = 25.8 bits (50), Expect(2) = 2e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +3
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 552 MASACPWG 575
Score = 24.4 bits (47), Expect(2) = 9e-040
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / -2
Query: 486 SPWTG*SHR 460
SPWTG* HR
Sbjct: 575 SPWTG*GHR 549
>gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499668, DNA
sequence
Length = 684
Score = 162 bits (348), Expect(2) = 1e-039
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = -1 / +3
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP 282
DCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKCP
Sbjct: 288 DCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGKHKCP 467
Query: 281 *S 276
*+
Sbjct: 468 *T 473
Score = 139 bits (298), Expect(2) = 3e-033
Identities = 55/61 (90%), Positives = 55/61 (90%)
Frame = +1 / -3
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 469 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 290
Query: 460 S 462
S
Sbjct: 289 S 287
Score = 25.8 bits (50), Expect(2) = 3e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -2
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 143 MASACPWG 120
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 486 SPWTG*SHR 460
SPWTG* HR
Sbjct: 120 SPWTG*GHR 146
>gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499765, DNA
sequence
Length = 839
Score = 162 bits (348), Expect(2) = 1e-039
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = -1 / +3
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP 282
DCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKCP
Sbjct: 387 DCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGKHKCP 566
Query: 281 *S 276
*+
Sbjct: 567 *T 572
Score = 139 bits (298), Expect(2) = 3e-033
Identities = 55/61 (90%), Positives = 55/61 (90%)
Frame = +1 / -2
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 568 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 389
Query: 460 S 462
S
Sbjct: 388 S 386
Score = 25.8 bits (50), Expect(2) = 3e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / -1
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 242 MASACPWG 219
Score = 24.4 bits (47), Expect(2) = 1e-039
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3 / +3
Query: 486 SPWTG*SHR 460
SPWTG* HR
Sbjct: 219 SPWTG*GHR 245
>gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509471, DNA
sequence
Length = 648
Score = 162 bits (348), Expect = 5e-039
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = -1 / -1
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP 282
DCGASC+YRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNE+VCPCYANM TH+G+HKCP
Sbjct: 567 DCGASCAYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNENVCPCYANMTTHNGKHKCP 388
Query: 281 *S 276
*+
Sbjct: 387 *T 382
Score = 139 bits (298), Expect(2) = 2e-032
Identities = 55/61 (90%), Positives = 55/61 (90%)
Frame = +1 / +2
Query: 280 HGHLCWPSWVFMLA*QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQ 459
HGHLC P WV MLA*QGQT SLPEVPGGTQPQRWQQVPHA RHILGRPDLLHRY QLAPQ
Sbjct: 386 HGHLCLPLWVVMLA*QGQTFSLPEVPGGTQPQRWQQVPHARRHILGRPDLLHRYAQLAPQ 565
Query: 460 S 462
S
Sbjct: 566 S 568
Score = 23.1 bits (44), Expect(2) = 2e-032
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2 / +1
Query: 68 YCIS*RQPAKHHIYTII*YVHLFIHACTRTI 160
+C+ P H +T I LFIH R I
Sbjct: 76 HCVGAESPKHHIPHTSIVLYLLFIHVRVRMI 168
>gb|CW106766.1|CW106766 104_476_11096171_148_34462_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096171, DNA
sequence
Length = 539
Score = 121 bits (259), Expect(3) = 3e-038
Identities = 43/46 (93%), Positives = 43/46 (93%)
Frame = -1 / -2
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPC 324
DCGASCSYRCS SGRPKMCLRACGTCCQRCGCVPPGTSGNEDV C
Sbjct: 277 DCGASCSYRCSNSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVVVC 140
Score = 109 bits (232), Expect(3) = 8e-033
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = +1 / +3
Query: 325 QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQS 462
Q TSSLPEVPGGTQPQRWQQVPHALRHILGRP+LLHRYEQLAPQS
Sbjct: 141 QTTTSSLPEVPGGTQPQRWQQVPHALRHILGRPELLHRYEQLAPQS 278
Score = 51.9 bits (107), Expect(3) = 3e-038
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -1 / -2
Query: 335 VCPCYANMKTHDGQHKCP*S 276
VCPCYANM THDG+HKCP*+
Sbjct: 145 VCPCYANMTTHDGKHKCP*T 86
Score = 46.4 bits (95), Expect(3) = 8e-033
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1 / +3
Query: 280 HGHLCWPSWVFMLA*QGQTSS 342
HGHLC PSWV MLA*QGQT++
Sbjct: 90 HGHLCLPSWVVMLA*QGQTTT 152
Score = 26.3 bits (51), Expect(3) = 3e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -1 / -3
Query: 494 TTSPHGQAEAI 462
TT+PHGQA+AI
Sbjct: 459 TTAPHGQADAI 427
Score = 25.8 bits (50), Expect(3) = 8e-033
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +2
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 428 MASACPWG 451
>gb|CW463869.1|CW463869 fsbb001f212m15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f212m15, DNA
sequence
Length = 598
Score = 121 bits (259), Expect(3) = 4e-038
Identities = 43/46 (93%), Positives = 43/46 (93%)
Frame = -1 / -1
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPC 324
DCGASCSYRCS SGRPKMCLRACGTCCQRCGCVPPGTSGNEDV C
Sbjct: 397 DCGASCSYRCSNSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVVVC 260
Score = 109 bits (232), Expect(3) = 1e-032
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = +1 / +3
Query: 325 QGQTSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQS 462
Q TSSLPEVPGGTQPQRWQQVPHALRHILGRP+LLHRYEQLAPQS
Sbjct: 261 QTTTSSLPEVPGGTQPQRWQQVPHALRHILGRPELLHRYEQLAPQS 398
Score = 51.9 bits (107), Expect(3) = 4e-038
Identities = 17/20 (85%), Positives = 19/20 (95%)
Frame = -1 / -1
Query: 335 VCPCYANMKTHDGQHKCP*S 276
VCPCYANM THDG+HKCP*+
Sbjct: 265 VCPCYANMTTHDGKHKCP*T 206
Score = 46.4 bits (95), Expect(3) = 1e-032
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1 / +3
Query: 280 HGHLCWPSWVFMLA*QGQTSS 342
HGHLC PSWV MLA*QGQT++
Sbjct: 210 HGHLCLPSWVVMLA*QGQTTT 272
Score = 26.3 bits (51), Expect(3) = 4e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -1 / -2
Query: 494 TTSPHGQAEAI 462
TT+PHGQA+AI
Sbjct: 579 TTAPHGQADAI 547
Score = 25.8 bits (50), Expect(3) = 1e-032
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +2
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 548 MASACPWG 571
>gb|CW036653.1|CW036653 104_268_10503895_115_30382 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503895, DNA
sequence
Length = 588
Score = 118 bits (253), Expect(2) = 2e-027
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = -1 / -1
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDV 333
DCGASCSYRCS SGRPKMCLRACGTCCQRCGCVPPGTSGNEDV
Sbjct: 135 DCGASCSYRCSNSGRPKMCLRACGTCCQRCGCVPPGTSGNEDV 7
Score = 108 bits (230), Expect(4) = 8e-028
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1 / +2
Query: 334 TSSLPEVPGGTQPQRWQQVPHALRHILGRPDLLHRYEQLAPQS 462
TSSLPEVPGGTQPQRWQQVPHALRHILGRP+LLHRYEQLAPQS
Sbjct: 8 TSSLPEVPGGTQPQRWQQVPHALRHILGRPELLHRYEQLAPQS 136
Score = 26.3 bits (51), Expect(2) = 2e-027
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -1 / -2
Query: 494 TTSPHGQAEAI 462
TT+PHGQA+AI
Sbjct: 317 TTAPHGQADAI 285
Score = 25.8 bits (50), Expect(4) = 8e-028
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1 / +1
Query: 463 MASACPWG 486
MASACPWG
Sbjct: 286 MASACPWG 309
Score = 24.0 bits (46), Expect(4) = 8e-028
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +2 / +2
Query: 548 CSPWPWWKVGFL 583
C P PWW FL
Sbjct: 494 CWP*PWWNQAFL 529
Score = 23.5 bits (45), Expect(4) = 8e-028
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1 / +1
Query: 583 ACLIPCTREARDRHGPVV 636
+CL+ CTRE R VV
Sbjct: 526 SCLLRCTRETRMTDSTVV 579
>gb|BZ366922.1|BZ366922 id01c02.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id01c02 5', DNA sequence
Length = 521
Score = 117 bits (250), Expect = 2e-025
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -1 / +3
Query: 476 QAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDG 297
+ A DCG++C+ RC+ S R K+C RACG+CC RC CVPPGT+GN DVCPCYA + T
Sbjct: 36 RTSAADCGSACAARCALSSRQKLCRRACGSCCARCNCVPPGTAGNHDVCPCYAAITTRGA 215
Query: 296 QHKCP*S 276
+ KCP*S
Sbjct: 216 RPKCP*S 236
>gb|CW132001.1|CW132001 104_515_11115977_148_34794_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11115977, DNA
sequence
Length = 611
Score = 117 bits (250), Expect = 2e-025
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -1 / -2
Query: 476 QAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDG 297
+ A DCG++C+ RC+ S R K+C RACG+CC RC CVPPGT+GN DVCPCYA + T
Sbjct: 427 RTSAADCGSACAARCALSSRQKLCRRACGSCCARCNCVPPGTAGNHDVCPCYAAITTRGA 248
Query: 296 QHKCP*S 276
+ KCP*S
Sbjct: 247 RPKCP*S 227
>gb|CW375671.1|CW375671 fsbb001f053c11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053c11, DNA
sequence
Length = 534
Score = 117 bits (250), Expect = 2e-025
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -1 / +1
Query: 476 QAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDG 297
+ A DCG++C+ RC+ S R K+C RACG+CC RC CVPPGT+GN DVCPCYA + T
Sbjct: 283 RTSAADCGSACAARCALSSRQKLCRRACGSCCARCNCVPPGTAGNHDVCPCYAAITTRGA 462
Query: 296 QHKCP*S 276
+ KCP*S
Sbjct: 463 RPKCP*S 483
>gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 599
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +3
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 195 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 374
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 375 GGPKCP*CMH 404
>gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E06_A002 5', mRNA sequence
Length = 628
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +3
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 294 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 473
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 474 GGPKCP*CMH 503
>gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 3', mRNA sequence
Length = 576
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +2
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 161 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 340
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 341 GGPKCP*CMH 370
>gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 5', mRNA sequence
Length = 626
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +1
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 292 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 471
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 472 GGPKCP*CMH 501
>gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 5', mRNA sequence
Length = 521
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / -1
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 443 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 264
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 263 GGPKCP*CMH 234
>gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B10_A002 5', mRNA sequence
Length = 713
Score = 102 bits (218), Expect = 5e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +1
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 289 GNLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 468
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 469 GGPKCP*CMH 498
>gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096662, DNA
sequence
Length = 551
Score = 102 bits (217), Expect = 6e-021
Identities = 36/64 (56%), Positives = 41/64 (64%)
Frame = -1 / -2
Query: 461 DCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP 282
+CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT G KCP
Sbjct: 310 ECGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKRGGPKCP 131
Query: 281 *SIH 270
* +H
Sbjct: 130 *CMH 119
>gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_A09_A002 5', mRNA sequence
Length = 490
Score = 102 bits (217), Expect = 6e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / -3
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 443 GTLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 264
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 263 GGPKCP*CMH 234
>gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_H04_A002 3', mRNA sequence
Length = 561
Score = 102 bits (217), Expect = 6e-021
Identities = 37/70 (52%), Positives = 42/70 (60%)
Frame = -1 / +2
Query: 479 GQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHD 300
G + CG C RCSK+ K CL C CC +C CVPPGT GN+D CPCY N KT
Sbjct: 146 GTLKPSQCGGECKRRCSKTHHKKPCLFFCNKCCAKCLCVPPGTYGNKDTCPCYNNWKTKR 325
Query: 299 GQHKCP*SIH 270
G KCP* +H
Sbjct: 326 GGPKCP*CMH 355
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 761,537,213
Number of Sequences: 832831
Number of extensions: 10729128
Number of successful extensions: 118172
Number of sequences better than 1.0e-020: 25
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20554766986
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)