TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440444.2.1
(237 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorgh... 166 8e-041
gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation... 166 8e-041
gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation... 166 8e-041
gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation... 145 1e-034
gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1... 145 1e-034
gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1... 145 1e-034
gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorgh... 140 3e-033
gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum b... 140 3e-033
gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassino... 140 3e-033
gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation... 136 5e-032
gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Me... 100 9e-026
gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2... 100 9e-026
gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation... 100 1e-025
gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stres... 100 1e-025
gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorgh... 100 1e-025
gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stres... 100 2e-025
gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation... 95 3e-024
gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorgh... 108 1e-023
gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1... 94 5e-022
gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2... 68 1e-021
>gb|CL185114.1|CL185114 104_398_10899301_116_32372_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899301, DNA
sequence
Length = 679
Score = 166 bits (356), Expect = 8e-041
Identities = 67/78 (85%), Positives = 69/78 (88%)
Frame = -3 / -2
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHS LMFLRWPNT GRPASQLIGF SQHLKAGETA LRFDISPC+HFSRVRADG KVID
Sbjct: 585 KHSALMFLRWPNTNGGRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVID 406
Query: 55 IGSHFFMVDNHEMEIRFE 2
IGSHF VDNH +EIRFE
Sbjct: 405 IGSHFLTVDNHAIEIRFE 352
Score = 163 bits (351), Expect = 4e-040
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +3 / +2
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
SNLISI+WLST++K*DPISITF+PSALTL KC HGLMSNL LAVSPALRCWL+NPISWLA
Sbjct: 353 SNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNPISWLA 532
Query: 183 GRPCFVFGQRRNMSTECF 236
GRP FVFG RRN+S ECF
Sbjct: 533 GRPPFVFGHRRNISAECF 586
Score = 148 bits (318), Expect = 1e-035
Identities = 61/78 (78%), Positives = 63/78 (80%)
Frame = +2 / +1
Query: 2 LKPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLAC 181
LKPNL MVVN EEMRPNIDHL AIRPHP EMLTR DVK E+ RLPCLEMLA EPNQLAC
Sbjct: 352 LKPNLDCMVVNREEMRPNIDHLHAIRPHPAEMLTRTDVKSEVGRLPCLEMLAHEPNQLAC 531
Query: 182 RATLFRVWPAEEHEHRVL 235
A RVWP EEH+ RVL
Sbjct: 532 WAASIRVWPPEEHQRRVL 585
Score = 147 bits (316), Expect = 2e-035
Identities = 62/78 (79%), Positives = 65/78 (83%)
Frame = -2 / -1
Query: 236 EALGAHVPPLAKHETRSPGKPADWVQEPASQGRGDG*AQV*HQPV*AFLQGEGGWQEGDR 57
EALGA VPP+AKHE R P KPADWV EPASQGRGDG Q+*HQ V*AF QGEGGW EGDR
Sbjct: 586 EALGADVPPVAKHEWRPPSKPADWVHEPASQGRGDGQPQI*HQSV*AFQQGEGGWHEGDR 407
Query: 56 YWVSFLHG*QP*DGD*V* 3
YWVSF HG*QP + D*V*
Sbjct: 406 YWVSFPHG*QPCNRD*V* 353
Score = 138 bits (296), Expect = 1e-032
Identities = 63/78 (80%), Positives = 65/78 (83%)
Frame = +1 / +3
Query: 4 QT*SPSHGCQP*RNETQYRSPSCHPPSPWRNAYTG*CQT*A*PSPLP*DAGS*TQSAGLP 183
QT*S HGCQP* NETQYRSPSCHPPSP NA+T *CQ * PSPLP*DAGS*TQSAGL
Sbjct: 354 QT*SRLHGCQP*GNETQYRSPSCHPPSPC*NAHTD*CQI*GWPSPLP*DAGS*TQSAGLL 533
Query: 184 GDLVSCLASGGT*APSAS 237
G L SCLA+GGT APSAS
Sbjct: 534 GGLHSCLATGGTSAPSAS 587
Score = 117 bits (251), Expect = 2e-026
Identities = 61/78 (78%), Positives = 65/78 (83%)
Frame = -1 / -3
Query: 237 GSTRCSCSSAGQTRNKVARQAS*LGSGASISRQGRRLSSGLTSARVSISPG*GRMAGR*S 58
GSTR CSS GQTR + A+QAS*LGS ASISRQGRR +S LTS RVSIS G*GRMA R*S
Sbjct: 587 GSTRR*CSSGGQTRMEAAQQAS*LGS*ASISRQGRRPTSDLTSVRVSISAG*GRMA*R*S 408
Query: 57 ILGLISSWLTTMRWRLGL 4
ILGLISS LTTM+ RLGL
Sbjct: 407 ILGLISSRLTTMQSRLGL 354
>gb|CW364257.1|CW364257 fsbb001f036d15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f036d15, DNA
sequence
Length = 713
Score = 166 bits (356), Expect = 8e-041
Identities = 67/78 (85%), Positives = 69/78 (88%)
Frame = -3 / -3
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHS LMFLRWPNT GRPASQLIGF SQHLKAGETA LRFDISPC+HFSRVRADG KVID
Sbjct: 546 KHSALMFLRWPNTNGGRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVID 367
Query: 55 IGSHFFMVDNHEMEIRFE 2
IGSHF VDNH +EIRFE
Sbjct: 366 IGSHFLTVDNHAIEIRFE 313
Score = 163 bits (351), Expect = 4e-040
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +3 / +2
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
SNLISI+WLST++K*DPISITF+PSALTL KC HGLMSNL LAVSPALRCWL+NPISWLA
Sbjct: 314 SNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNPISWLA 493
Query: 183 GRPCFVFGQRRNMSTECF 236
GRP FVFG RRN+S ECF
Sbjct: 494 GRPPFVFGHRRNISAECF 547
Score = 148 bits (318), Expect = 1e-035
Identities = 61/78 (78%), Positives = 63/78 (80%)
Frame = +2 / +1
Query: 2 LKPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLAC 181
LKPNL MVVN EEMRPNIDHL AIRPHP EMLTR DVK E+ RLPCLEMLA EPNQLAC
Sbjct: 313 LKPNLDCMVVNREEMRPNIDHLHAIRPHPAEMLTRTDVKSEVGRLPCLEMLAHEPNQLAC 492
Query: 182 RATLFRVWPAEEHEHRVL 235
A RVWP EEH+ RVL
Sbjct: 493 WAASIRVWPPEEHQRRVL 546
Score = 147 bits (316), Expect = 2e-035
Identities = 62/78 (79%), Positives = 65/78 (83%)
Frame = -2 / -2
Query: 236 EALGAHVPPLAKHETRSPGKPADWVQEPASQGRGDG*AQV*HQPV*AFLQGEGGWQEGDR 57
EALGA VPP+AKHE R P KPADWV EPASQGRGDG Q+*HQ V*AF QGEGGW EGDR
Sbjct: 547 EALGADVPPVAKHEWRPPSKPADWVHEPASQGRGDGQPQI*HQSV*AFQQGEGGWHEGDR 368
Query: 56 YWVSFLHG*QP*DGD*V* 3
YWVSF HG*QP + D*V*
Sbjct: 367 YWVSFPHG*QPCNRD*V* 314
Score = 138 bits (296), Expect = 1e-032
Identities = 63/78 (80%), Positives = 65/78 (83%)
Frame = +1 / +3
Query: 4 QT*SPSHGCQP*RNETQYRSPSCHPPSPWRNAYTG*CQT*A*PSPLP*DAGS*TQSAGLP 183
QT*S HGCQP* NETQYRSPSCHPPSP NA+T *CQ * PSPLP*DAGS*TQSAGL
Sbjct: 315 QT*SRLHGCQP*GNETQYRSPSCHPPSPC*NAHTD*CQI*GWPSPLP*DAGS*TQSAGLL 494
Query: 184 GDLVSCLASGGT*APSAS 237
G L SCLA+GGT APSAS
Sbjct: 495 GGLHSCLATGGTSAPSAS 548
Score = 117 bits (251), Expect = 2e-026
Identities = 61/78 (78%), Positives = 65/78 (83%)
Frame = -1 / -1
Query: 237 GSTRCSCSSAGQTRNKVARQAS*LGSGASISRQGRRLSSGLTSARVSISPG*GRMAGR*S 58
GSTR CSS GQTR + A+QAS*LGS ASISRQGRR +S LTS RVSIS G*GRMA R*S
Sbjct: 548 GSTRR*CSSGGQTRMEAAQQAS*LGS*ASISRQGRRPTSDLTSVRVSISAG*GRMA*R*S 369
Query: 57 ILGLISSWLTTMRWRLGL 4
ILGLISS LTTM+ RLGL
Sbjct: 368 ILGLISSRLTTMQSRLGL 315
>gb|CW476771.1|CW476771 fsbb001f233m10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233m10, DNA
sequence
Length = 561
Score = 166 bits (356), Expect = 8e-041
Identities = 67/78 (85%), Positives = 69/78 (88%)
Frame = -3 / -3
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHS LMFLRWPNT GRPASQLIGF SQHLKAGETA LRFDISPC+HFSRVRADG KVID
Sbjct: 394 KHSALMFLRWPNTNGGRPASQLIGFMSQHLKAGETANLRFDISPCEHFSRVRADGMKVID 215
Query: 55 IGSHFFMVDNHEMEIRFE 2
IGSHF VDNH +EIRFE
Sbjct: 214 IGSHFLTVDNHAIEIRFE 161
Score = 163 bits (351), Expect = 4e-040
Identities = 66/78 (84%), Positives = 72/78 (92%)
Frame = +3 / +3
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
SNLISI+WLST++K*DPISITF+PSALTL KC HGLMSNL LAVSPALRCWL+NPISWLA
Sbjct: 162 SNLISIAWLSTVRK*DPISITFMPSALTLLKCSHGLMSNLRLAVSPALRCWLMNPISWLA 341
Query: 183 GRPCFVFGQRRNMSTECF 236
GRP FVFG RRN+S ECF
Sbjct: 342 GRPPFVFGHRRNISAECF 395
Score = 148 bits (318), Expect = 1e-035
Identities = 61/78 (78%), Positives = 63/78 (80%)
Frame = +2 / +2
Query: 2 LKPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLAC 181
LKPNL MVVN EEMRPNIDHL AIRPHP EMLTR DVK E+ RLPCLEMLA EPNQLAC
Sbjct: 161 LKPNLDCMVVNREEMRPNIDHLHAIRPHPAEMLTRTDVKSEVGRLPCLEMLAHEPNQLAC 340
Query: 182 RATLFRVWPAEEHEHRVL 235
A RVWP EEH+ RVL
Sbjct: 341 WAASIRVWPPEEHQRRVL 394
Score = 147 bits (316), Expect = 2e-035
Identities = 62/78 (79%), Positives = 65/78 (83%)
Frame = -2 / -2
Query: 236 EALGAHVPPLAKHETRSPGKPADWVQEPASQGRGDG*AQV*HQPV*AFLQGEGGWQEGDR 57
EALGA VPP+AKHE R P KPADWV EPASQGRGDG Q+*HQ V*AF QGEGGW EGDR
Sbjct: 395 EALGADVPPVAKHEWRPPSKPADWVHEPASQGRGDGQPQI*HQSV*AFQQGEGGWHEGDR 216
Query: 56 YWVSFLHG*QP*DGD*V* 3
YWVSF HG*QP + D*V*
Sbjct: 215 YWVSFPHG*QPCNRD*V* 162
Score = 138 bits (296), Expect = 1e-032
Identities = 63/78 (80%), Positives = 65/78 (83%)
Frame = +1 / +1
Query: 4 QT*SPSHGCQP*RNETQYRSPSCHPPSPWRNAYTG*CQT*A*PSPLP*DAGS*TQSAGLP 183
QT*S HGCQP* NETQYRSPSCHPPSP NA+T *CQ * PSPLP*DAGS*TQSAGL
Sbjct: 163 QT*SRLHGCQP*GNETQYRSPSCHPPSPC*NAHTD*CQI*GWPSPLP*DAGS*TQSAGLL 342
Query: 184 GDLVSCLASGGT*APSAS 237
G L SCLA+GGT APSAS
Sbjct: 343 GGLHSCLATGGTSAPSAS 396
Score = 117 bits (251), Expect = 2e-026
Identities = 61/78 (78%), Positives = 65/78 (83%)
Frame = -1 / -1
Query: 237 GSTRCSCSSAGQTRNKVARQAS*LGSGASISRQGRRLSSGLTSARVSISPG*GRMAGR*S 58
GSTR CSS GQTR + A+QAS*LGS ASISRQGRR +S LTS RVSIS G*GRMA R*S
Sbjct: 396 GSTRR*CSSGGQTRMEAAQQAS*LGS*ASISRQGRRPTSDLTSVRVSISAG*GRMA*R*S 217
Query: 57 ILGLISSWLTTMRWRLGL 4
ILGLISS LTTM+ RLGL
Sbjct: 216 ILGLISSRLTTMQSRLGL 163
>gb|CW404456.1|CW404456 fsbb001f096j16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f096j16, DNA
sequence
Length = 728
Score = 145 bits (311), Expect = 1e-034
Identities = 56/78 (71%), Positives = 63/78 (80%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHSVLMFLRWPN GRP SQLIGF SQH+KAGE A +RFD+ PC+HFSR RADG+KVID
Sbjct: 222 KHSVLMFLRWPNATDGRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVID 401
Query: 55 IGSHFFMVDNHEMEIRFE 2
GSHF MV E+E+ FE
Sbjct: 402 RGSHFLMVGKEEVEVSFE 455
Score = 128 bits (275), Expect = 1e-029
Identities = 54/77 (70%), Positives = 58/77 (75%)
Frame = +3 / -2
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
S L S S L TM+K*DP+SITFLPSAL KC HGL SNL+LA SPAL CWL+NPISWL
Sbjct: 454 SKLTSTSSLPTMRK*DPLSITFLPSALARLKCSHGLTSNLTLAFSPALMCWLVNPISWLT 275
Query: 183 GRPCFVFGQRRNMSTEC 233
GRP G RRNM TEC
Sbjct: 274 GRPSVALGHRRNMRTEC 224
Score = 109 bits (233), Expect = 7e-024
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = +2 / -1
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K +LHL + +HEEMRP++DHL A+RP P E+ R D+KP++ LPCL++LA EP+QLA R
Sbjct: 452 KADLHLFLADHEEMRPSVDHLLAVRPRPAEVFARPDIKPDVGLLPCLDVLAREPDQLAHR 273
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + P EEHE RVL
Sbjct: 272 PAIRCIGPPEEHEDRVL 222
>gb|AW922366.1|AW922366 DG1_18_D08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 488
Score = 145 bits (311), Expect = 1e-034
Identities = 56/78 (71%), Positives = 63/78 (80%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHSVLMFLRWPN GRP SQLIGF SQH+KAGE A +RFD+ PC+HFSR RADG+KVID
Sbjct: 30 KHSVLMFLRWPNATDGRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVID 209
Query: 55 IGSHFFMVDNHEMEIRFE 2
GSHF MV E+E+ FE
Sbjct: 210 RGSHFLMVGKEEVEVSFE 263
Score = 128 bits (275), Expect = 1e-029
Identities = 54/77 (70%), Positives = 58/77 (75%)
Frame = +3 / -2
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
S L S S L TM+K*DP+SITFLPSAL KC HGL SNL+LA SPAL CWL+NPISWL
Sbjct: 262 SKLTSTSSLPTMRK*DPLSITFLPSALARLKCSHGLTSNLTLAFSPALMCWLVNPISWLT 83
Query: 183 GRPCFVFGQRRNMSTEC 233
GRP G RRNM TEC
Sbjct: 82 GRPSVALGHRRNMRTEC 32
Score = 109 bits (233), Expect = 7e-024
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = +2 / -1
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K +LHL + +HEEMRP++DHL A+RP P E+ R D+KP++ LPCL++LA EP+QLA R
Sbjct: 260 KADLHLFLADHEEMRPSVDHLLAVRPRPAEVFARPDIKPDVGLLPCLDVLAREPDQLAHR 81
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + P EEHE RVL
Sbjct: 80 PAIRCIGPPEEHEDRVL 30
>gb|BE358348.1|BE358348 DG1_29_F09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 602
Score = 145 bits (311), Expect = 1e-034
Identities = 56/78 (71%), Positives = 63/78 (80%)
Frame = -3 / -1
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHSVLMFLRWPN GRP SQLIGF SQH+KAGE A +RFD+ PC+HFSR RADG+KVID
Sbjct: 494 KHSVLMFLRWPNATDGRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARADGKKVID 315
Query: 55 IGSHFFMVDNHEMEIRFE 2
GSHF MV E+E+ FE
Sbjct: 314 RGSHFLMVGKEEVEVSFE 261
Score = 128 bits (275), Expect = 1e-029
Identities = 54/77 (70%), Positives = 58/77 (75%)
Frame = +3 / +1
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
S L S S L TM+K*DP+SITFLPSAL KC HGL SNL+LA SPAL CWL+NPISWL
Sbjct: 262 SKLTSTSSLPTMRK*DPLSITFLPSALARLKCSHGLTSNLTLAFSPALMCWLVNPISWLT 441
Query: 183 GRPCFVFGQRRNMSTEC 233
GRP G RRNM TEC
Sbjct: 442 GRPSVALGHRRNMRTEC 492
Score = 109 bits (233), Expect = 7e-024
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = +2 / +3
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K +LHL + +HEEMRP++DHL A+RP P E+ R D+KP++ LPCL++LA EP+QLA R
Sbjct: 264 KADLHLFLADHEEMRPSVDHLLAVRPRPAEVFARPDIKPDVGLLPCLDVLAREPDQLAHR 443
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + P EEHE RVL
Sbjct: 444 PAIRCIGPPEEHEDRVL 494
>gb|CW345632.1|CW345632 104_848_11488598_116_36212_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488598, DNA
sequence
Length = 676
Score = 140 bits (301), Expect = 3e-033
Identities = 54/77 (70%), Positives = 62/77 (80%)
Frame = -3 / -2
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KH+ LMFLRWP+ GRP QLIGF+SQH+KAGE A LRF++SPC+HFSRVR DGRKVID
Sbjct: 333 KHTALMFLRWPSATDGRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVID 154
Query: 55 IGSHFFMVDNHEMEIRF 5
GSHF V HE+EI F
Sbjct: 153 KGSHFLKVGKHELEISF 103
Score = 118 bits (252), Expect = 2e-026
Identities = 51/76 (67%), Positives = 54/76 (71%)
Frame = +3 / +2
Query: 9 LISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLAGR 188
LIS S L T++K DP+SITFLPS LTL KC HGL SNL A SPAL CWL NPIS L GR
Sbjct: 107 LISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPISCLVGR 286
Query: 189 PCFVFGQRRNMSTECF 236
P G RRNMS CF
Sbjct: 287 PSVALGHRRNMSAVCF 334
Score = 104 bits (221), Expect = 3e-022
Identities = 45/77 (58%), Positives = 55/77 (71%)
Frame = +2 / +1
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K NL LM+ N EEM P IDHL A+ PHP EMLTRA +KP++ LPCL++LA EP+QL
Sbjct: 103 KTNLQLMLANLEEM*PFIDHLSAVLPHPAEMLTRAHLKPQVRLLPCLDVLALEPDQLPRW 282
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + R P EEHE RVL
Sbjct: 283 SAVGRAGPPEEHERRVL 333
>gb|CF485676.1|CF485676 POL1_33_A02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_A02_A002 3', mRNA sequence
Length = 529
Score = 140 bits (301), Expect = 3e-033
Identities = 54/77 (70%), Positives = 62/77 (80%)
Frame = -3 / +1
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KH+ LMFLRWP+ GRP QLIGF+SQH+KAGE A LRF++SPC+HFSRVR DGRKVID
Sbjct: 178 KHTALMFLRWPSATDGRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVID 357
Query: 55 IGSHFFMVDNHEMEIRF 5
GSHF V HE+EI F
Sbjct: 358 KGSHFLKVGKHELEISF 408
Score = 118 bits (252), Expect = 2e-026
Identities = 51/76 (67%), Positives = 54/76 (71%)
Frame = +3 / -3
Query: 9 LISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLAGR 188
LIS S L T++K DP+SITFLPS LTL KC HGL SNL A SPAL CWL NPIS L GR
Sbjct: 404 LISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPISCLVGR 225
Query: 189 PCFVFGQRRNMSTECF 236
P G RRNMS CF
Sbjct: 224 PSVALGHRRNMSAVCF 177
Score = 104 bits (221), Expect = 3e-022
Identities = 45/77 (58%), Positives = 55/77 (71%)
Frame = +2 / -2
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K NL LM+ N EEM P IDHL A+ PHP EMLTRA +KP++ LPCL++LA EP+QL
Sbjct: 408 KTNLQLMLANLEEM*PFIDHLSAVLPHPAEMLTRAHLKPQVRLLPCLDVLALEPDQLPRW 229
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + R P EEHE RVL
Sbjct: 228 SAVGRAGPPEEHERRVL 178
>gb|CX614140.1|CX614140 GABR1_12_G05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_G05_A002 3', mRNA sequence
Length = 677
Score = 140 bits (301), Expect = 3e-033
Identities = 54/77 (70%), Positives = 62/77 (80%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KH+ LMFLRWP+ GRP QLIGF+SQH+KAGE A LRF++SPC+HFSRVR DGRKVID
Sbjct: 357 KHTALMFLRWPSATDGRPTRQLIGFQSQHIKAGEKANLRFEVSPCEHFSRVRQDGRKVID 536
Query: 55 IGSHFFMVDNHEMEIRF 5
GSHF V HE+EI F
Sbjct: 537 KGSHFLKVGKHELEISF 587
Score = 118 bits (252), Expect = 2e-026
Identities = 51/76 (67%), Positives = 54/76 (71%)
Frame = +3 / -2
Query: 9 LISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLAGR 188
LIS S L T++K DP+SITFLPS LTL KC HGL SNL A SPAL CWL NPIS L GR
Sbjct: 583 LISSSCLPTLRKCDPLSITFLPSCLTLLKCSHGLTSNLRFAFSPALMCWLWNPISCLVGR 404
Query: 189 PCFVFGQRRNMSTECF 236
P G RRNMS CF
Sbjct: 403 PSVALGHRRNMSAVCF 356
Score = 104 bits (221), Expect = 3e-022
Identities = 45/77 (58%), Positives = 55/77 (71%)
Frame = +2 / -1
Query: 5 KPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLACR 184
K NL LM+ N EEM P IDHL A+ PHP EMLTRA +KP++ LPCL++LA EP+QL
Sbjct: 587 KTNLQLMLANLEEM*PFIDHLSAVLPHPAEMLTRAHLKPQVRLLPCLDVLALEPDQLPRW 408
Query: 185 ATLFRVWPAEEHEHRVL 235
+ + R P EEHE RVL
Sbjct: 407 SAVGRAGPPEEHERRVL 357
>gb|CW470463.1|CW470463 fsbb001f223k20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f223k20, DNA
sequence
Length = 470
Score = 136 bits (292), Expect = 5e-032
Identities = 57/78 (73%), Positives = 63/78 (80%)
Frame = +3 / -3
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
S LISI+WLS ++K* PISI F+PSALTL KC GLMSNL L VSP LRCWL+NPISWLA
Sbjct: 300 STLISIAWLSPVRK*APISIPFIPSALTLLKCSPGLMSNLRLPVSPPLRCWLMNPISWLA 121
Query: 183 GRPCFVFGQRRNMSTECF 236
GRP FVF RR +S ECF
Sbjct: 120 GRPPFVFAPRRTISAECF 67
Score = 133 bits (284), Expect = 6e-031
Identities = 57/78 (73%), Positives = 60/78 (76%)
Frame = -3 / +2
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHS LM LR NT GRPASQLIGF SQHLK GET LRFDISP +HFSRVRADG K ID
Sbjct: 68 KHSALMVLRGANTNGGRPASQLIGFMSQHLKGGETGNLRFDISPGEHFSRVRADGMKGID 247
Query: 55 IGSHFFMVDNHEMEIRFE 2
IG+HF DNH +EIR E
Sbjct: 248 IGAHFLTGDNHAIEIRVE 301
Score = 130 bits (278), Expect = 4e-030
Identities = 55/76 (72%), Positives = 58/76 (76%)
Frame = -2 / +1
Query: 236 EALGAHVPPLAKHETRSPGKPADWVQEPASQGRGDG*AQV*HQPV*AFLQGEGGWQEGDR 57
EALGA PP KHE R+P KPADWV EPASQGRGDG Q+*HQ AF QGEGGW EGDR
Sbjct: 67 EALGADGPPGGKHEWRAPSKPADWVHEPASQGRGDGQPQI*HQSGGAFQQGEGGWDEGDR 246
Query: 56 YWVSFLHG*QP*DGD* 9
YW SF HG*QP + D*
Sbjct: 247 YWGSFPHG*QPCNRD* 294
Score = 119 bits (254), Expect = 9e-027
Identities = 52/78 (66%), Positives = 56/78 (71%)
Frame = +2 / -2
Query: 2 LKPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLAC 181
L PNL MVV EEM PNID L IRPHP EML R DVK E++RLP LEMLA EPNQLAC
Sbjct: 301 LNPNLDCMVVTREEMSPNIDPLHPIRPHPAEMLPRTDVKSEVARLPSLEMLAHEPNQLAC 122
Query: 182 RATLFRVWPAEEHEHRVL 235
A RV P E+H+ RVL
Sbjct: 121 WAPSIRVCPPEDHQRRVL 68
Score = 114 bits (244), Expect = 2e-025
Identities = 56/78 (71%), Positives = 56/78 (71%)
Frame = +1 / -1
Query: 4 QT*SPSHGCQP*RNETQYRSPSCHPPSPWRNAYTG*CQT*A*PSPLP*DAGS*TQSAGLP 183
Q *S HGC P* NE QYRSPS HPPSP NA *CQ * PSPLP*DAGS*TQSAGL
Sbjct: 299 QP*SRLHGCHP*GNEPQYRSPSSHPPSPC*NAPPD*CQI*GCPSPLP*DAGS*TQSAGLL 120
Query: 184 GDLVSCLASGGT*APSAS 237
G L SCL GG APSAS
Sbjct: 119 GALHSCLPPGGPSAPSAS 66
Score = 102 bits (217), Expect = 1e-021
Identities = 55/78 (70%), Positives = 61/78 (78%)
Frame = -1 / +3
Query: 237 GSTRCSCSSAGQTRNKVARQAS*LGSGASISRQGRRLSSGLTSARVSISPG*GRMAGR*S 58
GSTR SS GQTR + A+QAS*LGS ASISR+GRR +S LTS R SIS G*GRM R S
Sbjct: 66 GSTRR*WSSGGQTRMEGAQQAS*LGS*ASISREGRRATSDLTSVRGSISAG*GRMG*RGS 245
Query: 57 ILGLISSWLTTMRWRLGL 4
ILGLISS +TTM+ RLGL
Sbjct: 246 ILGLISSRVTTMQSRLGL 299
>gb|BF586531.1|BF586531 FM1_29_D03.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 449
Score = 100 bits (213), Expect(2) = 9e-026
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / +3
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 255 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 434
Query: 10 RF 5
F
Sbjct: 435 SF 440
Score = 32.7 bits (65), Expect(2) = 9e-026
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 204 KHPVLVFLRWPNATDG 251
>gb|BG158516.1|BG158516 RHIZ2_41_D05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 100 bits (213), Expect(2) = 9e-026
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / +2
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 245 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 424
Query: 10 RF 5
F
Sbjct: 425 SF 430
Score = 32.7 bits (65), Expect(2) = 9e-026
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +2
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 194 KHPVLVFLRWPNATDG 241
>gb|CW441132.1|CW441132 fsbb001f160c04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f160c04, DNA
sequence
Length = 579
Score = 100 bits (213), Expect(2) = 1e-025
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / -2
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 203 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 24
Query: 10 RF 5
F
Sbjct: 23 SF 18
Score = 32.7 bits (65), Expect(2) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / -2
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 254 KHPVLVFLRWPNATDG 207
>gb|CN140560.1|CN140560 OX1_45_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_45_D03_A002 3', mRNA sequence
Length = 614
Score = 100 bits (213), Expect(2) = 1e-025
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / +3
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 243 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 422
Query: 10 RF 5
F
Sbjct: 423 SF 428
Score = 32.7 bits (65), Expect(2) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 192 KHPVLVFLRWPNATDG 239
>gb|CW090590.1|CW090590 104_436_10949365_116_32610_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949365, DNA
sequence
Length = 675
Score = 100 bits (213), Expect(2) = 1e-025
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / -1
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 213 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 34
Query: 10 RF 5
F
Sbjct: 33 SF 28
Score = 32.7 bits (65), Expect(2) = 1e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / -1
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 264 KHPVLVFLRWPNATDG 217
>gb|CN136631.1|CN136631 OX1_44_H06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_H06_A002 3', mRNA sequence
Length = 772
Score = 100 bits (213), Expect(2) = 2e-025
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = -3 / +2
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEI 11
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E E+
Sbjct: 317 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEM 496
Query: 10 RF 5
F
Sbjct: 497 SF 502
Score = 32.7 bits (65), Expect(2) = 2e-025
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / +2
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 266 KHPVLVFLRWPNATDG 313
>gb|CW468044.1|CW468044 fsbb001f219p23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219p23, DNA
sequence
Length = 509
Score = 95.5 bits (202), Expect(2) = 3e-024
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = -3 / -2
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHE 20
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV + E
Sbjct: 172 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDE 2
Score = 32.7 bits (65), Expect(2) = 3e-024
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3 / -2
Query: 235 KHSVLMFLRWPNTKQG 188
KH VL+FLRWPN G
Sbjct: 223 KHPVLVFLRWPNATDG 176
>gb|CW281091.1|CW281091 104_756_11407983_116_35449_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407983, DNA
sequence
Length = 679
Score = 108 bits (231), Expect = 1e-023
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = -3 / -1
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRAD 74
KHSVLMFLRWPN GRP SQLIGF SQH+KAGE A +RFD+ PC+HFSR RAD
Sbjct: 163 KHSVLMFLRWPNATDGRPVSQLIGFTSQHIKAGEKANVRFDVRPCEHFSRARAD 2
>gb|BE356658.1|BE356658 DG1_12_A04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 513
Score = 93.6 bits (198), Expect(2) = 5e-022
Identities = 37/53 (69%), Positives = 43/53 (81%)
Frame = -3 / +1
Query: 190 GRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMV 32
GRPA QLIGF+S HL+A +TA + F++SPCKHFSR DGRKVID GSHF MV
Sbjct: 349 GRPARQLIGFQSLHLRATQTAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMV 507
Score = 27.2 bits (53), Expect(2) = 5e-022
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3 / +1
Query: 226 VLMFLRWPNTKQG 188
VL+FLRWPN G
Sbjct: 307 VLVFLRWPNATDG 345
>gb|BG158526.1|BG158526 RHIZ2_41_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 350
Score = 68.0 bits (142), Expect(3) = 1e-021
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = -3 / +1
Query: 133 TAKLRFDISPCKHFSRVRADGRKVIDIGSHFFMVDNHEMEIRF 5
+A + F++SPCKHFSR DGRKVID GSHF MV + E E+ F
Sbjct: 214 SAHVEFEVSPCKHFSRATEDGRKVIDQGSHFVMVGDDEFEMSF 342
Score = 33.6 bits (67), Expect(3) = 1e-021
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -3 / +3
Query: 190 GRPASQLIGFRSQHLKA 140
GRPA QLIGF+S HL+A
Sbjct: 156 GRPARQLIGFQSLHLRA 206
Score = 31.8 bits (63), Expect(3) = 1e-021
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3 / +3
Query: 235 KHSVLMFLRWPNTKQG 188
KH V++FLRWPN G
Sbjct: 105 KHPVMVFLRWPNATDG 152
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 349,233,590
Number of Sequences: 832831
Number of extensions: 4877043
Number of successful extensions: 595855
Number of sequences better than 1.0e-020: 20
length of database: 163,786,556
effective HSP length: 49
effective length of database: 122,977,837
effective search space used: 3566357273
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)