TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP922671.1|BP922671 BP922671 full-length enriched poplar... 200 8e-084
gb|BU878522.1|BU878522 V048D07 Populus flower cDNA library ... 220 1e-073
gb|CA934423.1|CA934423 MTU3TS.P7.D08 Aspen stem cDNA Librar... 223 2e-072
gb|AJ777184.1|AJ777184 AJ777184 Populus euphratica root 3-6... 172 4e-070
gb|BI128034.1|BI128034 G070P01Y Populus cambium cDNA librar... 261 1e-068
gb|CA933245.1|CA933245 MTU5CS.P5.E03 Aspen stem cDNA Librar... 146 4e-065
gb|CA933512.1|CA933512 MTU5CS.P9.A07 Aspen stem cDNA Librar... 146 8e-065
gb|CA932912.1|CA932912 MTU5CS.P1.B01 Aspen stem cDNA Librar... 123 6e-058
gb|CK102503.1|CK102503 G080P52.5pR Populus tension wood cDN... 178 1e-056
gb|BI128723.1|BI128723 G080P52Y Populus cambium cDNA librar... 175 9e-056
gb|DT500159.1|DT500159 PX0011.BR_G11 PT-X-FL-A-1 Populus tr... 197 3e-051
gb|BU825846.1|BU825846 UK113TG04 Populus apical shoot cDNA ... 83 3e-044
gb|CX169703.1|CX169703 E01_69-117_09.ab1 leaf inoculated wi... 176 3e-044
gb|CA932759.1|CA932759 MTU5CS.P17.A12 Aspen stem cDNA Libra... 86 4e-043
gb|BP923506.1|BP923506 BP923506 full-length enriched poplar... 72 1e-042
gb|CA823795.1|CA823795 R31E03 two-month-old roots from clon... 96 1e-040
gb|CA824656.1|CA824656 R46B11 two-month-old roots from clon... 96 8e-039
gb|DT524818.1|DT524818 WS02043.C21_K21 PTxN-IB-N-A-11 Popul... 94 1e-037
gb|CX168427.1|CX168427 B06_69-85_04.ab1 leaf inoculated wit... 155 1e-036
gb|DT517940.1|DT517940 WS02435.B21_L21 PTxD-ICC-N-A-14 Popu... 74 1e-035
gb|BU818306.1|BU818306 UA28DPE12 Populus tremula cambium cD... 120 7e-035
gb|CK092375.1|CK092375 G080P52.3pR Populus tension wood cDN... 91 1e-033
gb|DT516146.1|DT516146 WS02430.B21_I16 PTxD-ICC-N-A-14 Popu... 74 2e-033
gb|BI122335.1|BI122335 I005P31P Populus leaf cDNA library P... 88 2e-033
gb|AY190017.1| Populus tomentosa cell-wall invertase gene, ... 68 2e-032
gb|CF234201.1|CF234201 PtaJXO3G12G1214 Poplar cDNA library ... 92 1e-028
gb|DN503017.1|DN503017 X051B06.5pR Populus wood cDNA librar... 53 7e-028
gb|DT514871.1|DT514871 WS02426.B21_A05 PTxD-ICC-N-A-14 Popu... 74 2e-027
gb|BP930467.1|BP930467 BP930467 full-length enriched poplar... 93 5e-027
gb|CX654517.1|CX654517 PO02011E09 Poplar SC cDNA library Po... 102 1e-025
gb|BU897099.1|BU897099 X051B06 Populus wood cDNA library Po... 53 2e-025
>gb|BP922671.1|BP922671 BP922671 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-010_G04.f 5', mRNA sequence
Length = 640
Score = 200 bits (431), Expect(4) = 8e-084
Identities = 79/108 (73%), Positives = 88/108 (81%)
Frame = -1 / +3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAK 1119
V HV+K S+DDDRHDYYALG Y W P + DVGIG+RYD+G FYASKTFYD +K
Sbjct: 315 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGIRYDYGIFYASKTFYDQSK 494
Query: 1118 RRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLDTKTGSNLLQWPV 975
RRVLWGW+GE+DSE ADV KGWASLQGIPRTV+ DTKTGSNLLQWPV
Sbjct: 495 GRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVWDTKTGSNLLQWPV 638
Score = 92.7 bits (196), Expect(3) = 2e-032
Identities = 47/79 (59%), Positives = 54/79 (68%)
Frame = +1 / -1
Query: 973 STGH*SRLLPVLVSRSTVRGIPCSDAHPLDTSARSESVSPTHPHSTRRRLAGS*NVLDA* 1152
STGH*SRLLPV VS +TV G+P DAHP TSA S S SP PH+T L S*NVL+A*
Sbjct: 640 STGH*SRLLPVFVSHTTVLGMP*RDAHPFFTSATSLSDSPIQPHNTLLPLL*S*NVLEA* 461
Query: 1153 NLPQS*RRPMPTSLPASIG 1209
N+P S P+PTS+ G
Sbjct: 460 NMP*SYLIPIPTSISGLSG 404
Score = 72.5 bits (152), Expect(4) = 8e-084
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1 / +3
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D +++ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 153 GIALVYDTEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQ 281
Score = 70.7 bits (148), Expect(4) = 8e-084
Identities = 25/32 (78%), Positives = 25/32 (78%)
Frame = -1 / +3
Query: 1649 LLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVW 1554
LL W KY GNPVL PPPGIG KDFRDPTT W
Sbjct: 3 LLLKWVKYSGNPVLVPPPGIGAKDFRDPTTAW 98
Score = 52.8 bits (109), Expect(3) = 2e-032
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +1 / -1
Query: 1555 QTVVGSRKSLGPMPGGGYSTGLPSYLVQL 1641
Q VVGSRKSL P+PGGG TGLP YL L
Sbjct: 97 QAVVGSRKSLAPIPGGGTKTGLPEYLTHL 11
Score = 38.6 bits (78), Expect(3) = 2e-032
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +1 / -1
Query: 1366 PRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
P TG*KS HSHMPV T P +S +S V *T AMP
Sbjct: 277 PVFDTG*KSTHSHMPVLGTP*RIPLNNS*FMKSSVS*TKAMP 152
Score = 26.7 bits (52), Expect(4) = 8e-084
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 105 SEGKWRIIIGSK 140
>gb|BU878522.1|BU878522 V048D07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 701
Score = 220 bits (474), Expect(2) = 1e-073
Identities = 93/146 (63%), Positives = 110/146 (75%)
Frame = -1 / +3
Query: 1133 YDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLDTKTGSNLLQWPVEEVETLR 954
Y K RRVLWGW+GE+DSE ADV KGWASLQGIPRTV+LDTKTGSNLLQWPVEEVE+LR
Sbjct: 3 YGRGKGRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLDTKTGSNLLQWPVEEVESLR 182
Query: 953 TNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAG 774
S + + I + GS PL L ATQLDI AEF+LDR+A+ E++V ++CST+GGA+
Sbjct: 183 LKSKNFNNIEVKAGSAVPLELDGATQLDIVAEFELDRKAIERTAESNVEFSCSTNGGASH 362
Query: 773 RGALGPFGLFVLADRRLRREQTAVYF 696
RGALGPFGL VLAD L +F
Sbjct: 363 RGALGPFGLLVLADDDLTEYTPVYFF 440
Score = 79.0 bits (166), Expect(2) = 1e-073
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = -1 / +3
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYPT AIY +A
Sbjct: 498 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYPTRAIYGSA 677
Query: 452 GVFLF 438
+FLF
Sbjct: 678 RLFLF 692
>gb|CA934423.1|CA934423 MTU3TS.P7.D08 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 578
Score = 223 bits (482), Expect(2) = 2e-072
Identities = 90/131 (68%), Positives = 103/131 (78%)
Frame = -1 / -3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAK 1119
V HV+K S+DDDRHDYYALG Y W P + DVGIG+RYD+G FYASKTFYD +K
Sbjct: 393 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGIRYDYGIFYASKTFYDQSK 214
Query: 1118 RRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLDTKTGSNLLQWPVEEVETLRTNSTD 939
RRVLWGW+GE+DSE ADV KGWASLQGIPRTV+LDTKTGSNLLQWPVEEVE+LR +
Sbjct: 213 GRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLDTKTGSNLLQWPVEEVESLRLKGKN 34
Query: 938 LSGITIDYGSV 906
+ I + GSV
Sbjct: 33 FNDIEVKAGSV 1
Score = 104 bits (221), Expect(2) = 4e-026
Identities = 55/101 (54%), Positives = 65/101 (64%)
Frame = +1 / +2
Query: 907 TEP*SMVMPLRSVELVRSVSTSSTGH*SRLLPVLVSRSTVRGIPCSDAHPLDTSARSESV 1086
T+P M L+ + +STSSTGH*SRLLPV VS +TV G+P DAHP TSA S S
Sbjct: 2 TDPALTSMSLKFLPFNLKLSTSSTGH*SRLLPVFVSNTTVLGMP*RDAHPFFTSATSLSD 181
Query: 1087 SPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIG 1209
SP PHST L S*NVL+A*N+P S P+PTS+ G
Sbjct: 182 SPIQPHSTLLPLL*S*NVLEA*NMP*SYLIPIPTSISGLSG 304
Score = 70.7 bits (148), Expect(2) = 2e-072
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -1 / -3
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D ++ ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 555 GIALVYDTEDFINHELLSGILHGVPKTGMWECVDFYPVSKTGQ 427
Score = 38.6 bits (78), Expect(2) = 4e-026
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +1 / +2
Query: 1366 PRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
P TG*KS HSHMPV T P +S +S V *T AMP
Sbjct: 431 PVFDTG*KSTHSHMPVLGTP*RIPLNNS*FMKSSVS*TKAMP 556
>gb|AJ777184.1|AJ777184 AJ777184 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400024D02F1, mRNA sequence
Length = 580
Score = 172 bits (371), Expect(4) = 4e-070
Identities = 68/96 (70%), Positives = 77/96 (80%)
Frame = -1 / +1
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAK 1119
V HV+K S+DDDRHDYYALG Y W P + DVGIG+RYD+G FYASKTFYD +K
Sbjct: 292 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGIRYDYGIFYASKTFYDQSK 471
Query: 1118 RRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
RRVLWGW+GE+DSE ADV KGWASLQGIPRTV+LD
Sbjct: 472 GRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLD 579
Score = 72.5 bits (152), Expect(4) = 4e-070
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1 / +1
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D +++ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 130 GIALVYDTEDFINYELLSGILHGVPETGMWECVDFYPVSKTGQ 258
Score = 67.0 bits (140), Expect(4) = 3e-023
Identities = 35/66 (53%), Positives = 42/66 (63%)
Frame = +1 / -3
Query: 1012 SRSTVRGIPCSDAHPLDTSARSESVSPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTS 1191
S +TV G+P DAHP TSA S S SP PH+T L S*NVL+A*N+P S P+PTS
Sbjct: 578 SNTTVLGMP*RDAHPFFTSATSLSDSPIQPHNTLLPLL*S*NVLEA*NMP*SYLIPIPTS 399
Query: 1192 LPASIG 1209
+ G
Sbjct: 398 ISGLSG 381
Score = 51.5 bits (106), Expect(4) = 4e-070
Identities = 18/21 (85%), Positives = 18/21 (85%)
Frame = -1 / +1
Query: 1616 PVLYPPPGIGPKDFRDPTTVW 1554
PVL PPPGIG KDFRDPTT W
Sbjct: 13 PVLVPPPGIGAKDFRDPTTAW 75
Score = 40.9 bits (83), Expect(4) = 3e-023
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1 / -3
Query: 1555 QTVVGSRKSLGPMPGGGYSTG 1617
Q VVGSRKSL P+PGGG TG
Sbjct: 74 QAVVGSRKSLAPIPGGGTKTG 12
Score = 39.6 bits (80), Expect(4) = 3e-023
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +1 / -3
Query: 1366 PRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
P TG*KS HSHMPV T P +S +S V *T AMP
Sbjct: 254 PVFDTG*KSTHSHMPVSGTP*RIPLNNS*FMKSSVS*TKAMP 129
Score = 27.2 bits (53), Expect(4) = 4e-070
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSK 1509
S+G WR+VIGSK
Sbjct: 82 SEGKWRIVIGSK 117
Score = 23.5 bits (45), Expect(4) = 3e-023
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1 / -3
Query: 1510 LEPMTTRHAPSE 1545
L+P+T RH PSE
Sbjct: 116 LDPITMRHFPSE 81
>gb|BI128034.1|BI128034 G070P01Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 519
Score = 261 bits (564), Expect = 1e-068
Identities = 108/153 (70%), Positives = 126/153 (82%)
Frame = -1 / +3
Query: 1190 DVGIGLRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
DVGIG+RYD+G FYASKTFYD +K RRVLWGW+GE+DSE ADV KGWASLQGIPRTV+LD
Sbjct: 36 DVGIGIRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLD 215
Query: 1010 TKTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVM 831
TKTGSNLLQWPVEEVE+LR + I + GSV PL L ATQLDI AEF+LDR+A+
Sbjct: 216 TKTGSNLLQWPVEEVESLRLKGKSFNNIEVKAGSVVPLVLDGATQLDIVAEFELDRKAIE 395
Query: 830 SLNEADVGYNCSTSGGAAGRGALGPFGLFVLAD 732
E++V ++CST+GGA+ RGALGPFGL VLAD
Sbjct: 396 RTAESNVEFSCSTNGGASHRGALGPFGLLVLAD 494
Score = 109 bits (232), Expect = 7e-023
Identities = 58/111 (52%), Positives = 70/111 (63%)
Frame = +1 / -3
Query: 880 VARRRLSGNTEP*SMVMPLRSVELVRSVSTSSTGH*SRLLPVLVSRSTVRGIPCSDAHPL 1059
VA SG T+P M L+ + +STSSTGH*SRLLPV VS +TV G+P DAHP
Sbjct: 346 VAPSSTSGTTDPALTSMLLKLLPFNLKLSTSSTGH*SRLLPVFVSNTTVLGMP*RDAHPF 167
Query: 1060 DTSARSESVSPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIGV 1212
TSA S S SP PHST L S*NVL+A*N+P S P+PTS+ + +
Sbjct: 166 FTSATSLSDSPIQPHSTLLPLL*S*NVLEA*NMP*SYLIPIPTSISGLVRI 14
>gb|CA933245.1|CA933245 MTU5CS.P5.E03 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 570
Score = 146 bits (314), Expect(4) = 4e-065
Identities = 57/76 (75%), Positives = 59/76 (77%)
Frame = -1 / +1
Query: 1781 DTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYP 1602
D NGVWTGSAT LPDG++ MLY GSTN SVQVQ L PAD DPLL W KY GNPVL P
Sbjct: 1 DKNGVWTGSATILPDGKIVMLYTGSTNESVQVQNLVYPADHDDPLLLKWVKYSGNPVLVP 180
Query: 1601 PPGIGPKDFRDPTTVW 1554
PPGIG KDFRDPTT W
Sbjct: 181 PPGIGAKDFRDPTTAW 228
Score = 89.5 bits (189), Expect(2) = 1e-022
Identities = 38/75 (50%), Positives = 47/75 (62%)
Frame = +1 / -2
Query: 1555 QTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARR 1734
Q VVGSRKSL P+PGGG TGLP YL L R TWT++LV+P+ S+
Sbjct: 227 QAVVGSRKSLAPIPGGGTKTGLPEYLTHLRRRGSSWSAGYTRF*TWTDSLVDPVYSMTIL 48
Query: 1735 PSGSVVADPVHTPLV 1779
PSG +VA+PV TP +
Sbjct: 47 PSGRIVAEPVQTPFL 3
Score = 72.5 bits (152), Expect(4) = 4e-065
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1 / +1
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D +++ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 283 GIALVYDTEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQ 411
Score = 61.1 bits (127), Expect(4) = 4e-065
Identities = 24/42 (57%), Positives = 28/42 (66%)
Frame = -1 / +1
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGL 1173
V HV+K S+DDDRHDYYALG Y W P + DVGIG+
Sbjct: 445 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGI 570
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +1 / -2
Query: 1366 PRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
P TG*KS HSHMPV T P +S +S V *T AMP
Sbjct: 407 PVFDTG*KSTHSHMPVLGTP*RIPLNNS*FMKSSVS*TKAMP 282
Score = 26.7 bits (52), Expect(4) = 4e-065
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 235 SEGKWRIIIGSK 270
>gb|CA933512.1|CA933512 MTU5CS.P9.A07 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 569
Score = 146 bits (314), Expect(4) = 8e-065
Identities = 57/76 (75%), Positives = 60/76 (78%)
Frame = -1 / -1
Query: 1781 DTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYP 1602
D NGVWTGSAT LPDG++ MLY GSTN SV+VQ LA PAD DPLL W KY GNPVL P
Sbjct: 569 DKNGVWTGSATILPDGKIVMLYTGSTNESVRVQNLAYPADHDDPLLLKWVKYSGNPVLVP 390
Query: 1601 PPGIGPKDFRDPTTVW 1554
PPGIG KDFRDPTT W
Sbjct: 389 PPGIGAKDFRDPTTAW 342
Score = 84.9 bits (179), Expect(2) = 2e-021
Identities = 38/75 (50%), Positives = 47/75 (62%)
Frame = +1 / +1
Query: 1555 QTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARR 1734
Q VVGSRKSL P+PGGG TGLP YL L AR T T++LV+P+ S+
Sbjct: 343 QAVVGSRKSLAPIPGGGTKTGLPEYLTHLRRRGSSWSAGYARF*TRTDSLVDPVYSMTIL 522
Query: 1735 PSGSVVADPVHTPLV 1779
PSG +VA+PV TP +
Sbjct: 523 PSGRIVAEPVQTPFL 567
Score = 72.5 bits (152), Expect(4) = 8e-065
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1 / -1
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D +++ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 287 GIALVYDTEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQ 159
Score = 60.2 bits (125), Expect(4) = 8e-065
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -1
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIG 1176
V HV+K S+DDDRHDYYALG Y W P + DVGIG
Sbjct: 125 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIG 3
Score = 38.6 bits (78), Expect(2) = 2e-021
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = +1 / +1
Query: 1366 PRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
P TG*KS HSHMPV T P +S +S V *T AMP
Sbjct: 163 PVFDTG*KSTHSHMPVLGTP*RIPLNNS*FMKSSVS*TKAMP 288
Score = 26.7 bits (52), Expect(4) = 8e-065
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / -1
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 335 SEGKWRIIIGSK 300
>gb|CA932912.1|CA932912 MTU5CS.P1.B01 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 535
Score = 123 bits (263), Expect(4) = 6e-058
Identities = 48/64 (75%), Positives = 50/64 (78%)
Frame = -1 / -3
Query: 1745 LPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDP 1566
LPDG++ MLY GSTN SVQVQ LA PAD DPLL W KY GNPVL PPPGIG KDFRDP
Sbjct: 533 LPDGKIVMLYTGSTNESVQVQNLAYPADHDDPLLLKWVKYSGNPVLVPPPGIGAKDFRDP 354
Query: 1565 TTVW 1554
TT W
Sbjct: 353 TTAW 342
Score = 72.5 bits (152), Expect(4) = 6e-058
Identities = 26/43 (60%), Positives = 34/43 (79%)
Frame = -1 / -3
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D +++ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 287 GIALVYDTEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQ 159
Score = 60.2 bits (125), Expect(4) = 6e-058
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = -1 / -3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIG 1176
V HV+K S+DDDRHDYYALG Y W P + DVGIG
Sbjct: 125 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIG 3
Score = 26.7 bits (52), Expect(4) = 6e-058
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / -3
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 335 SEGKWRIIIGSK 300
>gb|CK102503.1|CK102503 G080P52.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G080P52 5', mRNA sequence
Length = 503
Score = 178 bits (383), Expect(2) = 1e-056
Identities = 77/125 (61%), Positives = 94/125 (75%)
Frame = -1 / +3
Query: 1058 KGWASLQGIPRTVLLDTKTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRAT 879
KGWASLQGIPRTV+LDTKTGSNLLQWPVEEVE+LR + I + GSV PL L AT
Sbjct: 3 KGWASLQGIPRTVVLDTKTGSNLLQWPVEEVESLRLKGKSFNNIEVKAGSVVPLVLDGAT 182
Query: 878 QLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTAVY 699
QLDI AEF+LDR+A+ E++V ++CST+GGA+ RGALGPFGL VLAD +R + +
Sbjct: 183 QLDIVAEFELDRKAIERTAESNVEFSCSTNGGASHRGALGPFGLLVLADDDTQRVYSRIL 362
Query: 698 FYVAK 684
F + K
Sbjct: 363 FLLPK 377
Score = 63.8 bits (133), Expect(2) = 1e-056
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = -1 / +2
Query: 698 FYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDE 570
F+VAKG +GSL T FC D+SRSS A D+ K + GS VPVLE E
Sbjct: 362 FFVAKGNNGSLKTFFCTDQSRSSVANDVRKEIYGSYVPVLEGE 490
>gb|BI128723.1|BI128723 G080P52Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 537
Score = 175 bits (376), Expect(2) = 9e-056
Identities = 76/121 (62%), Positives = 90/121 (74%)
Frame = -1 / +1
Query: 1058 KGWASLQGIPRTVLLDTKTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRAT 879
KGWASLQGIPRTV+LDTKTGSNLLQWPVEEVE+LR + I + GSV PL L AT
Sbjct: 1 KGWASLQGIPRTVVLDTKTGSNLLQWPVEEVESLRLKGKSFNNIEVKAGSVVPLVLDGAT 180
Query: 878 QLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTAVY 699
QLDI AEF+LDR+A+ E++V ++CST+GGA+ RGALGPFGL VLAD L +
Sbjct: 181 QLDIVAEFELDRKAIERTAESNVEFSCSTNGGASHRGALGPFGLLVLADDDLSEYTPVYF 360
Query: 698 F 696
F
Sbjct: 361 F 363
Score = 63.8 bits (133), Expect(2) = 9e-056
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = -1 / +2
Query: 698 FYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDE 570
F+VAKG +GSL T FC D+SRSS A D+ K + GS VPVLE E
Sbjct: 359 FFVAKGNNGSLKTFFCTDQSRSSVANDVRKEIYGSYVPVLEGE 487
>gb|DT500159.1|DT500159 PX0011.BR_G11 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_G11
5', mRNA sequence
Length = 673
Score = 197 bits (424), Expect(2) = 3e-051
Identities = 76/103 (73%), Positives = 82/103 (79%)
Frame = -1 / +1
Query: 1862 VIKGHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQ 1683
++ GHAVS+DLI W LPLAMV D+WYD NGVWTGSAT LPDG++ MLY GSTN SVQVQ
Sbjct: 265 IVWGHAVSKDLIHWLHLPLAMVADKWYDKNGVWTGSATILPDGKIVMLYTGSTNESVQVQ 444
Query: 1682 CLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVW 1554
LA PAD DPLL W KY GNPVL PPPGIG KDFRDPTT W
Sbjct: 445 NLAYPADHDDPLLLKWVKYSGNPVLVPPPGIGAKDFRDPTTAW 573
Score = 125 bits (268), Expect = 8e-028
Identities = 52/100 (52%), Positives = 63/100 (63%)
Frame = +1 / -3
Query: 1555 QTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARR 1734
Q VVGSRKSL P+PGGG TGLP YL L AR CTWT++LV+P+ S+
Sbjct: 572 QAVVGSRKSLAPIPGGGTKTGLPEYLTHLRRRGSSWSAGYARFCTWTDSLVDPVYSMTIL 393
Query: 1735 PSGSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWP 1854
PSG +VA+PV TP +SYH S T+A+G DTAWP
Sbjct: 392 PSGRIVAEPVQTPFLSYHLSATIANGRWSQWIKSFDTAWP 273
Score = 26.7 bits (52), Expect(2) = 3e-051
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 580 SEGKWRIIIGSK 615
>gb|BU825846.1|BU825846 UK113TG04 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 536
Score = 82.6 bits (174), Expect(4) = 3e-044
Identities = 33/44 (75%), Positives = 39/44 (88%)
Frame = -1 / +2
Query: 557 LRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANAGVFLFNNAT 426
+R+LVDHSIVESFAQGGR TSR+YPT+AIY +A +FLFNNAT
Sbjct: 395 MRLLVDHSIVESFAQGGRRVITSRIYPTKAIYGDARLFLFNNAT 526
Score = 57.4 bits (119), Expect(4) = 3e-044
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = -1 / +2
Query: 716 EQTAVYFYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDE 570
E T ++F DG + +FC DE+RSS A+D+ K V GS VPV DE
Sbjct: 239 ELTPIFFRPVNTTDGIVEAYFCADETRSSKASDVFKHVYGSTVPVFTDE 385
Score = 56.5 bits (117), Expect(4) = 3e-044
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = -1 / +2
Query: 974 EEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQLD 846
EEVE+LR STD + I + GSV PL++ +ATQLDI AEF+++
Sbjct: 2 EEVESLRLRSTDFTEIVVGPGSVVPLDIGQATQLDIFAEFEIE 130
Score = 40.0 bits (81), Expect(4) = 3e-044
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1 / +2
Query: 791 SGGAAGRGALGPFGLFVLADRRL 723
SGGA R ALGPFGL V+AD+ L
Sbjct: 167 SGGAVDRSALGPFGLLVIADQTL 235
>gb|CX169703.1|CX169703 E01_69-117_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 716
Score = 176 bits (378), Expect(2) = 3e-044
Identities = 69/103 (66%), Positives = 77/103 (74%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVS DLI W LP AMVPD WYD NGVWTGSAT LPDG++ MLY GSTN SVQVQ LA
Sbjct: 329 GHAVSTDLIHWLYLPFAMVPDHWYDINGVWTGSATLLPDGQIMMLYTGSTNESVQVQNLA 508
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDP 1545
PA+ +DPLL +W KY NPV+ PP G +FRDPTT W+ P
Sbjct: 509 YPANLSDPLLIDWVKYPNNPVITPPNGTETDEFRDPTTAWMGP 637
Score = 24.4 bits (47), Expect(2) = 3e-044
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1 / +2
Query: 1541 DGAWRVVIGSK 1509
DG WR+ IGS+
Sbjct: 638 DGTWRITIGSR 670
>gb|CA932759.1|CA932759 MTU5CS.P17.A12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 576
Score = 86.3 bits (182), Expect(3) = 4e-043
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = -1 / -2
Query: 899 LNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLR 720
L L ATQLDI AEF+LDR+AV E++V ++CST+GGA+ RGALGPFGL VLAD L
Sbjct: 575 LELDGATQLDIVAEFELDRKAVERTAESNVEFSCSTNGGASHRGALGPFGLLVLADDDLS 396
Query: 719 REQTAVYF 696
+F
Sbjct: 395 EYTPVYFF 372
Score = 72.5 bits (152), Expect(3) = 4e-043
Identities = 31/49 (63%), Positives = 36/49 (73%)
Frame = -1 / -2
Query: 716 EQTAVYFYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDE 570
E T VYF+VAKG +GSL T FC D+SRSS A D+ K + GS VPVLE E
Sbjct: 395 EYTPVYFFVAKGNNGSLKTFFCTDQSRSSVANDVRKEIYGSYVPVLEGE 249
Score = 56.1 bits (116), Expect(3) = 4e-043
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -1 / -3
Query: 512 GGRSTATSRVYPTEAIYANAGVFLFNNATAARVTAT 405
GGR+ TSRVYPT AIY A +FLFNNAT A VT++
Sbjct: 196 GGRTCITSRVYPTTAIYGAARLFLFNNATDAGVTSS 89
>gb|BP923506.1|BP923506 BP923506 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-020_J03.f 5', mRNA sequence
Length = 447
Score = 71.6 bits (150), Expect(4) = 1e-042
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -1 / +1
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGR 1362
GIA+VY T D + +ELL G+LH V TGMWEC+DFYPV+ G+
Sbjct: 154 GIALVYDTEDFISYELLSGILHGVPKTGMWECVDFYPVSKTGQ 282
Score = 67.0 bits (140), Expect(4) = 1e-042
Identities = 24/32 (75%), Positives = 24/32 (75%)
Frame = -1 / +3
Query: 1649 LLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVW 1554
LL W KY GNPV PPPGIG KDFRDPTT W
Sbjct: 3 LLLKWVKYSGNPV*VPPPGIGAKDFRDPTTAW 98
Score = 65.7 bits (137), Expect(4) = 1e-042
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = -1 / +1
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRY 1167
V HV+K S+DDDRHDYYALG Y W P + DVG+G+RY
Sbjct: 316 VKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGLGIRY 447
Score = 26.7 bits (52), Expect(4) = 1e-042
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSK 1509
S+G WR++IGSK
Sbjct: 106 SEGKWRIIIGSK 141
>gb|CA823795.1|CA823795 R31E03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 605
Score = 95.9 bits (203), Expect(2) = 1e-040
Identities = 42/82 (51%), Positives = 55/82 (67%)
Frame = -1 / +1
Query: 941 DLSGITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGAL 762
+ + I + GS PL L ATQLDI AEF+LDR+A+ E++V ++CST+GGA+ RGAL
Sbjct: 16 EFNNIEVKAGSAVPLELDGATQLDIVAEFELDRKAIERTAESNVEFSCSTNGGASHRGAL 195
Query: 761 GPFGLFVLADRRLRREQTAVYF 696
GPFGL VLAD L +F
Sbjct: 196 GPFGLLVLADDDLTEYTPVYFF 261
Score = 92.7 bits (196), Expect(2) = 1e-040
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = -1 / +1
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYPT AIY A
Sbjct: 319 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYPTRAIYGAA 498
Query: 452 GVFLFNNATAARVTAT 405
+FLFNNAT A VT++
Sbjct: 499 RLFLFNNATEAGVTSS 546
>gb|CA824656.1|CA824656 R46B11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 576
Score = 95.9 bits (203), Expect(2) = 8e-039
Identities = 42/82 (51%), Positives = 55/82 (67%)
Frame = -1 / +1
Query: 941 DLSGITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGAL 762
+ + I + GS PL L ATQLDI AEF+LDR+A+ E++V ++CST+GGA+ RGAL
Sbjct: 22 EFNNIEVKAGSAVPLELDGATQLDIVAEFELDRKAIERTAESNVEFSCSTNGGASHRGAL 201
Query: 761 GPFGLFVLADRRLRREQTAVYF 696
GPFGL VLAD L +F
Sbjct: 202 GPFGLLVLADDDLTEYTPVYFF 267
Score = 86.3 bits (182), Expect(2) = 8e-039
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = -1 / +1
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYPT AIY A
Sbjct: 325 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYPTRAIYGAA 504
Query: 452 GVFLFNNATAARVTAT 405
+ LF NAT A VT++
Sbjct: 505 RLXLFXNATEAGVTSS 552
>gb|DT524818.1|DT524818 WS02043.C21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02043_K21 3', mRNA sequence
Length = 855
Score = 94.1 bits (199), Expect(2) = 1e-037
Identities = 41/76 (53%), Positives = 56/76 (73%)
Frame = -1 / -1
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYPT AIY +A
Sbjct: 600 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYPTRAIYGSA 421
Query: 452 GVFLFNNATAARVTAT 405
+FLFNNAT A VT++
Sbjct: 420 RLFLFNNATEAGVTSS 373
Score = 84.0 bits (177), Expect(2) = 1e-037
Identities = 36/63 (57%), Positives = 46/63 (73%)
Frame = -1 / -1
Query: 884 ATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTA 705
ATQLDI AEF+LDR+A+ E++V ++CST+GGA+ RGALGPFGL VLAD L
Sbjct: 846 ATQLDIVAEFELDRKAIERTAESNVEFSCSTNGGASHRGALGPFGLLVLADDDLTEYTPV 667
Query: 704 VYF 696
+F
Sbjct: 666 YFF 658
>gb|CX168427.1|CX168427 B06_69-85_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 592
Score = 155 bits (332), Expect = 1e-036
Identities = 62/93 (66%), Positives = 69/93 (74%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVS DLI W LP AMVPD WYD NGVWTGSAT LPDG++ MLY GSTN SVQVQ LA
Sbjct: 314 GHAVSTDLIHWLYLPFAMVPDHWYDINGVWTGSATLLPDGQIMMLYTGSTNESVQVQNLA 493
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDF 1575
PA+ +DPLL +W KY NPV+ PP G +F
Sbjct: 494 YPANLSDPLLIDWVKYPNNPVITPPNGTETDEF 592
>gb|DT517940.1|DT517940 WS02435.B21_L21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_L21 3', mRNA sequence
Length = 904
Score = 73.9 bits (155), Expect(4) = 1e-035
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -1 / -2
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPT 474
C D SS + K V V + L+LR L+DHS+VESF GGR+ TSRVYP
Sbjct: 420 CSDARSSSLGVGLYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPI 241
Query: 473 EAIYANAGVFLFNNAT 426
A++ A +F+FNN +
Sbjct: 240 IAVFDKAHLFVFNNGS 193
Score = 64.8 bits (135), Expect(4) = 1e-035
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = -1 / -2
Query: 1133 YDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
+DP+ RR+LWGW E+DS + D +KGWA +Q IPR V LD
Sbjct: 903 FDPSTNRRILWGWANESDSVQQDRNKGWAGIQLIPRRVWLD 781
Score = 37.7 bits (76), Expect(4) = 1e-035
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1 / -2
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEF 855
+G LLQWPV E+E LR+++ L + G + A Q D++ F
Sbjct: 777 SGKQLLQWPVAELEKLRSHNVQLRNQKLYQGYHVEVKGITAAQADVDVTF 628
Score = 30.4 bits (60), Expect(4) = 1e-035
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1 / -2
Query: 785 GAAGRGALGPFGLFVLADRRL 723
G+ +G LGPFGL LA +L
Sbjct: 546 GSKAQGGLGPFGLLTLASEKL 484
>gb|BU818306.1|BU818306 UA28DPE12 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 450
Score = 120 bits (257), Expect(3) = 7e-035
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = -1 / +2
Query: 1301 DVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPA 1122
+V H +K S+D R++YY LG YD + P + D GLR D+G FYASKTF+DP+
Sbjct: 125 NVKHALKVSLDLTRYEYYTLGTYDNKKEKYFPDEGLVDGWAGLRLDYGNFYASKTFFDPS 304
Query: 1121 KRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
RR+LWGW E+D+ + D +KGWA + IPR V LD
Sbjct: 305 TNRRILWGWANESDAVQQDTNKGWAGILLIPRKVWLD 415
Score = 44.1 bits (90), Expect(3) = 7e-035
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -1 / +2
Query: 1430 LHRVDGTGMWECIDFYPVATRG 1365
LH V GTGMWEC DF+PV++ G
Sbjct: 26 LHSVQGTGMWECPDFFPVSSFG 91
Score = 22.1 bits (42), Expect(3) = 7e-035
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1 / +2
Query: 1004 TGSNLLQWPV 975
+G LLQWPV
Sbjct: 419 SGKQLLQWPV 448
>gb|CK092375.1|CK092375 G080P52.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G080P52 3', mRNA sequence
Length = 834
Score = 90.9 bits (192), Expect(3) = 1e-033
Identities = 40/76 (52%), Positives = 54/76 (71%)
Frame = -1 / -3
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYPT AIY A
Sbjct: 508 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYPTRAIYGAA 329
Query: 452 GVFLFNNATAARVTAT 405
+FLFNNAT VT++
Sbjct: 328 RLFLFNNATETGVTSS 281
Score = 67.5 bits (141), Expect(3) = 1e-033
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = -1 / -2
Query: 860 EFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTAVYF 696
EF+LDR+A+ E++V ++CS +GGA+ RGALGPFGL VLAD L +F
Sbjct: 731 EFELDRKAIERTAESNVEFSCSPNGGASHRGALGPFGLLVLADDDLSEYTPVYFF 567
Score = 24.4 bits (47), Expect(3) = 1e-033
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1 / -3
Query: 929 ITIDYGSVFPLNLRRATQLDI 867
I + GSV PL L TQLDI
Sbjct: 799 IEVKAGSVVPLVLDGPTQLDI 737
>gb|DT516146.1|DT516146 WS02430.B21_I16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_I16 3', mRNA sequence
Length = 893
Score = 73.9 bits (155), Expect(4) = 2e-033
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -1 / -2
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPT 474
C D SS + K V V + L+LR L+DHS+VESF GGR+ TSRVYP
Sbjct: 418 CSDARSSSLGVGLYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPI 239
Query: 473 EAIYANAGVFLFNNAT 426
A++ A +F+FNN +
Sbjct: 238 IAVFDKAHLFVFNNGS 191
Score = 57.4 bits (119), Expect(4) = 2e-033
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 1115 RRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
RR+LWGW E+DS + D +KGWA +Q IPR V LD
Sbjct: 883 RRILWGWANESDSVQQDRNKGWAGIQLIPRRVWLD 779
Score = 37.7 bits (76), Expect(4) = 2e-033
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1 / -2
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEF 855
+G LLQWPV E+E LR+++ L + G + A Q D++ F
Sbjct: 775 SGKQLLQWPVAELEKLRSHNVQLRNQKLYQGYHVEVKGITAAQADVDVTF 626
Score = 30.4 bits (60), Expect(4) = 2e-033
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1 / -2
Query: 785 GAAGRGALGPFGLFVLADRRL 723
G+ +G LGPFGL LA +L
Sbjct: 544 GSKAQGGLGPFGLLTLASEKL 482
>gb|BI122335.1|BI122335 I005P31P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 88.1 bits (186), Expect(3) = 2e-033
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = -1 / +3
Query: 557 LRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANAGVFLFNNATAARVTAT 405
+R+LVDHSIVESFAQGGR TSR+YPT+AIY +A +FLFNNAT V AT
Sbjct: 282 MRLLVDHSIVESFAQGGRRVITSRIYPTKAIYGDARLFLFNNATGVNVKAT 434
Score = 55.6 bits (115), Expect(3) = 2e-033
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = -1 / +3
Query: 710 TAVYFYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDE 570
T ++F DG + T+FC DE+RSS A+D+ V GS VPV DE
Sbjct: 132 THIFFRPVNTTDGIVETYFCADETRSSKASDVYNHVYGSTVPVFTDE 272
Score = 38.2 bits (77), Expect(3) = 2e-033
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -1 / +3
Query: 788 GGAAGRGALGPFGLFVLADRRL 723
GGA R ALGPFGL V+AD+ L
Sbjct: 57 GGAVDRSALGPFGLLVIADQTL 122
>gb|AY190017.1| Populus tomentosa cell-wall invertase gene, partial cds
Length = 518
Score = 67.5 bits (141), Expect(4) = 2e-032
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = -1 / +1
Query: 1691 QVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVW 1554
Q+Q AVPA+ +DP L W K + NP++YP P + FRDPTT W
Sbjct: 223 QIQNYAVPANSSDPYLREWVKPDDNPIVYPDPSVNASAFRDPTTAW 360
Score = 67.0 bits (140), Expect(4) = 2e-032
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = -1 / +1
Query: 1865 HVIKGHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRG 1710
+++ H+VS+DLI W L A+ P +W+D G W+GSAT LP+G + Y G
Sbjct: 46 NIVWAHSVSKDLINWESLEPAIYPSKWFDNYGCWSGSATILPNGEPVIFYTG 201
Score = 37.3 bits (75), Expect(4) = 2e-032
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -1 / +1
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDF 1386
GIA +YR+ D + LH V GTGM EC DF
Sbjct: 412 GIAYLYRSLDFKKWFKAKHPLHSVQGTGMVECPDF 516
Score = 24.0 bits (46), Expect(4) = 2e-032
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1 / +1
Query: 1538 GAWRVVIGSKDDD 1500
G WR++IGSK D
Sbjct: 370 GHWRILIGSKKRD 408
>gb|CF234201.1|CF234201 PtaJXO3G12G1214 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 722
Score = 91.8 bits (194), Expect(2) = 1e-028
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = -1 / +1
Query: 632 SSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPTEAIYANA 453
SS + V++ + + + + LS+R+LVDHS++ESFAQGGR+ TSRVYPT AIY A
Sbjct: 193 SSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSVIESFAQGGRTCITSRVYPTTAIYGAA 372
Query: 452 GVFLFNNATAARVTAT 405
+FLFNNAT A VT++
Sbjct: 373 RLFLFNNATEAGVTSS 420
Score = 56.1 bits (116), Expect(2) = 1e-028
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = -1 / +1
Query: 821 EADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTAVYF 696
E++V ++CST+GGA+ RGALGPFGL VLAD L +F
Sbjct: 10 ESNVEFSCSTNGGASHRGALGPFGLLVLADDDLSEYTPVYFF 135
>gb|DN503017.1|DN503017 X051B06.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X051B06 5', mRNA sequence
Length = 608
Score = 52.8 bits (109), Expect(5) = 7e-028
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1 / +2
Query: 1106 LWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
+WGWV E+DS D+ KGW+ LQ IPR + LD
Sbjct: 5 IWGWVNESDSIEDDMDKGWSGLQSIPRHIWLD 100
Score = 50.6 bits (104), Expect(5) = 7e-028
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = -1 / +2
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRS 501
C D+SRS+ ++ K G+ + + +SLR L+DHSI+ESF GR+
Sbjct: 455 CSDQSRSALRDEVDKTTYGAFIDIDPQRENISLRSLIDHSIIESFGGEGRA 607
Score = 40.5 bits (82), Expect(5) = 7e-028
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1 / +2
Query: 1007 KTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQL 849
++G L+QWP+EE+ L ID S+ + A Q D+E F+L
Sbjct: 101 RSGKQLVQWPIEEINKLHGKKVSFLDKKIDGESIVEVQGITAAQADVEVVFEL 259
Score = 27.6 bits (54), Expect(5) = 7e-028
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1 / +2
Query: 794 TSGGAAGRGALGPFGLFVLADRRLRRE 714
+ A+ +G LGPFGL LA + L +
Sbjct: 320 SDANASIKGRLGPFGLLTLATKDLTEQ 400
Score = 25.8 bits (50), Expect(5) = 7e-028
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +2
Query: 716 EQTAVYFYVAKGLDG 672
EQTA++F + KGL G
Sbjct: 395 EQTAIFFRIFKGLKG 439
>gb|DT514871.1|DT514871 WS02426.B21_A05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_A05 3', mRNA sequence
Length = 857
Score = 73.9 bits (155), Expect(4) = 2e-027
Identities = 33/76 (43%), Positives = 44/76 (57%)
Frame = -1 / -1
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPT 474
C D SS + K V V + L+LR L+DHS+VESF GGR+ TSRVYP
Sbjct: 413 CSDARSSSLGVGLYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPI 234
Query: 473 EAIYANAGVFLFNNAT 426
A++ A +F+FNN +
Sbjct: 233 IAVFDKAHLFVFNNGS 186
Score = 37.7 bits (76), Expect(4) = 2e-027
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -1 / -1
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEF 855
+G LLQWPV E+E LR+++ L + G + A Q D++ F
Sbjct: 770 SGKQLLQWPVAELEKLRSHNVQLRNQKLYQGYHVEVKGITAAQADVDVTF 621
Score = 36.8 bits (74), Expect(4) = 2e-027
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -1 / -1
Query: 1088 ETDSERADVSKGWASLQGIPRTVLLD 1011
E+DS + D +KGWA +Q IPR V LD
Sbjct: 851 ESDSVQQDRNKGWAGIQLIPRRVWLD 774
Score = 30.4 bits (60), Expect(4) = 2e-027
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1 / -1
Query: 785 GAAGRGALGPFGLFVLADRRL 723
G+ +G LGPFGL LA +L
Sbjct: 539 GSKAQGGLGPFGLLTLASEKL 477
>gb|BP930467.1|BP930467 BP930467 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-010_G04.r 3', mRNA sequence
Length = 670
Score = 93.2 bits (197), Expect(3) = 5e-027
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = -1 / -2
Query: 656 FCQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYP 477
F + SS + V++ + + + + LS+R+LVDHSI+ESFAQGGR+ TSRVYP
Sbjct: 480 FLCTDQSRSSVANDVRKEIYGSYVPVLEGEKLSVRILVDHSIIESFAQGGRTCITSRVYP 301
Query: 476 TEAIYANAGVFLFNNATAARVTAT 405
T AIY A +FLFNNAT A VT++
Sbjct: 300 TRAIYGAARLFLFNNATEAGVTSS 229
Score = 35.9 bits (72), Expect(3) = 5e-027
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -1 / -2
Query: 782 AAGRGALGPFGLFVLADRRLRREQTAVYF 696
A+ RGALGPFGL VLAD L +F
Sbjct: 600 ASHRGALGPFGLLVLADDDLTEYTPVYFF 514
Score = 31.3 bits (62), Expect(3) = 5e-027
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1 / -3
Query: 851 LDRRAVMSLNEADVGYNCSTSGG 783
LDR+A+ E++V ++CST+GG
Sbjct: 668 LDRKAIERTAESNVEFSCSTNGG 600
>gb|CX654517.1|CX654517 PO02011E09 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02011E09 5', mRNA sequence
Length = 426
Score = 102 bits (218), Expect(2) = 1e-025
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = -1 / +3
Query: 1178 GLRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
GLRYD+G FYASKTF+DP+K RR+LWGW E+DS + D++KGWA +Q IPR V LD
Sbjct: 24 GLRYDYGNFYASKTFFDPSKNRRILWGWANESDSVQQDMNKGWAGIQLIPRRVWLD 191
Score = 35.4 bits (71), Expect(2) = 1e-025
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1 / +3
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEF 855
+G LLQWPV E+E R+++ L + G + A Q D++ F
Sbjct: 195 SGKQLLQWPVAELEKXRSHNVQLRNQKLYQGYHVEVKGITAAQADVDVTF 344
>gb|BU897099.1|BU897099 X051B06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 585
Score = 52.8 bits (109), Expect(5) = 2e-025
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = -1 / +3
Query: 1106 LWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
+WGWV E+DS D+ KGW+ LQ IPR + LD
Sbjct: 6 IWGWVNESDSIEDDMDKGWSGLQSIPRHIWLD 101
Score = 42.3 bits (86), Expect(5) = 2e-025
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -1 / +3
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVE 525
C D+SRS+ ++ K G+ + + +SLR L+DHSI+E
Sbjct: 456 CSDQSRSALRDEVDKTTYGAFIDIDPQRENISLRSLIDHSIIE 584
Score = 40.5 bits (82), Expect(5) = 2e-025
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1 / +3
Query: 1007 KTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQL 849
++G L+QWP+EE+ L ID S+ + A Q D+E F+L
Sbjct: 102 RSGKQLVQWPIEEINKLHGKKVSFLDKKIDGESIVEVQGITAAQADVEVVFEL 260
Score = 27.6 bits (54), Expect(5) = 2e-025
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1 / +3
Query: 794 TSGGAAGRGALGPFGLFVLADRRLRRE 714
+ A+ +G LGPFGL LA + L +
Sbjct: 321 SDANASIKGRLGPFGLLTLATKDLTEQ 401
Score = 25.8 bits (50), Expect(5) = 2e-025
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1 / +3
Query: 716 EQTAVYFYVAKGLDG 672
EQTA++F + KGL G
Sbjct: 396 EQTAIFFRIFKGLKG 440
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 635,547,213
Number of Sequences: 369679
Number of extensions: 8397043
Number of successful extensions: 56138
Number of sequences better than 1.0e-020: 35
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 27125405874
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)