TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3092809.2.1
(652 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV234139.1|CV234139 WS01213.B21_M12 PT-GT-FL-A-3 Populus... 188 3e-047
gb|CK095589.1|CK095589 UA15CPD06.3pR Populus dormant cambiu... 182 1e-045
gb|CV234761.1|CV234761 WS01216.B21_D04 PT-GT-FL-A-3 Populus... 154 5e-037
gb|DT525784.1|DT525784 WS02046.C21_E14 PTxN-IB-N-A-11 Popul... 85 2e-030
gb|DT514900.1|DT514900 WS02426.B21_B10 PTxD-ICC-N-A-14 Popu... 72 5e-027
gb|DT513520.1|DT513520 WS02422.B21_E11 PTxD-ICC-N-A-14 Popu... 72 5e-027
gb|CV254153.1|CV254153 WS0224.B21_D03 PTxD-ICC-A-12 Populus... 72 5e-027
gb|CV253444.1|CV253444 WS0221.B21_P08 PTxD-ICC-A-12 Populus... 72 5e-027
gb|CV257398.1|CV257398 WS0246.B21_I23 PTxD-ICC-N-A-14 Popul... 78 5e-027
gb|DT508912.1|DT508912 WS02422.BR_E11 PTxD-ICC-N-A-14 Popul... 69 3e-026
gb|DT510276.1|DT510276 WS02426.BR_B10 PTxD-ICC-N-A-14 Popul... 69 3e-026
gb|CV256650.1|CV256650 WS0244.B21_H01 PTxD-ICC-N-A-14 Popul... 72 4e-026
gb|CV231641.1|CV231641 WS0195.B21_C07 PT-DX-N-A-10 Populus ... 71 6e-026
gb|CV266675.1|CV266675 WS0203.B21_K19 PTxN-IB-N-A-11 Populu... 74 1e-025
gb|DN499762.1|DN499762 T084E12.5pR Populus shoot meristem c... 80 1e-025
gb|DT523606.1|DT523606 WS02040.B21_C12 PTxN-IB-N-A-11 Popul... 74 1e-025
gb|DN488225.1|DN488225 R042E08.3pR Populus root cDNA librar... 72 2e-025
gb|CV271278.1|CV271278 WS0154.B21_E07 PTxN-IB-A-6 Populus t... 71 4e-025
gb|DT511857.1|DT511857 WS02417.B21_K09 PTxD-ICC-N-A-14 Popu... 71 4e-025
gb|CV250989.1|CV250989 WS0115.B21_H22 PT-P-FL-A-2 Populus t... 71 4e-025
gb|CV283544.1|CV283544 WS0187.B21_K01 PTxD-IL-N-A-9 Populus... 74 5e-025
gb|DT519739.1|DT519739 WS02443.B21_I12 PTxD-ICC-N-A-14 Popu... 71 5e-025
gb|CV266853.1|CV266853 WS02030.B21_C12 PTxN-IB-N-A-11 Popul... 72 1e-024
gb|CV272143.1|CV272143 WS0156.B21.1_M15 PTxN-IB-A-6 Populus... 72 1e-024
gb|DT489747.1|DT489747 WS02543.B21_B04 PT-MB-N-A-15 Populus... 71 2e-024
gb|DT492894.1|DT492894 WS02552.C21_M09 PT-MB-N-A-15 Populus... 71 2e-024
gb|DN490337.1|DN490337 UK117TA09.3pR Populus apical shoot c... 67 2e-024
gb|BU837391.1|BU837391 T101C08 Populus apical shoot cDNA li... 71 2e-024
gb|CN519417.1|CN519417 GQ0102.B3_D01 GQ010 Populus trichoca... 65 3e-023
gb|CK091239.1|CK091239 F064P61.3pR Populus flower cDNA libr... 64 1e-022
gb|CK091301.1|CK091301 F070P96.3pR Populus flower cDNA libr... 64 1e-022
gb|CF236643.1|CF236643 PtaJXT5D11D1107 Poplar cDNA library ... 64 8e-021
gb|CV273606.1|CV273606 WS01711.B21_J07 PTxD-NR-A-8 Populus ... 72 8e-021
>gb|CV234139.1|CV234139 WS01213.B21_M12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_M12 3', mRNA sequence
Length = 605
Score = 188 bits (405), Expect = 3e-047
Identities = 75/116 (64%), Positives = 94/116 (81%)
Frame = +2 / -3
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH YT SKHAV+GLT+SVAAELG+HG+RVNCVSPY V T+L++ HLP+ R +DAL F
Sbjct: 576 GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYGVATSLAVAHLPEDERTEDALIGF 397
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
+F+G ANL+GV+ +DVA AVL+LASDEARY+S NLM+DGGFT N++LR F
Sbjct: 396 RSFIGRNANLQGVELTVDDVANAVLFLASDEARYISGDNLMLDGGFTCTNHSLRVF 229
>gb|CK095589.1|CK095589 UA15CPD06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA15CPD06 3', mRNA sequence
Length = 824
Score = 182 bits (393), Expect = 1e-045
Identities = 73/116 (62%), Positives = 92/116 (79%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDF 229
GPH YT SKHAV+GLT+SVAAELG+HG+RVNCVSPY V T+L++ HLP+ R + AL F
Sbjct: 496 GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYGVATSLAVAHLPEDERTEGALIGF 317
Query: 230 LAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
+F+G ANL+GV+ +DVA AVL+LASDEARY+S NLM+DGGFT N++L F
Sbjct: 316 RSFIGRNANLQGVELTVDDVANAVLFLASDEARYISGDNLMLDGGFTCTNHSLHVF 149
>gb|CV234761.1|CV234761 WS01216.B21_D04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_D04 3', mRNA sequence
Length = 583
Score = 154 bits (331), Expect = 5e-037
Identities = 62/100 (62%), Positives = 80/100 (80%)
Frame = +2 / -2
Query: 98 KSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDALKDFLAFVGGEANLKGVDAM 277
+SVAAELG+HG+RVNCVSPY V T+L++ HLP+ R +DAL F +F+G ANL+GV+
Sbjct: 582 RSVAAELGKHGIRVNCVSPYGVATSLAVAHLPEDERTEDALIGFRSFIGRNANLQGVELT 403
Query: 278 PEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAF 397
+DVA AVL+LASDEARY+S NLM+DGGFT N++LR F
Sbjct: 402 VDDVANAVLFLASDEARYISGDNLMLDGGFTCTNHSLRVF 283
>gb|DT525784.1|DT525784 WS02046.C21_E14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_E14 3', mRNA sequence
Length = 918
Score = 84.9 bits (179), Expect(2) = 2e-030
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQGARADDAL 220
GPH YTASKHA+VGLTK+ A ELGR+G+RVNC+SP+ V T++ + G +D L
Sbjct: 512 GPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSMLVNAWRSGDEEEDCL 342
Score = 67.0 bits (140), Expect(2) = 2e-030
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = +2 / -2
Query: 236 FVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
FV G ANLKG D+A+A LYLASDE++YVS NL+VDGG T N
Sbjct: 296 FVRGLANLKGPTLRARDIAEAALYLASDESKYVSGHNLVVDGGITTSRN 150
>gb|DT514900.1|DT514900 WS02426.B21_B10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_B10 3', mRNA sequence
Length = 901
Score = 71.6 bits (150), Expect(2) = 5e-027
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT N + R F+
Sbjct: 352 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQNPSFRMFQ 209
Score = 69.3 bits (145), Expect(2) = 5e-027
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 535 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 413
>gb|DT513520.1|DT513520 WS02422.B21_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_E11 3', mRNA sequence
Length = 796
Score = 71.6 bits (150), Expect(2) = 5e-027
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT N + R F+
Sbjct: 273 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQNPSFRMFQ 130
Score = 69.3 bits (145), Expect(2) = 5e-027
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / -2
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 456 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 334
>gb|CV254153.1|CV254153 WS0224.B21_D03 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0224_D03 3', mRNA sequence
Length = 751
Score = 71.6 bits (150), Expect(2) = 5e-027
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -2
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT N + R F+
Sbjct: 357 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQNPSFRMFQ 214
Score = 69.3 bits (145), Expect(2) = 5e-027
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / -2
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 540 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 418
>gb|CV253444.1|CV253444 WS0221.B21_P08 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_P08 3', mRNA sequence
Length = 732
Score = 71.6 bits (150), Expect(2) = 5e-027
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -3
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT N + R F+
Sbjct: 316 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQNPSFRMFQ 173
Score = 69.3 bits (145), Expect(2) = 5e-027
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 499 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 377
>gb|CV257398.1|CV257398 WS0246.B21_I23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_I23 3', mRNA sequence
Length = 727
Score = 77.6 bits (163), Expect(2) = 5e-027
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = +2 / -1
Query: 47 TGPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
TGPH YT SKHA+VGL ++ +ELG +G+RVNC+SPY V T LS
Sbjct: 496 TGPHAYTTSKHALVGLVRAACSELGAYGIRVNCISPYGVATPLS 365
Score = 63.4 bits (132), Expect(2) = 5e-027
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +2 / -1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRA 394
ANLKG+ +A+A L+LASDE+ Y+S NL VDGGFT VN++ A
Sbjct: 310 ANLKGIVLKARHIAEAALFLASDESAYISGHNLAVDGGFTVVNHSFSA 167
>gb|DT508912.1|DT508912 WS02422.BR_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_E11 5', mRNA sequence
Length = 913
Score = 69.3 bits (145), Expect(2) = 3e-026
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / +1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 553 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 675
Score = 68.9 bits (144), Expect(2) = 3e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT + R F+
Sbjct: 736 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQKPSFRMFQ 879
>gb|DT510276.1|DT510276 WS02426.BR_B10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_B10 5', mRNA sequence
Length = 878
Score = 69.3 bits (145), Expect(2) = 3e-026
Identities = 26/41 (63%), Positives = 33/41 (80%)
Frame = +2 / +3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+GLTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 546 HAYCCSKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLA 668
Score = 68.9 bits (144), Expect(2) = 3e-026
Identities = 30/48 (62%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT + R F+
Sbjct: 729 LKGVTLQAEDVANAALYLASDEARYVSGHNLFIDGGFTIQTPSFRMFQ 872
>gb|CV256650.1|CV256650 WS0244.B21_H01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_H01 3', mRNA sequence
Length = 850
Score = 72.1 bits (151), Expect(2) = 4e-026
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNLRAFE 400
LKGV EDVA A LYLASDEARYVS NL +DGGFT N + R F+
Sbjct: 352 LKGVTLQAEDVANAALYLASDEARYVSGPNLFIDGGFTIQNPSFRMFQ 209
Score = 65.7 bits (137), Expect(2) = 4e-026
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
H Y SKHAV+ LTK+ A ELG+ G+RVNC+SPYA+ T L+
Sbjct: 535 HAYCCSKHAVLRLTKNAAVELGQFGIRVNCLSPYALATPLA 413
>gb|CV231641.1|CV231641 WS0195.B21_C07 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_C07 3', mRNA sequence
Length = 693
Score = 71.2 bits (149), Expect(2) = 6e-026
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2 / -2
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
H Y+ SK AV G+ KS+AAEL +HG+R+NC+SP+A+PT M + Q
Sbjct: 584 HTYSVSKFAVAGIVKSLAAELCKHGIRINCISPFAIPTPFVMEEMSQ 444
Score = 66.1 bits (138), Expect(2) = 6e-026
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +2 / -2
Query: 245 GEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
G L+G + P D+A A LYLASD+A+YVS NL+VDGGFT+ N
Sbjct: 398 GTGTLEGANCEPNDIANAALYLASDDAKYVSGHNLVVDGGFTSFKN 261
>gb|CV266675.1|CV266675 WS0203.B21_K19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_K19 3', mRNA sequence
Length = 876
Score = 73.9 bits (155), Expect(2) = 1e-025
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG++G+RVNCVSPYAVPT L
Sbjct: 414 HAYTSSKHGVLGLMRNTAVELGQYGIRVNCVSPYAVPTPL 295
Score = 62.0 bits (129), Expect(2) = 1e-025
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2 / -1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A LYL SDE++YVS NL+VDGGFT VN
Sbjct: 246 SNLKEAVLEAEDIAEAALYLGSDESKYVSGHNLVVDGGFTIVN 118
>gb|DN499762.1|DN499762 T084E12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T084E12 5', mRNA sequence
Length = 861
Score = 79.9 bits (168), Expect(2) = 1e-025
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = +2 / +1
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH YTASKHA+VGLTKS+ +ELG+ G+RVNC+SP AVPT L
Sbjct: 505 PHAYTASKHAIVGLTKSLCSELGQFGIRVNCISPAAVPTPL 627
Score = 56.1 bits (116), Expect(2) = 1e-025
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +2 / +3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNL 388
+ LKG A ++A LYLASD+++YVS +NL+VDGG T+ N NL
Sbjct: 687 STLKGGHA*GGRCSKAALYLASDDSKYVSGLNLVVDGGITSTNTNL 824
>gb|DT523606.1|DT523606 WS02040.B21_C12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_C12 3', mRNA sequence
Length = 794
Score = 73.9 bits (155), Expect(2) = 1e-025
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG++G+RVNCVSPYAVPT L
Sbjct: 414 HAYTSSKHGVLGLMRNTAVELGQYGIRVNCVSPYAVPTPL 295
Score = 62.0 bits (129), Expect(2) = 1e-025
Identities = 26/43 (60%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A LYL SDE++YVS NL+VDGGFT VN
Sbjct: 246 SNLKEAVLEAEDIAEAALYLGSDESKYVSGHNLVVDGGFTIVN 118
>gb|DN488225.1|DN488225 R042E08.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R042E08 3', mRNA sequence
Length = 882
Score = 72.1 bits (151), Expect(2) = 2e-025
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2 / -2
Query: 236 FVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNL 388
FV ANLK PEDVAQA LYLASD+++YVS VNL++DGG+ N +L
Sbjct: 431 FVASAANLKEAVLEPEDVAQAALYLASDDSKYVSGVNLVIDGGYNLTNPSL 279
Score = 63.4 bits (132), Expect(2) = 2e-025
Identities = 23/40 (57%), Positives = 33/40 (82%)
Frame = +2 / -2
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YTASK+A+VGL K+++ +LG+HG+RVN +SP AV T +
Sbjct: 593 HAYTASKNAIVGLAKNLSVDLGQHGIRVNSISPTAVATPM 474
>gb|CV271278.1|CV271278 WS0154.B21_E07 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_E07 3', mRNA sequence
Length = 860
Score = 70.7 bits (148), Expect(2) = 4e-025
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
H Y+ SK AV G+ KS+AAEL +HG+R+NC+SP+A+PT M + Q
Sbjct: 425 HTYSVSKFAVAGIVKSLAAELCKHGIRINCISPFAIPTPFVMEEMRQ 285
Score = 63.8 bits (133), Expect(2) = 4e-025
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
L+G + P D+A A LYLASD+A+YVS NL+VDGGFT+ N
Sbjct: 227 LEGANCEPNDIANAALYLASDDAKYVSGHNLVVDGGFTSFKN 102
>gb|DT511857.1|DT511857 WS02417.B21_K09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K09 3', mRNA sequence
Length = 749
Score = 70.7 bits (148), Expect(2) = 4e-025
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
H Y+ SK AV G+ KS+AAEL +HG+R+NC+SP+A+PT M + Q
Sbjct: 500 HTYSVSKFAVAGIVKSLAAELCKHGIRINCISPFAIPTPFVMEEMRQ 360
Score = 63.8 bits (133), Expect(2) = 4e-025
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
L+G + P D+A A LYLASD+A+YVS NL+VDGGFT+ N
Sbjct: 302 LEGANCEPNDIANAALYLASDDAKYVSGHNLVVDGGFTSFKN 177
>gb|CV250989.1|CV250989 WS0115.B21_H22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0115_H22 3', mRNA sequence
Length = 739
Score = 70.7 bits (148), Expect(2) = 4e-025
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHLPQ 196
H Y+ SK AV G+ KS+AAEL +HG+R+NC+SP+A+PT M + Q
Sbjct: 418 HTYSVSKFAVAGIVKSLAAELCKHGIRINCISPFAIPTPFVMEEMRQ 278
Score = 63.8 bits (133), Expect(2) = 4e-025
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2 / -1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
L+G + P D+A A LYLASD+A+YVS NL+VDGGFT+ N
Sbjct: 220 LEGANCEPNDIANAALYLASDDAKYVSGHNLVVDGGFTSFKN 95
>gb|CV283544.1|CV283544 WS0187.B21_K01 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_K01 3', mRNA sequence
Length = 887
Score = 73.9 bits (155), Expect(2) = 5e-025
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GLT++ A ELG+HG+RVNCVSPY V T L
Sbjct: 393 HAYTSSKHGVIGLTRNTAVELGQHGIRVNCVSPYVVLTPL 274
Score = 60.2 bits (125), Expect(2) = 5e-025
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 225 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTNVN 97
>gb|DT519739.1|DT519739 WS02443.B21_I12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_I12 3', mRNA sequence
Length = 842
Score = 70.7 bits (148), Expect(2) = 5e-025
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2 / -2
Query: 53 PHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
PH Y ASKHAVVGL K++A ELG HG+RVNC+SP+ T +
Sbjct: 556 PHPYFASKHAVVGLAKNLAVELGGHGIRVNCISPFTTATPM 434
Score = 63.4 bits (132), Expect(2) = 5e-025
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +2 / -2
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNL 388
A LK V PED+A A +YLASDE++YVS +NL++DGG++ +N L
Sbjct: 373 AILKEVLLEPEDIANAAVYLASDESKYVSGINLVIDGGYSLINPTL 236
>gb|CV266853.1|CV266853 WS02030.B21_C12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_C12 3', mRNA sequence
Length = 912
Score = 72.1 bits (151), Expect(2) = 1e-024
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG+HG+RVNCVSPYAV T +
Sbjct: 412 HAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYAVLTPM 293
Score = 60.6 bits (126), Expect(2) = 1e-024
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 244 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVN 116
>gb|CV272143.1|CV272143 WS0156.B21.1_M15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra
cDNA clone WS0156_M15 3', mRNA sequence
Length = 683
Score = 72.1 bits (151), Expect(2) = 1e-024
Identities = 26/40 (65%), Positives = 33/40 (82%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG+HG+RVNCVSPYAV T +
Sbjct: 393 HAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYAVLTPM 274
Score = 60.6 bits (126), Expect(2) = 1e-024
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 225 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVN 97
>gb|DT489747.1|DT489747 WS02543.B21_B04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02543_B04 3', mRNA sequence
Length = 894
Score = 71.2 bits (149), Expect(2) = 2e-024
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +2 / -3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG+HG+RVNCVSPY V T L
Sbjct: 394 HAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYVVLTPL 275
Score = 60.6 bits (126), Expect(2) = 2e-024
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 226 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVN 98
>gb|DT492894.1|DT492894 WS02552.C21_M09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_M09 3', mRNA sequence
Length = 846
Score = 71.2 bits (149), Expect(2) = 2e-024
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +2 / -1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG+HG+RVNCVSPY V T L
Sbjct: 435 HAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYVVLTPL 316
Score = 60.6 bits (126), Expect(2) = 2e-024
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / -1
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 267 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVN 139
>gb|DN490337.1|DN490337 UK117TA09.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK117TA09 3', mRNA
sequence
Length = 632
Score = 67.0 bits (140), Expect(2) = 2e-024
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +2 / -1
Query: 239 VGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+G NLKG ED+A+A LYLASDEA YVS +NL+VDGGF+ VN
Sbjct: 389 LGQMGNLKGKMPKVEDMARAALYLASDEANYVSGLNLVVDGGFSVVN 249
Score = 64.8 bits (135), Expect(2) = 2e-024
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +2 / -1
Query: 62 YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALS 178
Y +KH +VGL K++AAELG++G+RVNCVSP+ V T +S
Sbjct: 548 YAVTKHGIVGLAKNLAAELGQYGIRVNCVSPFGVATPMS 432
>gb|BU837391.1|BU837391 T101C08 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 589
Score = 71.2 bits (149), Expect(2) = 2e-024
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +2 / +3
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
H YT+SKH V+GL ++ A ELG+HG+RVNCVSPY V T L
Sbjct: 195 HAYTSSKHGVIGLMRNTAVELGQHGIRVNCVSPYVVLTPL 314
Score = 60.6 bits (126), Expect(2) = 2e-024
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2 / +3
Query: 251 ANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
+NLK ED+A+A L+L SDE++YVS NL+VDGGFT VN
Sbjct: 363 SNLKEAVLKAEDIAEAALFLGSDESKYVSGHNLIVDGGFTIVN 491
>gb|CN519417.1|CN519417 GQ0102.B3_D01 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_D01 5', mRNA sequence
Length = 677
Score = 64.8 bits (135), Expect(2) = 3e-023
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +2 / -3
Query: 62 YTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
Y +KH +VGL K++AAELG++G+RVNCVSPY V T +
Sbjct: 462 YAVTKHGIVGLAKNLAAELGQYGIRVNCVSPYGVATPM 349
Score = 63.4 bits (132), Expect(2) = 3e-023
Identities = 27/42 (64%), Positives = 32/42 (76%)
Frame = +2 / -3
Query: 254 NLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVN 379
NLKG ED+A A LYLASDEA +VS +NL+VDGGF+ VN
Sbjct: 288 NLKGKIPKVEDMAMAALYLASDEANFVSGMNLVVDGGFSVVN 163
>gb|CK091239.1|CK091239 F064P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F064P61 3', mRNA sequence
Length = 716
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2 / -2
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHL 190
G H Y+ASK + G+ KSVA+EL +GVR+NC+SP +PT LS+ +
Sbjct: 523 GSHSYSASKSTIPGIVKSVASELCENGVRINCISPGPIPTTLSLAQI 383
Score = 61.6 bits (128), Expect(2) = 1e-022
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +2 / -2
Query: 221 KDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
+ + V G LKG DVA+A LYLASDEA+Y++ NL+VDGG T N
Sbjct: 355 EQLIEIVNGLGKLKGAKCEEIDVAEAALYLASDEAKYITGHNLVVDGGLTCFKN 194
>gb|CK091301.1|CK091301 F070P96.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F070P96 3', mRNA sequence
Length = 715
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 24/47 (51%), Positives = 34/47 (72%)
Frame = +2 / -1
Query: 50 GPHVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHL 190
G H Y+ASK + G+ KSVA+EL +GVR+NC+SP +PT LS+ +
Sbjct: 523 GSHSYSASKSTIPGIVKSVASELCENGVRINCISPGPIPTTLSLAQI 383
Score = 61.6 bits (128), Expect(2) = 1e-022
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +2 / -1
Query: 221 KDFLAFVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
+ + V G LKG DVA+A LYLASDEA+Y++ NL+VDGG T N
Sbjct: 355 EQLIEIVNGLGKLKGAKCEEIDVAEAALYLASDEAKYITGNNLVVDGGLTCFKN 194
>gb|CF236643.1|CF236643 PtaJXT5D11D1107 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 771
Score = 63.8 bits (133), Expect(2) = 8e-021
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2 / +1
Query: 56 HVYTASKHAVVGLTKSVAAELGRHGVRVNCVSPYAVPTALSMPHL 190
H Y+ SK AVV + KS+A L +HGVR+NC+SP+A+PT M +
Sbjct: 268 HTYSVSKFAVVXIVKSLAXXLCKHGVRINCISPFAIPTPFLMEEM 402
Score = 56.1 bits (116), Expect(2) = 8e-021
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +2 / +1
Query: 257 LKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNN 382
LKG + P D+ A LYLAS +A+YV+ NL+V GGFT+ N
Sbjct: 466 LKGANCEPNDIXNAALYLASHDAKYVTGHNLVVXGGFTSFKN 591
>gb|CV273606.1|CV273606 WS01711.B21_J07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01711_J07 3', mRNA sequence
Length = 571
Score = 72.1 bits (151), Expect(2) = 8e-021
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2 / -1
Query: 236 FVGGEANLKGVDAMPEDVAQAVLYLASDEARYVSAVNLMVDGGFTAVNNNL 388
FV ANLK PEDVAQA LYLASD+++YVS VNL++DGG+ N +L
Sbjct: 433 FVASAANLKEAVLEPEDVAQAALYLASDDSKYVSGVNLVIDGGYNLTNPSL 281
Score = 47.8 bits (98), Expect(2) = 8e-021
Identities = 17/32 (53%), Positives = 26/32 (81%)
Frame = +2 / -1
Query: 80 AVVGLTKSVAAELGRHGVRVNCVSPYAVPTAL 175
A+VGL K+++ +LG+HG+RVN +SP AV T +
Sbjct: 571 AIVGLAKNLSVDLGQHGIRVNSISPTAVATPM 476
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 240,642,423
Number of Sequences: 369679
Number of extensions: 2744282
Number of successful extensions: 39975
Number of sequences better than 1.0e-020: 36
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8076627735
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)