TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library... 139 1e-032
gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus t... 139 1e-032
gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus ... 139 1e-032
gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus t... 139 1e-032
gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Popul... 139 1e-032
gb|AJ780911.1|AJ780911 AJ780911 Populus euphratica leaf 3-6... 127 4e-029
>gb|BU881394.1|BU881394 UM62TB05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 559
Score = 139 bits (299), Expect = 1e-032
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 291 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 467
>gb|CV246021.1|CV246021 WS0111.B21_A11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_A11 3', mRNA sequence
Length = 729
Score = 139 bits (299), Expect = 1e-032
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 465 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 289
>gb|CV248344.1|CV248344 WS01120.B21_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 3', mRNA sequence
Length = 698
Score = 139 bits (299), Expect = 1e-032
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = -3 / -3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 501 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 325
>gb|DT495408.1|DT495408 WS01120.BR_G03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_G03 5', mRNA sequence
Length = 904
Score = 139 bits (299), Expect = 1e-032
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = -3 / +3
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 672 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 848
>gb|DT526512.1|DT526512 WS02048.C21_D21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_D21 3', mRNA sequence
Length = 932
Score = 139 bits (299), Expect = 1e-032
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = -3 / -1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LWMVLRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY+STF YMDW
Sbjct: 536 LWMVLRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDW 360
>gb|AJ780911.1|AJ780911 AJ780911 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900014H10F1, mRNA sequence
Length = 366
Score = 127 bits (273), Expect = 4e-029
Identities = 47/55 (85%), Positives = 50/55 (90%)
Frame = -3 / -2
Query: 570 LRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDW 406
LRVL+TVEAH GY FPWS SNFLPLYGG+DFHDYHHR+LYTKSGNY STF YMDW
Sbjct: 365 LRVLETVEAHCGYHFPWSLSNFLPLYGGADFHDYHHRLLYTKSGNYLSTFTYMDW 201
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 287,462,837
Number of Sequences: 369679
Number of extensions: 3868668
Number of successful extensions: 51982
Number of sequences better than 1.0e-020: 7
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6999744037
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)