TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619146.2.1
(636 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY919618.1| Populus trichocarpa class III HD-Zip protein... 141 1e-034
gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus ... 141 1e-034
gb|AY919619.1| Populus trichocarpa class III HD-Zip protein... 139 5e-034
gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichoca... 139 5e-034
gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid lib... 139 5e-034
gb|CA929655.1|CA929655 MTU2CA.P16.G06 Aspen apex cDNA Libra... 132 8e-032
gb|AY919622.1| Populus trichocarpa class III HD-Zip protein... 132 2e-031
gb|CV251418.1|CV251418 WS0116.B21_P03 PT-P-FL-A-2 Populus t... 132 2e-031
gb|DT498993.1|DT498993 WS0116.BR_P03 PT-P-FL-A-2 Populus tr... 132 2e-031
gb|CV243268.1|CV243268 WS02518.B21_G04 PT-MB-N-A-15 Populus... 132 2e-031
gb|CK093021.1|CK093021 G104P71.3pR Populus tension wood cDN... 130 4e-031
gb|AY919623.1| Populus trichocarpa class III HD-Zip protein... 129 9e-031
gb|DT470348.1|DT470348 WS01920.C21_J19 PT-DX-N-A-10 Populus... 129 9e-031
gb|CK092653.1|CK092653 G090P56.3pR Populus tension wood cDN... 128 9e-031
gb|CV225314.1|CV225314 WS0161.B21_A09 PT-DX-A-7 Populus tri... 129 9e-031
gb|CV230298.1|CV230298 WS01916.B21_A24 PT-DX-N-A-10 Populus... 129 9e-031
gb|CF233226.1|CF233226 PtaJXO0020G2G0214 Poplar cDNA librar... 129 9e-031
gb|BI139363.1|BI139363 F130P22Y Populus flower cDNA library... 129 9e-031
gb|AY919620.1| Populus trichocarpa class III HD-Zip protein... 127 2e-030
gb|CA928716.1|CA928716 MTU6TR.P5.H12 Aspen root cDNA Librar... 127 2e-030
gb|CV272438.1|CV272438 WS0157.B21_K15 PTxN-IB-A-6 Populus t... 126 6e-030
gb|AY919621.1| Populus trichocarpa class III HD-Zip protein... 125 8e-030
gb|CF234949.1|CF234949 PtaJXT0017B11B1103 Poplar cDNA libra... 127 5e-029
gb|CF236590.1|CF236590 PtaJXT4F7F0711 Poplar cDNA library f... 127 5e-029
gb|DN493105.1|DN493105 X057H02.3pR Populus wood cDNA librar... 127 6e-029
gb|DN486748.1|DN486748 P058B11.3pR Populus petioles cDNA li... 126 1e-028
gb|BI132046.1|BI132046 G130P18Y Populus cambium cDNA librar... 122 3e-028
gb|CF235808.1|CF235808 PtaJXT0027C3C0305 Poplar cDNA librar... 117 1e-027
gb|AY919617.1| Populus trichocarpa class III HD-Zip protein... 106 2e-026
gb|CV261276.1|CV261276 WS02016.B21_F11 PTxN-IB-N-A-11 Popul... 108 3e-026
gb|DT492719.1|DT492719 WS02552.C21_B19 PT-MB-N-A-15 Populus... 108 3e-026
gb|DT470417.1|DT470417 WS01920.C21_M21 PT-DX-N-A-10 Populus... 108 3e-026
gb|CV225958.1|CV225958 WS0162.B21_O01 PT-DX-A-7 Populus tri... 108 3e-026
gb|CX660056.1|CX660056 PO01017E03 Poplar SC cDNA library Po... 107 4e-026
gb|CK095663.1|CK095663 UA19CPC09.3pR Populus dormant cambiu... 104 1e-023
gb|BU897417.1|BU897417 X057E03 Populus wood cDNA library Po... 67 1e-022
gb|CV229502.1|CV229502 WS01913.B21_I06 PT-DX-N-A-10 Populus... 106 1e-022
gb|AY919616.1| Populus trichocarpa class III HD-Zip protein... 59 4e-022
gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichoca... 104 1e-021
gb|BI127501.1|BI127501 G061P56Y Populus cambium cDNA librar... 98 3e-021
gb|AJ778339.1|AJ778339 AJ778339 Populus euphratica cambium ... 83 1e-020
>gb|AY919618.1| Populus trichocarpa class III HD-Zip protein 3 (HB3) mRNA, complete
cds
Length = 2532
Score = 141 bits (303), Expect(2) = 1e-034
Identities = 55/93 (59%), Positives = 70/93 (75%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ IMQQG AYLP G+C SSMGR
Sbjct: 2254 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMGR 2433
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA+AWKV+ DD + CLA M NW+F+*
Sbjct: 2434 PVSYEQAIAWKVLNDDNSNHCLAFMFINWSFV* 2532
Score = 24.9 bits (48), Expect(2) = 1e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 2203 DAIMCCSLKTNA 2238
>gb|CV248269.1|CV248269 WS01120.B21_A23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_A23 3', mRNA sequence
Length = 669
Score = 141 bits (303), Expect(2) = 1e-034
Identities = 55/93 (59%), Positives = 70/93 (75%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ IMQQG AYLP G+C SSMGR
Sbjct: 614 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKIMQQGYAYLPAGICVSSMGR 435
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA+AWKV+ DD + CLA M NW+F+*
Sbjct: 434 PVSYEQAIAWKVLNDDNSNHCLAFMFINWSFV* 336
Score = 24.9 bits (48), Expect(2) = 1e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -2
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 665 DAIMCCSLKTNA 630
>gb|AY919619.1| Populus trichocarpa class III HD-Zip protein 4 (HB4) mRNA, complete
cds
Length = 2535
Score = 139 bits (298), Expect(2) = 5e-034
Identities = 55/93 (59%), Positives = 69/93 (74%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ I QQG AYLP G+C SSMGR
Sbjct: 2257 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKITQQGFAYLPAGICVSSMGR 2436
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQAVAWKV+ DD + CLA M NW+F+*
Sbjct: 2437 PVSYEQAVAWKVLNDDDSNHCLAFMFMNWSFV* 2535
Score = 24.9 bits (48), Expect(2) = 5e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 2206 DAIMCCSLKTNA 2241
>gb|CN550319.1|CN550319 GQ0241.B3_E02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_E02 5', mRNA sequence
Length = 816
Score = 139 bits (298), Expect(2) = 5e-034
Identities = 55/93 (59%), Positives = 69/93 (74%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ I QQG AYLP G+C SSMGR
Sbjct: 395 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKITQQGFAYLPAGICVSSMGR 574
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQAVAWKV+ DD + CLA M NW+F+*
Sbjct: 575 PVSYEQAVAWKVLNDDDSNHCLAFMFMNWSFV* 673
Score = 24.9 bits (48), Expect(2) = 5e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +2
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 344 DAIMCCSLKTNA 379
>gb|CK099233.1|CK099233 A057P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A057P60 5', mRNA sequence
Length = 594
Score = 139 bits (298), Expect(2) = 5e-034
Identities = 55/93 (59%), Positives = 69/93 (74%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ I QQG AYLP G+C SSMGR
Sbjct: 220 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFSKITQQGFAYLPAGICVSSMGR 399
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQAVAWKV+ DD + CLA M NW+F+*
Sbjct: 400 PVSYEQAVAWKVLNDDDSNHCLAFMFMNWSFV* 498
Score = 24.9 bits (48), Expect(2) = 5e-034
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +1
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 169 DAIMCCSLKTNA 204
>gb|CA929655.1|CA929655 MTU2CA.P16.G06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 668
Score = 132 bits (282), Expect(2) = 8e-032
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ IMQQG AYLP G+C SSMGR
Sbjct: 362 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFAKIMQQGFAYLPAGICVSSMGR 183
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYEQA A +V+ DD + CLA M NW+F+*
Sbjct: 182 PVSYEQATAPQVLNDDNSNHCLAFMFINWSFV* 84
Score = 24.9 bits (48), Expect(2) = 8e-032
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / -1
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 413 DAIMCCSLKTNA 378
>gb|AY919622.1| Populus trichocarpa class III HD-Zip protein 7 (HB7) mRNA, complete
cds
Length = 2472
Score = 132 bits (283), Expect(2) = 2e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F+N AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 2194 FSNQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 2373
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 2374 PVSYERAVAWKVLNEEESAHCICFMFMNWSFV* 2472
Score = 23.1 bits (44), Expect(2) = 2e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 2149 DALVCCSLK 2175
>gb|CV251418.1|CV251418 WS0116.B21_P03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0116_P03 3', mRNA sequence
Length = 691
Score = 132 bits (283), Expect(2) = 2e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F+N AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 432 FSNQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 253
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 252 PVSYERAVAWKVLNEEESAHCICFMFMNWSFV* 154
Score = 23.1 bits (44), Expect(2) = 2e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 477 DALVCCSLK 451
>gb|DT498993.1|DT498993 WS0116.BR_P03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_P03
5', mRNA sequence
Length = 647
Score = 132 bits (283), Expect(2) = 2e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F+N AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 261 FSNQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 440
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 441 PVSYERAVAWKVLNEEESAHCICFMFMNWSFV* 539
Score = 23.1 bits (44), Expect(2) = 2e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 216 DALVCCSLK 242
>gb|CV243268.1|CV243268 WS02518.B21_G04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_G04 3', mRNA sequence
Length = 605
Score = 132 bits (283), Expect(2) = 2e-031
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
F+N AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 524 FSNQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 345
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 344 PVSYERAVAWKVLNEEESAHCICFMFMNWSFV* 246
Score = 23.1 bits (44), Expect(2) = 2e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 569 DALVCCSLK 543
>gb|CK093021.1|CK093021 G104P71.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G104P71 3', mRNA sequence
Length = 779
Score = 130 bits (278), Expect(2) = 4e-031
Identities = 51/102 (50%), Positives = 69/102 (67%)
Frame = -3 / -1
Query: 592 LKFANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSM 413
L FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSM
Sbjct: 491 LTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSM 312
Query: 412 GRQASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GSQHRSA 287
GR SYE+AVAWKV+ ++ C M NW+F+* + S+
Sbjct: 311 GRPVSYERAVAWKVLNEEENAHCFCFMFINWSFV*DLKPESS 186
Score = 24.4 bits (47), Expect(2) = 4e-031
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 529 DAIMCCSLK 503
>gb|AY919623.1| Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete
cds
Length = 2487
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 2209 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 2388
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 2389 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 2487
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 2164 DALMCCSLK 2190
>gb|DT470348.1|DT470348 WS01920.C21_J19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_J19 3', mRNA sequence
Length = 877
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 540 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 361
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 360 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 262
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 585 DALMCCSLK 559
>gb|CK092653.1|CK092653 G090P56.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G090P56 3', mRNA sequence
Length = 761
Score = 128 bits (275), Expect(2) = 9e-031
Identities = 50/100 (50%), Positives = 68/100 (68%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 548 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSMGR 369
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GSQHRSA 287
SYE+AVAWKV+ ++ C M NW+F+* + S+
Sbjct: 368 PVSYERAVAWKVLNEEENAHCFCFMFINWSFV*DLKPESS 249
Score = 24.4 bits (47), Expect(2) = 9e-031
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 593 DAIMCCSLK 567
>gb|CV225314.1|CV225314 WS0161.B21_A09 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_A09
3', mRNA sequence
Length = 760
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 540 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 361
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 360 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 262
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 585 DALMCCSLK 559
>gb|CV230298.1|CV230298 WS01916.B21_A24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01916_A24 3', mRNA sequence
Length = 639
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 540 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 361
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 360 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 262
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 585 DALMCCSLK 559
>gb|CF233226.1|CF233226 PtaJXO0020G2G0214 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 618
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 88 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 267
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 268 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 366
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 43 DALMCCSLK 69
>gb|BI139363.1|BI139363 F130P22Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 492
Score = 129 bits (277), Expect(2) = 9e-031
Identities = 49/93 (52%), Positives = 67/93 (72%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 125 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLYSEFPQIMQQGFMCLQGGICLSSMGR 304
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ + C+ M NW+F+*
Sbjct: 305 PVSYERAVAWKVLNEEESAHCICFMFINWSFV* 403
Score = 23.5 bits (45), Expect(2) = 9e-031
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 80 DALMCCSLK 106
>gb|AY919620.1| Populus trichocarpa class III HD-Zip protein 5 (HB5) mRNA, complete
cds
Length = 2556
Score = 127 bits (273), Expect(2) = 2e-030
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 2278 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSMGR 2457
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AV+WKV+ ++ C+ M NW+F+*
Sbjct: 2458 PVSYERAVSWKVLNEEENAHCICFMFINWSFV* 2556
Score = 24.4 bits (47), Expect(2) = 2e-030
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 2233 DAIMCCSLK 2259
>gb|CA928716.1|CA928716 MTU6TR.P5.H12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 551
Score = 127 bits (273), Expect(2) = 2e-030
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 382 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSMGR 203
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AV+WKV+ ++ C+ M NW+F+*
Sbjct: 202 PVSYERAVSWKVLNEEENAHCICFMFINWSFV* 104
Score = 24.4 bits (47), Expect(2) = 2e-030
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 427 DAIMCCSLK 401
>gb|CV272438.1|CV272438 WS0157.B21_K15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_K15 3', mRNA sequence
Length = 698
Score = 126 bits (269), Expect(2) = 6e-030
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ IMQQG L GG+C SSMGR
Sbjct: 593 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFSQIMQQGFTCLQGGICLSSMGR 414
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GSQHRSA 287
SYE+AVAWKV+ ++ C+ M NW+F+* + S+
Sbjct: 413 PVSYERAVAWKVLNEEENAHCICFMFINWSFV*DLKPESS 294
Score = 24.4 bits (47), Expect(2) = 6e-030
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 638 DAIMCCSLK 612
>gb|AY919621.1| Populus trichocarpa class III HD-Zip protein 6 (HB6) mRNA, complete
cds
Length = 2514
Score = 125 bits (268), Expect(2) = 8e-030
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ IMQQG L GG+C SSMGR
Sbjct: 2236 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFSQIMQQGFTCLQGGICLSSMGR 2415
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AVAWKV+ ++ C+ M NW+F+*
Sbjct: 2416 PVSYERAVAWKVLNEEENAHCICFMFINWSFV* 2514
Score = 24.4 bits (47), Expect(2) = 8e-030
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 2191 DAIMCCSLK 2217
>gb|CF234949.1|CF234949 PtaJXT0017B11B1103 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 499
Score = 127 bits (273), Expect = 5e-029
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 12 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSMGR 191
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AV+WKV+ ++ C+ M NW+F+*
Sbjct: 192 PVSYERAVSWKVLNEEENAHCICFMFINWSFV* 290
>gb|CF236590.1|CF236590 PtaJXT4F7F0711 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 697
Score = 127 bits (273), Expect = 5e-029
Identities = 48/93 (51%), Positives = 66/93 (70%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L GG+C SSMGR
Sbjct: 5 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCLQGGICLSSMGR 184
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI* 308
SYE+AV+WKV+ ++ C+ M NW+F+*
Sbjct: 185 PVSYERAVSWKVLNEEENAHCICFMFINWSFV* 283
>gb|DN493105.1|DN493105 X057H02.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X057H02 3', mRNA sequence
Length = 602
Score = 127 bits (272), Expect = 6e-029
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G++ L ++ P IMQQG L GG+C SSMGR
Sbjct: 430 FANQAGLDMLETTLVALQDITLEKIFDDHGRRTLCSEFPQIMQQGFTCLQGGICLSSMGR 251
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLANWTFI*GSQHRSA 287
SYE+AVAWKV+ ++ C M NW+F+* + S+
Sbjct: 250 PVSYERAVAWKVLNEEENAHCFCFMFINWSFV*DLKPESS 131
>gb|DN486748.1|DN486748 P058B11.3pR Populus petioles cDNA library Populus tremula cDNA
clone P058B11 3', mRNA sequence
Length = 450
Score = 126 bits (270), Expect = 1e-028
Identities = 47/89 (52%), Positives = 64/89 (71%)
Frame = -3 / -3
Query: 583 ANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQ 404
AN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 448 ANQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGRP 269
Query: 403 ASYEQAVAWKVVGDDGAPQCLALMLANWT 317
SYE+AVAWKV+ ++ + C+ M NW+
Sbjct: 268 VSYERAVAWKVLNEEESAHCICFMFMNWS 182
>gb|BI132046.1|BI132046 G130P18Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 523
Score = 122 bits (260), Expect(2) = 3e-028
Identities = 47/88 (53%), Positives = 62/88 (70%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 260 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 439
Query: 406 QASYEQAVAWKVVGDDGAPQCLALMLAN 323
SYE+AVAWKV+ + + C+ M N
Sbjct: 440 PVSYERAVAWKVLNEAKSAHCICFMFMN 523
Score = 23.1 bits (44), Expect(2) = 3e-028
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 215 DALVCCSLK 241
>gb|CF235808.1|CF235808 PtaJXT0027C3C0305 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 362
Score = 117 bits (250), Expect(2) = 1e-027
Identities = 46/76 (60%), Positives = 58/76 (76%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ +LDE G+K L ++ IMQQG AYLP G+C SSMGR
Sbjct: 125 FANQAGLDMLETTLVALQDIMLDKILDEAGRKILCSEFAKIMQQGFAYLPAGICVSSMGR 304
Query: 406 QASYEQAVAWKVVGDD 359
SY QA+AWKV+ DD
Sbjct: 305 PVSYXQAIAWKVLNDD 352
Score = 24.9 bits (48), Expect(2) = 1e-027
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +2
Query: 634 DAILCCSLKPPA 599
DAI+CCSLK A
Sbjct: 74 DAIMCCSLKTNA 109
>gb|AY919617.1| Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete
cds
Length = 2535
Score = 106 bits (226), Expect(3) = 2e-026
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + +E G++AL + +MQQG A LP G+C S+MGR
Sbjct: 2254 FANQAGLDMLETTLVALQDITLDKIFNESGRQALYTEFAKLMQQGFACLPAGICMSTMGR 2433
Query: 406 QASYEQAVAWKVV 368
SYEQAVAWKV+
Sbjct: 2434 NVSYEQAVAWKVL 2472
Score = 25.4 bits (49), Expect(3) = 2e-026
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAILCCSLK
Sbjct: 2209 DAILCCSLK 2235
Score = 24.4 bits (47), Expect(3) = 2e-026
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3 / +1
Query: 364 DDGAPQCLALMLANWTFI* 308
++ A C+A NW+F+*
Sbjct: 2479 EENAVHCIAFSFVNWSFL* 2535
>gb|CV261276.1|CV261276 WS02016.B21_F11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_F11 3', mRNA sequence
Length = 878
Score = 108 bits (230), Expect(3) = 3e-026
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G+KAL +MQQG A LP G+C S+MGR
Sbjct: 534 FANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQGFACLPAGICMSTMGR 355
Query: 406 QASYEQAVAWKVV 368
SYEQAV+WKV+
Sbjct: 354 NVSYEQAVSWKVL 316
Score = 24.0 bits (46), Expect(3) = 3e-026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -3 / -3
Query: 373 VVGDDGAPQCLALMLANWTFI*GSQ 299
+ ++ C+A NW+F+* Q
Sbjct: 318 LAAEENTVHCIAFSFVNWSFL*RPQ 244
Score = 23.5 bits (45), Expect(3) = 3e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 579 DAILCCSLE 553
>gb|DT492719.1|DT492719 WS02552.C21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_B19 3', mRNA sequence
Length = 867
Score = 108 bits (230), Expect(3) = 3e-026
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = -3 / -2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G+KAL +MQQG A LP G+C S+MGR
Sbjct: 539 FANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQGFACLPAGICMSTMGR 360
Query: 406 QASYEQAVAWKVV 368
SYEQAV+WKV+
Sbjct: 359 NVSYEQAVSWKVL 321
Score = 24.0 bits (46), Expect(3) = 3e-026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -3 / -2
Query: 373 VVGDDGAPQCLALMLANWTFI*GSQ 299
+ ++ C+A NW+F+* Q
Sbjct: 323 LAAEENTVHCIAFSFVNWSFL*RPQ 249
Score = 23.5 bits (45), Expect(3) = 3e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 584 DAILCCSLE 558
>gb|DT470417.1|DT470417 WS01920.C21_M21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_M21 3', mRNA sequence
Length = 841
Score = 108 bits (230), Expect(3) = 3e-026
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G+KAL +MQQG A LP G+C S+MGR
Sbjct: 554 FANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQGFACLPAGICMSTMGR 375
Query: 406 QASYEQAVAWKVV 368
SYEQAV+WKV+
Sbjct: 374 NVSYEQAVSWKVL 336
Score = 24.0 bits (46), Expect(3) = 3e-026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -3 / -3
Query: 373 VVGDDGAPQCLALMLANWTFI*GSQ 299
+ ++ C+A NW+F+* Q
Sbjct: 338 LAAEENTVHCIAFSFVNWSFL*RPQ 264
Score = 23.5 bits (45), Expect(3) = 3e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 599 DAILCCSLE 573
>gb|CV225958.1|CV225958 WS0162.B21_O01 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_O01
3', mRNA sequence
Length = 701
Score = 108 bits (230), Expect(3) = 3e-026
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = -3 / -1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G+KAL +MQQG A LP G+C S+MGR
Sbjct: 533 FANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQGFACLPAGICMSTMGR 354
Query: 406 QASYEQAVAWKVV 368
SYEQAV+WKV+
Sbjct: 353 NVSYEQAVSWKVL 315
Score = 24.0 bits (46), Expect(3) = 3e-026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -3 / -1
Query: 373 VVGDDGAPQCLALMLANWTFI*GSQ 299
+ ++ C+A NW+F+* Q
Sbjct: 317 LAAEENTVHCIAFSFVNWSFL*RPQ 243
Score = 23.5 bits (45), Expect(3) = 3e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -1
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 578 DAILCCSLE 552
>gb|CX660056.1|CX660056 PO01017E03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017E03 5', mRNA sequence
Length = 661
Score = 107 bits (229), Expect(3) = 4e-026
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G KAL +MQQG A LP G+C S+MGR
Sbjct: 276 FANQAGLDMLETTLVALQDITLDKIFDESGHKALFTDFAKLMQQGFACLPAGICMSTMGR 455
Query: 406 QASYEQAVAWKVV 368
SYEQAV+WKV+
Sbjct: 456 NVSYEQAVSWKVL 494
Score = 24.0 bits (46), Expect(3) = 4e-026
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -3 / +3
Query: 373 VVGDDGAPQCLALMLANWTFI*GSQ 299
+ ++ C+A NW+F+* Q
Sbjct: 492 LAAEENTVHCIAFSFVNWSFL*RPQ 566
Score = 23.5 bits (45), Expect(3) = 4e-026
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 231 DAILCCSLE 257
>gb|CK095663.1|CK095663 UA19CPC09.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA19CPC09 3', mRNA sequence
Length = 722
Score = 104 bits (222), Expect(3) = 1e-023
Identities = 41/73 (56%), Positives = 52/73 (71%)
Frame = -3 / -3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ L+ + DE G KAL +MQQG A LP G+C S+MGR
Sbjct: 507 FANQAGLDMLETTLVALQDITLDKIFDESGHKALFTDFAKLMQQGFACLPAGICMSTMGR 328
Query: 406 QASYEQAVAWKVV 368
SY QAV+WKV+
Sbjct: 327 NVSYGQAVSWKVL 289
Score = 23.5 bits (45), Expect(3) = 1e-023
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -3
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 552 DAILCCSLE 526
Score = 21.7 bits (41), Expect(3) = 1e-023
Identities = 5/20 (25%), Positives = 10/20 (50%)
Frame = -3 / -3
Query: 373 VVGDDGAPQCLALMLANWTF 314
+ ++ C+A NW+F
Sbjct: 291 LAAEENTVHCIAFSFVNWSF 232
>gb|BU897417.1|BU897417 X057E03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 67.0 bits (140), Expect(3) = 1e-022
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYL 440
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG L
Sbjct: 261 FANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFTCL 407
Score = 52.4 bits (108), Expect(3) = 1e-022
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -3 / +2
Query: 436 GGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALM 332
GG+C SSMGR SYE+AVAWKV+ ++ C M
Sbjct: 410 GGICLSSMGRPVSYERAVAWKVLNEEENAHCFCFM 514
Score = 24.4 bits (47), Expect(3) = 1e-022
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +3
Query: 634 DAILCCSLK 608
DAI+CCSLK
Sbjct: 216 DAIMCCSLK 242
>gb|CV229502.1|CV229502 WS01913.B21_I06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_I06 3', mRNA sequence
Length = 390
Score = 106 bits (226), Expect = 1e-022
Identities = 40/79 (50%), Positives = 55/79 (69%)
Frame = -3 / -2
Query: 544 VNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVG 365
V IQD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMG SYE+AVAWKV+
Sbjct: 389 VAIQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGSPVSYERAVAWKVLT 210
Query: 364 DDGAPQCLALMLANWTFI* 308
++ + C+ M NW+F+*
Sbjct: 209 EEESAHCICFMFMNWSFV* 153
>gb|AY919616.1| Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete
cds
Length = 2568
Score = 58.8 bits (122), Expect(4) = 4e-022
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = -3 / +1
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQ 455
FAN AG D+LETT+V +QD+ L+ + DE G+KAL +MQQ
Sbjct: 2278 FANQAGLDMLETTLVALQDITLDKIFDESGRKALFTDFAKLMQQ 2409
Score = 53.3 bits (110), Expect(4) = 4e-022
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -3 / +1
Query: 481 AQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVV 368
A+L G A LP G+C S+MGR SYEQAV+WKV+
Sbjct: 2392 AKLMQQANNGFACLPAGICMSTMGRNVSYEQAVSWKVL 2505
Score = 23.5 bits (45), Expect(4) = 4e-022
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / +1
Query: 634 DAILCCSLK 608
DAILCCSL+
Sbjct: 2233 DAILCCSLE 2259
Score = 23.1 bits (44), Expect(4) = 4e-022
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = -3 / +1
Query: 373 VVGDDGAPQCLALMLANWTFI* 308
+ ++ C+A NW+F+*
Sbjct: 2503 LAAEENTVHCIAFSFVNWSFL* 2568
>gb|CN549510.1|CN549510 GQ0242.B3_N23 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_N23 5', mRNA sequence
Length = 360
Score = 104 bits (221), Expect(2) = 1e-021
Identities = 41/68 (60%), Positives = 49/68 (72%)
Frame = -3 / +1
Query: 511 LDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLALM 332
LDE G+K L ++ I QQG AYLP G+C SSMGR SYEQAVAWKV+ DD + CLA M
Sbjct: 1 LDEAGRKILCSEFSKITQQGFAYLPAGICVSSMGRPVSYEQAVAWKVLNDDDSNHCLAFM 180
Query: 331 LANWTFI* 308
NW+F+*
Sbjct: 181 FMNWSFV* 204
Score = 18.5 bits (34), Expect(2) = 1e-021
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -1 / +1
Query: 285 RQTGCRLLPYYVSLVAFPLC 226
R G L YY+ + FP C
Sbjct: 223 RDLGYLLNSYYLFKL*FPSC 282
>gb|BI127501.1|BI127501 G061P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 522
Score = 98.2 bits (208), Expect(2) = 3e-021
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = -3 / +2
Query: 586 FANSAGFDILETTMVNIQDLPLEAVLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGR 407
FAN AG D+LETT+V +QD+ LE + D+ G+K L ++ P IMQQG LPGG+C SSMGR
Sbjct: 323 FANQAGLDMLETTLVALQDITLEKIFDDNGRKTLCSEFPQIMQQGFMCLPGGICLSSMGR 502
Query: 406 QASYEQ 389
SYE+
Sbjct: 503 PVSYER 520
Score = 23.1 bits (44), Expect(2) = 3e-021
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3 / +2
Query: 634 DAILCCSLK 608
DA++CCSLK
Sbjct: 278 DALVCCSLK 304
>gb|AJ778339.1|AJ778339 AJ778339 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500002F01F1, mRNA sequence
Length = 568
Score = 82.6 bits (174), Expect(3) = 1e-020
Identities = 30/69 (43%), Positives = 45/69 (65%)
Frame = -3 / +2
Query: 514 VLDEEGQKALSAQLPAIMQQGLAYLPGGVCRSSMGRQASYEQAVAWKVVGDDGAPQCLAL 335
+ D+ G+K L ++ P IMQQG L GG+C SSMG SY++A +WKV+ ++ C+
Sbjct: 224 IFDDHGRKTLCSKFPQIMQQGFT*LQGGICLSSMGTPLSYDRAESWKVMNEE*NAHCICF 403
Query: 334 MLANWTFI* 308
M NW+F+*
Sbjct: 404 MFINWSFV* 430
Score = 34.5 bits (69), Expect(3) = 1e-020
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -3 / +3
Query: 586 FANSAGFDILETTMVNIQDLPLEAVL 509
FAN A D+L+TT+V +QD+ LE L
Sbjct: 153 FANQARLDMLKTTLVALQDITLEKYL 230
Score = 21.7 bits (41), Expect(3) = 1e-020
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3 / +3
Query: 631 AILCCSLK 608
AI+CCSLK
Sbjct: 111 AIMCCSLK 134
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 258,836,035
Number of Sequences: 369679
Number of extensions: 3493601
Number of successful extensions: 45167
Number of sequences better than 1.0e-020: 47
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7831881440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)