TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Popu... 284 7e-087
gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus tricho... 277 8e-085
gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichoca... 286 2e-076
gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus... 232 3e-071
gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated wit... 190 9e-048
gb|CN523227.1|CN523227 GQ015M01.B3_J05 GQ015 Populus tricho... 163 9e-042
gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichoca... 142 1e-040
gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with... 154 1e-036
gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Popul... 153 2e-036
gb|DN492463.1|DN492463 X021D11.3pR Populus wood cDNA librar... 101 2e-035
gb|DN502505.1|DN502505 X021D11.5pR Populus wood cDNA librar... 101 2e-035
gb|BU895258.1|BU895258 X021D11 Populus wood cDNA library Po... 99 2e-034
gb|BU836172.1|BU836172 T083E02 Populus apical shoot cDNA li... 71 3e-024
gb|DN492268.1|DN492268 V059F02.3pR Populus male catkins cDN... 68 4e-022
>gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_D13 3', mRNA sequence
Length = 897
Score = 284 bits (615), Expect(2) = 7e-087
Identities = 110/148 (74%), Positives = 129/148 (87%)
Frame = +2 / -1
Query: 323 ERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSPDEHPFFSKDLPEP 502
ER+Q+CYNA TYD AF ++GF GSL+E+I++ETEKLHAQ+GRYKSPDEHPFF DLPEP
Sbjct: 897 ERSQYCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQLGRYKSPDEHPFFPDDLPEP 718
Query: 503 RLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALS 682
LPP+QYP+VLHPIADSININK +W MYF EL+PRLVKEG DGN GS+A+CDT CLQALS
Sbjct: 717 VLPPLQYPQVLHPIADSININKTVWDMYFRELIPRLVKEGDDGNCGSTAVCDTICLQALS 538
Query: 683 RRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
+RIHYG+FVAEAKF+ SP+ Y AI AQ
Sbjct: 537 KRIHYGEFVAEAKFRASPDDYEAAIRAQ 454
Score = 195 bits (420), Expect(2) = 7e-052
Identities = 92/142 (64%), Positives = 105/142 (73%)
Frame = -2 / +2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+DP LPS PS TNLG SS KY
Sbjct: 458 ALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVDPQLPSSPSLTNLGISSLKY 637
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
+ L I IESAMGC T GYC GGN GSG+S KKGCSSGLLYLP+ A SFSVSL + S
Sbjct: 638 MSHTVLFIFIESAMGCSTCGYCKGGNTGSGKSSGKKGCSSGLLYLPS*ACSFSVSLRMNS 817
Query: 402 TKDPPKPSMWKALLSYVSAL*Q 337
++P PS KA S V AL*Q
Sbjct: 818 IREPWNPSNAKASGS*VLAL*Q 883
Score = 120 bits (257), Expect = 1e-026
Identities = 56/108 (51%), Positives = 72/108 (66%)
Frame = +1 / -3
Query: 403 *IYS*RN*KAPCTGWEIQEPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLEN 582
*++ * N*KA C+ W+IQEP * F *A VAT A+P G SHC*F +Y+ + +
Sbjct: 817 *VHP*GN*KATCSAWQIQEP**TSFFPG*LT*ASVATLAVPTGTTSHC*FNKYK*DSMGH 638
Query: 583 VF**TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVS 726
VF* T S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S
Sbjct: 637 VF*RTYS*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*IS 494
Score = 105 bits (223), Expect = 6e-022
Identities = 61/144 (42%), Positives = 78/144 (54%)
Frame = +3 / -2
Query: 324 REHSFVTMLIHMIAMLSTWMVLEDLWLNI*LEKLKSSMHRLGDTRAQMSTLSFPRICLSP 503
R+ + V M + M L W L L+ L KLKS M L DTRA M+ L LS
Sbjct: 896 RDPNTVIMPVPMTLKLLHWKGSMVL*LSSSLRKLKSYMLSLADTRALMNILFSRMTYLSQ 717
Query: 504 GCHLCNTQGFCIPLLILSISTKRFGKCILMNFFQDW*KKEVMVMLDPVLFVTQPACRHSP 683
CH C+T + IPLLI I +++G CIL N F DW KKE+M ++D LFVTQ R S
Sbjct: 716 CCHPCSTHRYYIPLLIQ*I*IRQYGTCILENLFLDWSKKEMMAIVDQQLFVTQSVYRLSQ 537
Query: 684 EGSTMGSLWQRPSFKSPLKLTRQP 755
+ S M +L QR +F + R P
Sbjct: 536 KESIMENL*QRLNFGLLQMIMRLP 465
Score = 57.0 bits (118), Expect(2) = 7e-087
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +3 / -1
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE KAK FGQEV + + +G+ PVYKIRP+LVA+LY
Sbjct: 393 RVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLY 283
Score = 29.5 bits (58), Expect(2) = 7e-052
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1 / +2
Query: 874 YSSATKXXXXXXXXXXXXXLAPMFTSCPKILALASTL 764
Y SAT+ + TSCPK LA STL
Sbjct: 284 YKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTL 394
>gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L24 5', mRNA sequence
Length = 785
Score = 277 bits (600), Expect(2) = 8e-085
Identities = 107/145 (73%), Positives = 125/145 (86%)
Frame = +2 / +1
Query: 332 QFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLP 511
Q+CYNA TYD AF ++GF GSL+E+I++ETEKLHAQ+GRYKSPDEHPFF DLPEP LP
Sbjct: 1 QYCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQLGRYKSPDEHPFFPDDLPEPVLP 180
Query: 512 PMQYPRVLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRI 691
P+QYP+VLHPI DSININK +W MYF EL+PRLVKEG DGN GS+A+CDT CLQALS+RI
Sbjct: 181 PLQYPQVLHPITDSININKTVWDMYFRELIPRLVKEGDDGNCGSTAVCDTICLQALSKRI 360
Query: 692 HYGKFVAEAKFQESPEAYTPAIIAQ 766
HYG+FVAEAKF+ SP+ Y AI AQ
Sbjct: 361 HYGEFVAEAKFRASPDDYEAAIRAQ 435
Score = 193 bits (416), Expect(2) = 2e-051
Identities = 91/142 (64%), Positives = 104/142 (73%)
Frame = -2 / -1
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+DP LPS PS TNLG SS KY
Sbjct: 431 ALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVDPQLPSSPSLTNLGISSLKY 252
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYS 403
+ L I IES MGC T GYC GGN GSG+S KKGCSSGLLYLP+ A SFSVSL + S
Sbjct: 251 MSHTVLFIFIESVMGCSTCGYCKGGNTGSGKSSGKKGCSSGLLYLPS*ACSFSVSLRMNS 72
Query: 402 TKDPPKPSMWKALLSYVSAL*Q 337
++P PS KA S V AL*Q
Sbjct: 71 IREPWNPSNAKASGS*VLAL*Q 6
Score = 111 bits (238), Expect = 5e-024
Identities = 54/108 (50%), Positives = 70/108 (64%)
Frame = +1 / +3
Query: 403 *IYS*RN*KAPCTGWEIQEPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLEN 582
*++ * N*KA C+ W+IQEP * F *A VAT A+ G SH *F +Y+ + +
Sbjct: 72 *VHP*GN*KATCSAWQIQEP**TSFFPG*LT*ASVATLAVSTGTTSHY*FNKYK*DSMGH 251
Query: 583 VF**TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVS 726
VF* T S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S
Sbjct: 252 VF*RTYS*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*IS 395
Score = 57.0 bits (118), Expect(2) = 8e-085
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +3 / +1
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE KAK FGQEV + + +G+ PVYKIRP+LVA+LY
Sbjct: 496 RVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLY 606
Score = 29.5 bits (58), Expect(2) = 2e-051
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1 / -1
Query: 874 YSSATKXXXXXXXXXXXXXLAPMFTSCPKILALASTL 764
Y SAT+ + TSCPK LA STL
Sbjct: 605 YKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTL 495
>gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_L22 5', mRNA sequence
Length = 668
Score = 286 bits (618), Expect = 2e-076
Identities = 118/178 (66%), Positives = 138/178 (77%)
Frame = +2 / +3
Query: 233 ERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYI 412
ERVD S LTLD+IR+ LI EDSIIF LL RAQ+ YNA+TY+ A + F GSLV++I
Sbjct: 60 ERVDSSQTLTLDAIRKSLILQEDSIIFNLLLRAQYAYNANTYNDGALCIGSFHGSLVKFI 239
Query: 413 VRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFD 592
V+ETE+LHAQ GRY+SPDEHPFF ++LP L P QYP+VLHP ADSININK++W MYF
Sbjct: 240 VKETERLHAQAGRYRSPDEHPFFPENLPHSMLLPSQYPKVLHPCADSININKKVWNMYFT 419
Query: 593 ELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
+LLP+L K G D N GS+A+CDT CLQALSRRIHYGKFVAEAKFQES Y A Q
Sbjct: 420 DLLPKLAKAGDDDNCGSAAVCDTVCLQALSRRIHYGKFVAEAKFQESTAEYEAAXXXQ 593
Score = 193 bits (417), Expect = 1e-048
Identities = 99/167 (59%), Positives = 110/167 (65%)
Frame = -2 / -2
Query: 732 DS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILI 553
DS*NLASATNFP* IL + ACKQ VSQ A DP L S P+ N GR S KYIF LLILI
Sbjct: 559 DS*NLASATNFP**ILRDRACKQTVSQTAADPQLSSSPALANFGRRSVKYIFHTFLLILI 380
Query: 552 ESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMW 373
ESA GCKT GYC G + G+ K GCSSGLLY P AWS SVS T+ TKDP K +
Sbjct: 379 ESAQGCKTFGYCDGSSIE*GKFSGKNGCSSGLLYRPA*AWSLSVSFTMNLTKDPWKLPIH 200
Query: 372 KALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRSTLS 232
+A V AL* CALSKR ++LSS IK L+ S V + L STLS
Sbjct: 199 RAPSL*VFAL*AYCALSKRLKIILSSCKIKDFLIASRVKVWLLSTLS 59
Score = 133 bits (284), Expect = 2e-030
Identities = 68/167 (40%), Positives = 102/167 (61%)
Frame = +1 / +2
Query: 232 REG*SK*HIDIG*HQTSFD*TRRQHHIWPFGESTVLLQC*YI**QCFPHGWFWRIFG*IY 411
R+G + +D G + F+ RRQ++ PF +S V LQC ++* C + F +FG ++
Sbjct: 59 RKGGQQPDLDSGCDKEVFNFARRQYNFQPFAQSAVCLQCKHL*RWCSMYRKFPWVFGQVH 238
Query: 412 S*RN*KAPCTGWEIQEPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLENVF* 591
RN KAPC+G + + *AP L + A+ A+ KGFAS C* YQQ+ +E VF
Sbjct: 239 CKRNRKAPCSGGAV*KSG*APVLPRKFTSLNAASVAVSKGFASLC*LN*YQQKGMEYVFY 418
Query: 592 *TSSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVSRV 732
+SSKIG+ +* WI C L H+LLAG++ ++ LW++CGRG +S +
Sbjct: 419 GSSSKIGQSWR**QLWICCCLRHSLLAGSVTENSLWKICGRG*ISGI 559
Score = 123 bits (264), Expect = 1e-027
Identities = 68/168 (40%), Positives = 87/168 (51%)
Frame = -1 / -1
Query: 733 GLLKLGLCHKLPIVDPSGECLQAGCVXXXXXXXXXXXSFFHQSWKKFIKIHFPNLFVDID 554
G LK L HK IV+ + LQA CV S F Q WKK KIH P LFVDI+
Sbjct: 560 GFLKFSLGHKFSIVNSP*QSLQANCVANSSRSTIVIISSFGQFWKKIRKIHIPYLFVDIN 381
Query: 553 RISNGMQNPWVLHRWQPGLRQILGKERVLIWALVSPNLCMELFSFSNYIFNQRSSKTIHV 374
+S MQN W+L R Q +R I +ERVLI + P L ME F F +QR +T
Sbjct: 380 *VSTRMQNLWILRRKQH*VR*IFWEERVLIRTSIPPRLSMEPFGFFYNELDQRPMETSDT 201
Query: 373 ESIAIICISIVTKLCSLQKAKYDAVF*SNQNLSDAIQCQYVTSINPLY 230
S +I + IV+ L S QK + VF N L IQ Q + +++P +
Sbjct: 200 *STIVISVCIVSILRSEQKVENYTVFLQN*RLPYRIQSQGLAAVHPFF 57
Score = 114 bits (244), Expect = 7e-025
Identities = 62/151 (41%), Positives = 84/151 (55%)
Frame = +3 / +1
Query: 297 KTASYLAFWREHSFVTMLIHMIAMLSTWMVLEDLWLNI*LEKLKSSMHRLGDTRAQMSTL 476
KT + F E S +TM + +L V LW + +K K SM R G +MST
Sbjct: 124 KTV*FSTFCSERSMLTMQTLITMVLYVSEVSMGLWSSSL*KKPKGSMLRRGGIEVRMSTR 303
Query: 477 SFPRICLSPGCHLCNTQGFCIPLLILSISTKRFGKCILMNFFQDW*KKEVMVMLDPVLFV 656
S +I L+ C + Q FCI +L ISTKR+G CIL FFQ+W K E+M ++D +LF
Sbjct: 304 SSQKIYLTQCCFRRSIQRFCILVLTQLISTKRYGICILRIFFQNWPKLEMMTIVDLLLFA 483
Query: 657 TQPACRHSPEGSTMGSLWQRPSFKSPLKLTR 749
TQ ACR TM +LW R +F++PL T+
Sbjct: 484 TQFACRLCHGEFTMENLWPRLNFRNPLLSTK 576
>gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_K13 3', mRNA sequence
Length = 885
Score = 232 bits (501), Expect(2) = 3e-071
Identities = 91/117 (77%), Positives = 103/117 (88%)
Frame = +2 / -1
Query: 416 RETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDE 595
+ETEKLHAQ+GRYKSPDEHPFF DLPEP LPP+QYP+VLHPIADSININK +W MYF E
Sbjct: 885 KETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPIADSININKTVWDMYFRE 706
Query: 596 LLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
L+PRLVKEG DGN GS+A+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI AQ
Sbjct: 705 LIPRLVKEGDDGNCGSTAVCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRAQ 535
Score = 178 bits (383), Expect(2) = 8e-047
Identities = 79/115 (68%), Positives = 89/115 (77%)
Frame = -2 / +2
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+DP LPS PS TNLG SS KY
Sbjct: 539 ALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVDPQLPSSPSLTNLGISSLKY 718
Query: 582 IFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVS 418
+ L I IESAMGC T GYC GGN GSG+S KKGCSSGLLYLP+ A SFSVS
Sbjct: 719 MSHTVLFIFIESAMGCSTCGYCKGGNTGSGKSSGKKGCSSGLLYLPS*ACSFSVS 883
Score = 117 bits (250), Expect = 1e-025
Identities = 54/102 (52%), Positives = 68/102 (66%)
Frame = +1 / -3
Query: 421 N*KAPCTGWEIQEPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLENVF**TS 600
N*KA C+ W+IQEP * F *A VAT A+P G SHC*F +Y+ + +VF* T
Sbjct: 880 N*KATCSAWQIQEP**TSFFP**LT*AGVATLAVPTGTTSHC*FNKYK*DSMGHVF*RTY 701
Query: 601 SKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVS 726
S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S
Sbjct: 700 S*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*IS 575
Score = 57.0 bits (118), Expect(2) = 3e-071
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +3 / -1
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE KAK FGQEV + + +G+ PVYKIRP+LVA+LY
Sbjct: 474 RVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLY 364
Score = 29.5 bits (58), Expect(2) = 8e-047
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1 / +2
Query: 874 YSSATKXXXXXXXXXXXXXLAPMFTSCPKILALASTL 764
Y SAT+ + TSCPK LA STL
Sbjct: 365 YKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTL 475
>gb|CX173013.1|CX173013 G02_69-27_14.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 577
Score = 190 bits (410), Expect = 9e-048
Identities = 76/109 (69%), Positives = 92/109 (84%)
Frame = +2 / +3
Query: 221 IAKVERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSL 400
+ + +RVD S+ LTLD+IR LI EDSIIF LLER+Q+CYNA TYD AF ++GF GSL
Sbjct: 249 LTQKKRVDISENLTLDNIRSSLILQEDSIIFSLLERSQYCYNASTYDPEAFALEGFHGSL 428
Query: 401 VEYIVRETEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIA 547
+E+I++ETEKLHAQ+GRYKSPDEHPFF DLPEP LPP+QYP+VLHPIA
Sbjct: 429 IEFILKETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPIA 575
Score = 132 bits (283), Expect = 3e-030
Identities = 67/105 (63%), Positives = 74/105 (70%)
Frame = -2 / -1
Query: 549 SAMGCKTLGYCIGGNRGSGRSLEKKGCSSGLLYLPTCAWSFSVSLTIYSTKDPPKPSMWK 370
SAMGC T GYC GGN GSG+S KKGCSSGLLYLP+ A SFSVSL + S ++P PS K
Sbjct: 577 SAMGCSTCGYCKGGNTGSGKSSGKKGCSSGLLYLPS*ACSFSVSLRMNSIREPWNPSNAK 398
Query: 369 ALLSYVSAL*QNCALSKRPNMMLSSSLIKTCLMLSNVNMSLRSTL 235
A S V AL*Q LSKR N++LSS IK LMLS V SL STL
Sbjct: 397 ASGS*VLAL*QYWDLSKRLNIILSSCRIKELLMLSRVKFSLMSTL 263
>gb|CN523227.1|CN523227 GQ015M01.B3_J05 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_J05 5', mRNA sequence
Length = 813
Score = 163 bits (350), Expect(2) = 9e-042
Identities = 70/138 (50%), Positives = 94/138 (68%)
Frame = +2 / +3
Query: 260 TLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHA 439
TLDSIR+ LIR ED+I+F L+ERA+F N+ Y+ + + GF G LV++IV+ETE + A
Sbjct: 198 TLDSIRKSLIRQEDTIVFCLMERAKFPMNSALYNQSLDLVPGFSGPLVDFIVQETEAVQA 377
Query: 440 QVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELLPRLVKE 619
+ GRY +P+E+PFF +LP +P Y +VLH SININK IW MY ++LLP V
Sbjct: 378 KAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHTGGASININKAIWDMYLNQLLPLFVVA 557
Query: 620 GSDGNAGSSALCDTTCLQ 673
G DGN S+A D +CLQ
Sbjct: 558 GDDGNYASTAASDLSCLQ 611
Score = 27.6 bits (54), Expect(2) = 9e-042
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / +1
Query: 668 LQALSRRIHYGKFV 709
LQALS HYGKFV
Sbjct: 736 LQALSXXXHYGKFV 777
>gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_A09 5', mRNA sequence
Length = 698
Score = 142 bits (305), Expect(2) = 1e-040
Identities = 58/87 (66%), Positives = 66/87 (75%)
Frame = +2 / +2
Query: 530 VLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFV 709
VLHP ADSININK++W MYF +LLP+L K G D N GS+A+CDT CLQALSRRIHYGKFV
Sbjct: 116 VLHPCADSININKKVWNMYFTDLLPKLAKAGDDDNCGSAAVCDTVCLQALSRRIHYGKFV 295
Query: 710 AEAKFQESPEAYTPAIIAQGGGQSQDL 790
AEAKFQES Y AI Q + +L
Sbjct: 296 AEAKFQESTAEYEAAIKVQDRARLMEL 376
Score = 105 bits (224), Expect = 4e-022
Identities = 49/74 (66%), Positives = 53/74 (71%)
Frame = -2 / -3
Query: 732 DS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILI 553
DS*NLASATNFP* IL + ACKQ VSQ A DP L S P+ N GR S KYIF LLILI
Sbjct: 318 DS*NLASATNFP**ILRDRACKQTVSQTAADPQLSSSPALANFGRRSVKYIFHTFLLILI 139
Query: 552 ESAMGCKTLGYCIG 511
ESA GCKT+ + G
Sbjct: 138 ESAQGCKTINHKSG 97
Score = 44.6 bits (91), Expect(2) = 1e-040
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE K + +GQE I +++ + P+YK+ P LVA+LY
Sbjct: 413 RVEMKTRKYGQEGRITQQEDAADPIYKVEPHLVAQLY 523
>gb|CX170277.1|CX170277 G05_69-3_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 558
Score = 154 bits (330), Expect = 1e-036
Identities = 62/92 (67%), Positives = 76/92 (82%)
Frame = +2 / +3
Query: 221 IAKVERVDRSDILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSL 400
+ + +RVD S+ LTLD+IR LI EDSIIF LLER+Q+CYNA TYD AF ++GF GSL
Sbjct: 282 LTQKKRVDISENLTLDNIRSSLILQEDSIIFSLLERSQYCYNASTYDPEAFALEGFHGSL 461
Query: 401 VEYIVRETEKLHAQVGRYKSPDEHPFFSKDLP 496
+E+I++ETEKLHAQ+GRYKSPDEHPFF DLP
Sbjct: 462 IEFILKETEKLHAQLGRYKSPDEHPFFPDDLP 557
>gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_L22 3', mRNA sequence
Length = 752
Score = 153 bits (328), Expect = 2e-036
Identities = 64/123 (52%), Positives = 82/123 (66%)
Frame = +2 / -1
Query: 422 TEKLHAQVGRYKSPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELL 601
TE + A+ GRY +P+E+PFF +LP +P Y +VLH SININK IW MY ++LL
Sbjct: 752 TEAVQAKAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHSGGASININKAIWDMYLNQLL 573
Query: 602 PRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQGGGQS 781
P V G DGN S+A D +CLQALSRRIHYGKFVAE KF+++P+ Y P I A+ +
Sbjct: 572 PLFVVAGDDGNYASTAASDLSCLQALSRRIHYGKFVAEIKFRDAPQDYEPPIRAKDADEL 393
Query: 782 QDL 790
L
Sbjct: 392 MKL 384
Score = 89.5 bits (189), Expect(3) = 9e-022
Identities = 44/78 (56%), Positives = 53/78 (67%)
Frame = -2 / +1
Query: 762 AIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALDPALPSLPSFTNLGRSSSKY 583
A + G *+ G S NL SATNFP*WILLE ACKQ+ S A+D LPS P+ TN G S +Y
Sbjct: 412 ARIGGS*SCGASLNLISATNFP*WILLERACKQLRSLAAVDA*LPSSPATTNKGSSWFRY 591
Query: 582 IFQISLLILIESAMGCKT 529
I I+L +LIE+ CKT
Sbjct: 592 ISHIALFMLIEAPPECKT 645
Score = 27.6 bits (54), Expect(3) = 9e-022
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 510 GNRGSGRSLEKKGCSSGLLYLPTCA 436
G G+ KKG SSG YLP A
Sbjct: 664 GTNEGGKLSGKKGFSSGFTYLPALA 738
Score = 24.0 bits (46), Expect(3) = 9e-022
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1 / +1
Query: 802 TSCPKILALASTL 764
TSCPK +A STL
Sbjct: 310 TSCPKTIAFFSTL 348
>gb|DN492463.1|DN492463 X021D11.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021D11 3', mRNA sequence
Length = 705
Score = 101 bits (216), Expect(2) = 2e-035
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +2 / -1
Query: 266 DSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQV 445
D+IR LI EDSIIF LLER+Q+CYNA TYD AF ++GF GSL+E+I++ETEKLHAQV
Sbjct: 705 DNIRSSLILQEDSIIFSLLERSQYCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQV 526
Score = 67.5 bits (141), Expect(2) = 2e-035
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +2 / -2
Query: 443 VGRYKSPDEHPFFSKDLPEPRLPPMQYPRV 532
+GRYKSPDEHPFF DLPEP LPP+QYP+V
Sbjct: 434 LGRYKSPDEHPFFPDDLPEPVLPPLQYPQV 345
>gb|DN502505.1|DN502505 X021D11.5pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X021D11 5', mRNA sequence
Length = 694
Score = 101 bits (216), Expect(2) = 2e-035
Identities = 41/60 (68%), Positives = 50/60 (83%)
Frame = +2 / +1
Query: 266 DSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQV 445
D+IR LI EDSIIF LLER+Q+CYNA TYD AF ++GF GSL+E+I++ETEKLHAQV
Sbjct: 1 DNIRSSLILQEDSIIFSLLERSQYCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQV 180
Score = 67.5 bits (141), Expect(2) = 2e-035
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +2 / +2
Query: 443 VGRYKSPDEHPFFSKDLPEPRLPPMQYPRV 532
+GRYKSPDEHPFF DLPEP LPP+QYP+V
Sbjct: 272 LGRYKSPDEHPFFPDDLPEPVLPPLQYPQV 361
>gb|BU895258.1|BU895258 X021D11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 718
Score = 99.1 bits (210), Expect(2) = 2e-034
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2 / +2
Query: 266 DSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNAFHMDGFGGSLVEYIVRETEKLHAQV 445
D+I LI EDSIIF LLER+Q+CYNA TYD AF ++GF GSL+E+I++ETEKLHAQV
Sbjct: 8 DNITSSLILQEDSIIFSLLERSQYCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQV 187
Score = 67.5 bits (141), Expect(2) = 2e-034
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = +2 / +3
Query: 443 VGRYKSPDEHPFFSKDLPEPRLPPMQYPRV 532
+GRYKSPDEHPFF DLPEP LPP+QYP+V
Sbjct: 279 LGRYKSPDEHPFFPDDLPEPVLPPLQYPQV 368
>gb|BU836172.1|BU836172 T083E02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 583
Score = 71.2 bits (149), Expect(3) = 3e-024
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = +2 / +2
Query: 644 SALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 766
+A+CDT CLQALS+RIHYG++VAEAKF+ SP+ Y AI AQ
Sbjct: 32 TAVCDTICLQALSKRIHYGEYVAEAKFRASPDDYEAAIRAQ 154
Score = 55.6 bits (115), Expect(3) = 3e-024
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3 / +2
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE KAK FGQEV + + +G+ PVYKI+P+LVA+LY
Sbjct: 215 RVEMKAKAFGQEVTMEGEIDGTDPVYKIKPTLVADLY 325
Score = 23.1 bits (44), Expect(3) = 3e-024
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / +3
Query: 614 KEGSDGNAGS 643
KEG DGN GS
Sbjct: 3 KEGDDGNCGS 32
>gb|DN492268.1|DN492268 V059F02.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V059F02 3', mRNA sequence
Length = 618
Score = 68.0 bits (142), Expect(2) = 4e-022
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +2 / -1
Query: 650 LCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIA 763
+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI A
Sbjct: 618 VCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRA 505
Score = 57.0 bits (118), Expect(2) = 4e-022
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +3 / -1
Query: 765 KVEAKAKIFGQEVNIGAKDNGSPPVYKIRPSLVAELY 875
+VE KAK FGQEV + + +G+ PVYKIRP+LVA+LY
Sbjct: 441 RVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLY 331
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 460,878,261
Number of Sequences: 369679
Number of extensions: 7116432
Number of successful extensions: 53628
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11853417520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)