TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinu... 111 6e-033
gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pin... 111 6e-033
gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo li... 111 6e-033
gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo li... 111 6e-033
gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response R... 111 6e-033
gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control P... 108 4e-032
gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism... 108 4e-032
gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library P... 108 4e-032
gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo li... 104 6e-032
gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pin... 104 6e-032
gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo li... 104 6e-032
gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch... 104 6e-032
gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response R... 104 2e-031
gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus pota... 101 4e-031
gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus cal... 101 4e-031
gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side ... 103 1e-030
gb|BG317911.1|BG317911 NXPV_007_B08_F NXPV (Nsf Xylem Plani... 97 1e-028
gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch... 104 4e-028
gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciat... 104 9e-027
gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Plani... 111 8e-024
gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pin... 100 6e-023
gb|BI077254.1|BI077254 NXPV_094_G08_F NXPV (Nsf Xylem Plani... 77 8e-023
gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered lo... 104 7e-022
>gb|DR069285.1|DR069285 RTDK1_6_E03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_E03_A029 3', mRNA sequence
Length = 879
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / -1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 432 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 253
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 252 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 109
Score = 50.1 bits (103), Expect(2) = 6e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / -1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 564 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 460
>gb|CO162312.1|CO162312 FLD1_34_B10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_B10_A029 5', mRNA sequence
Length = 827
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 459 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 638
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 639 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 782
Score = 50.1 bits (103), Expect(2) = 6e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 327 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 431
>gb|DT632919.1|DT632919 EST1147850 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFP19 3' end, mRNA sequence
Length = 791
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 382 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 561
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 562 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 705
Score = 50.1 bits (103), Expect(2) = 6e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 250 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYD 354
>gb|DR685785.1|DR685785 EST1075862 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB785 3' end, mRNA sequence
Length = 784
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / +2
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 374 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 553
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 554 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 697
Score = 50.1 bits (103), Expect(2) = 6e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 242 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYD 346
>gb|DR095848.1|DR095848 STRR1_24_B06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_24_B06_A033 3', mRNA sequence
Length = 779
Score = 111 bits (236), Expect(2) = 6e-033
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / -1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 332 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 153
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 152 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 9
Score = 50.1 bits (103), Expect(2) = 6e-033
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / -1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 464 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYD 360
>gb|CF667838.1|CF667838 RTCNT1_32_G06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_32_G06_A029 5', mRNA sequence
Length = 781
Score = 108 bits (230), Expect(2) = 4e-032
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 414 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 593
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
IWSMY+D LLPR GDDGNY
Sbjct: 594 LIWSMYYDSLLPRFATTGDDGNY 662
Score = 50.1 bits (103), Expect(2) = 4e-032
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 282 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 386
>gb|CO197205.1|CO197205 GEO1_4_C10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_C10_A029 5', mRNA sequence
Length = 772
Score = 108 bits (230), Expect(2) = 4e-032
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +1 / +2
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 491 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 670
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
IWSMY+D LLPR GDDGNY
Sbjct: 671 LIWSMYYDSLLPRFATTGDDGNY 739
Score = 50.1 bits (103), Expect(2) = 4e-032
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 359 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 463
>gb|AI813035.1|AI813035 20A4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 526
Score = 108 bits (230), Expect(2) = 4e-032
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 256 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 435
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
IWSMY+D LLPR GDDGNY
Sbjct: 436 LIWSMYYDSLLPRFATTGDDGNY 504
Score = 50.1 bits (103), Expect(2) = 4e-032
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 124 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 228
>gb|DT631887.1|DT631887 EST1146818 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD90 3' end, mRNA sequence
Length = 842
Score = 104 bits (222), Expect(2) = 6e-032
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 181 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 360
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 361 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 498
Score = 53.3 bits (110), Expect(2) = 6e-032
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 43 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 147
>gb|CO165801.1|CO165801 FLD1_57_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_E04_A029 3', mRNA sequence
Length = 788
Score = 104 bits (222), Expect(2) = 6e-032
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / -3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 561 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 382
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 381 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 244
Score = 53.3 bits (110), Expect(2) = 6e-032
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / -3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 699 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 595
>gb|DR684091.1|DR684091 EST1074168 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO79 3' end, mRNA sequence
Length = 780
Score = 104 bits (222), Expect(2) = 6e-032
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 142 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 321
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 322 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 459
Score = 53.3 bits (110), Expect(2) = 6e-032
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 4 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 108
>gb|DR024254.1|DR024254 STRS1_63_D04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_D04_A034 5', mRNA sequence
Length = 749
Score = 104 bits (222), Expect(2) = 6e-032
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 384 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 563
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 564 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRKIHYGKFVA 701
Score = 53.3 bits (110), Expect(2) = 6e-032
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 246 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 350
>gb|DR100836.1|DR100836 STRR1_68_D11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_68_D11_A033 5', mRNA sequence
Length = 735
Score = 104 bits (222), Expect(2) = 2e-031
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 138 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 317
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 318 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 455
Score = 51.5 bits (106), Expect(2) = 2e-031
Identities = 18/34 (52%), Positives = 28/34 (82%)
Frame = +1 / +3
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 3 TLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 104
>gb|CO366854.1|CO366854 RTK1_30_C03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C03_A029 5', mRNA sequence
Length = 837
Score = 101 bits (216), Expect(2) = 4e-031
Identities = 40/81 (49%), Positives = 52/81 (64%)
Frame = +1 / +3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 573 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 752
Query: 514 WSMYFDELLPRLXKXGDDGNY 576
W+MYF ELLPR+ GDDGNY
Sbjct: 753 WTMYFVELLPRIAAVGDDGNY 815
Score = 53.3 bits (110), Expect(2) = 4e-031
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 435 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 539
>gb|DR054830.1|DR054830 RTCA1_19_G05.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_19_G05_A029 5', mRNA sequence
Length = 701
Score = 101 bits (216), Expect(2) = 4e-031
Identities = 40/81 (49%), Positives = 52/81 (64%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 425 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 604
Query: 514 WSMYFDELLPRLXKXGDDGNY 576
W+MYF ELLPR+ GDDGNY
Sbjct: 605 WTMYFVELLPRIAAVGDDGNY 667
Score = 53.3 bits (110), Expect(2) = 4e-031
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LDT+R+ L R+ED+I+F+L+ERA++ N P YD
Sbjct: 287 LTLDTIRESLIRQEDSIIFNLLERAQFCFNAPTYD 391
>gb|BQ701847.1|BQ701847 NXSI_121_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_121_C04 5' similar to Arabidopsis thaliana
sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 103 bits (220), Expect(2) = 1e-030
Identities = 49/108 (45%), Positives = 64/108 (59%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 174 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 353
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LL GDDGNY S +Y +VA
Sbjct: 354 LIWSMYYDSLLXXXAXTGDDGNYGSTAVCDTMXXXXLSKXXHYGKFVA 497
Score = 50.1 bits (103), Expect(2) = 1e-030
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 42 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNDPTYD 146
>gb|BG317911.1|BG317911 NXPV_007_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_B08 5' similar to Arabidopsis
thaliana sequence At3g29200 chorismate mutase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 96.8 bits (205), Expect(2) = 1e-028
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+ + +K GRY+ E PFF + L PP + + PAA +N+N
Sbjct: 283 SGSLIEFILRETXXLHAKVGRYKXXDEHPFFPDALXXPLXPPLQYPTXXAPAAQXININK 462
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
IWSMY+D LLPR GDDGNY
Sbjct: 463 LIWSMYYDSLLPRXATTGDDGNY 531
Score = 50.1 bits (103), Expect(2) = 1e-028
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 151 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 255
>gb|DR024132.1|DR024132 STRS1_62_C08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_C08_A034 5', mRNA sequence
Length = 766
Score = 104 bits (222), Expect(2) = 4e-028
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 116 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 295
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 296 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 433
Score = 40.5 bits (82), Expect(2) = 4e-028
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1 / +2
Query: 220 LTREEDTIVFSLIERAKYPLNRPAYD 297
L R+ED+I+F+L+ERA++ N P YD
Sbjct: 5 LIRQEDSIIFNLLERAQFCFNAPTYD 82
>gb|BX253798.1|BX253798 BX253798 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088F04, mRNA sequence
Length = 660
Score = 104 bits (222), Expect(2) = 9e-027
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 101 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 280
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 281 WTMYFVELLPRIAAMGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 418
Score = 35.9 bits (72), Expect(2) = 9e-027
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1 / +2
Query: 232 EDTIVFSLIERAKYPLNRPAYD 297
ED+I+F+L+ERA++ N P YD
Sbjct: 2 EDSIIFNLLERAQFCFNAPTYD 67
>gb|BG317820.1|BG317820 NXPV_006_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_006_B01 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 600
Score = 111 bits (236), Expect = 8e-024
Identities = 45/108 (41%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 9 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 188
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IWSMY+D LLPR GDDGNY S +Y +VA
Sbjct: 189 LIWSMYYDSLLPRFATTGDDGNYGSTAVCDTMCLQALSKRIHYGKFVA 332
>gb|CO165812.1|CO165812 FLD1_57_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_57_F04_A029 3', mRNA sequence
Length = 527
Score = 99.6 bits (211), Expect(2) = 6e-023
Identities = 42/106 (39%), Positives = 57/106 (53%)
Frame = +1 / -3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S E +E+E + S+ GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 432 SLNEFMFKETEKLHSEVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 253
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 252 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 115
Score = 28.1 bits (55), Expect(2) = 6e-023
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1 / -3
Query: 238 TIVFSLIERAKYPLNRPAYD 297
+I+F L+ERA++ + P YD
Sbjct: 525 SIIFDLLERAQFCFDAPTYD 466
>gb|BI077254.1|BI077254 NXPV_094_G08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_094_G08 5' similar to Arabidopsis
thaliana sequence At1g69370 chorismate mutase like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 510
Score = 77.1 bits (162), Expect(2) = 8e-023
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S +E +RE+E + +K GRY+S E PFF +P L PP + L+PAA S+N+N
Sbjct: 283 SGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININK 462
Query: 508 AIWSMYFD 531
IW M +D
Sbjct: 463 LIWXMXYD 486
Score = 50.1 bits (103), Expect(2) = 8e-023
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L+LD++R L R+ED+I+F+L+ERA+Y N P YD
Sbjct: 151 LTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYD 255
>gb|CF475712.1|CF475712 RTWW2_11_F05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_F05_A021 5', mRNA sequence
Length = 710
Score = 104 bits (222), Expect = 7e-022
Identities = 44/106 (41%), Positives = 58/106 (54%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E+E + SK GRY+S E PFF + L PP + L+PAA ++N+N I
Sbjct: 74 SLVEFMFKETEKLHSKVGRYKSPDEHPFFPEDLQEPLLPPLQYPQVLHPAASNININKEI 253
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W+MYF ELLPR+ GDDGNY S +Y +VA
Sbjct: 254 WTMYFVELLPRIAAVGDDGNYGSTAVCDVACLQAISRRIHYGKFVA 391
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 275,474,892
Number of Sequences: 355925
Number of extensions: 3254107
Number of successful extensions: 28020
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10999199580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)