TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus ad... 167 2e-067
gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response R... 167 2e-067
gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine r... 167 2e-067
gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, ... 149 5e-063
gb|CF478049.1|CF478049 RTWW3_17_E06.g1_A022 Well-watered lo... 107 1e-056
gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered lob... 167 3e-052
gb|BX680621.1|BX680621 BX680621 RS Pinus pinaster cDNA clon... 113 4e-051
gb|BM158786.1|BM158786 NXLV_038_D04_F NXLV (Nsf Xylem Late ... 105 5e-048
gb|BX254061.1|BX254061 BX254061 Pinus pinaster differenciat... 167 4e-041
gb|DR110236.1|DR110236 RTS1_9_E09.g1_A029 Roots minus sulfu... 116 3e-038
gb|CF392847.1|CF392847 RTDR3_19_G07.g1_A022 Loblolly pine r... 110 4e-036
gb|CO367342.1|CO367342 RTK1_33_E12.g1_A029 Roots minus pota... 107 1e-035
gb|DR384820.1|DR384820 RTHG1_4_F11.g1_A029 Roots plus added... 107 1e-035
gb|BX254250.1|BX254250 BX254250 Pinus pinaster differenciat... 147 7e-035
gb|DT625230.1|DT625230 EST1159505 Sequencing ESTs from lobl... 108 1e-034
gb|CF387362.1|CF387362 RTDR1_12_G11.g1_A015 Loblolly pine r... 108 1e-034
gb|DN450504.1|DN450504 EST946303 Sequencing ESTs from loblo... 108 1e-034
gb|CV031904.1|CV031904 RTNACL1_4_B04.g1_A029 Roots plus add... 108 2e-034
gb|DR078570.1|DR078570 RTFEPL1_5_C05.g1_A029 Roots plus add... 105 3e-034
gb|DR092668.1|DR092668 STRR1_2_H07.g1_A033 Stem Response Re... 107 6e-034
gb|DR120323.1|DR120323 RTMG1_29_A06.b1_A029 Roots minus mag... 103 6e-034
gb|CO171061.1|CO171061 NDL1_18_F06.g1_A029 Needles control ... 107 6e-034
gb|CF471103.1|CF471103 RTDS1_16_C03.g1_A015 Drought-stresse... 108 3e-033
gb|CX648371.1|CX648371 COLD1_28_F03.b1_A029 Root cold Pinus... 100 3e-033
gb|CO367804.1|CO367804 RTK1_36_F02.g1_A029 Roots minus pota... 107 2e-032
gb|CF390662.1|CF390662 RTDR2_20_D03.g1_A021 Loblolly pine r... 107 3e-032
gb|CV032789.1|CV032789 RTNACL1_18_H01.b1_A029 Roots plus ad... 103 7e-032
gb|CO167692.1|CO167692 FLD1_70_C03.g1_A029 Root flooded Pin... 98 2e-030
gb|DR385454.1|DR385454 RTHG1_8_F06.g1_A029 Roots plus added... 95 3e-030
gb|DR091559.1|DR091559 RTAL1_22_A11.g1_A029 Roots plus adde... 94 6e-030
gb|CO166712.1|CO166712 FLD1_64_A09.b1_A029 Root flooded Pin... 94 8e-030
gb|DR012414.1|DR012414 HEAT1_12_E02.g1_A029 Root at 37 C fo... 86 7e-029
gb|CO363075.1|CO363075 RTK1_7_B06.g1_A029 Roots minus potas... 108 3e-028
gb|CO197528.1|CO197528 GEO1_7_D07.b1_A029 Root gravitropism... 105 5e-028
gb|DR177641.1|DR177641 RTMNUT1_6_B12.g1_A029 Roots minus mi... 80 5e-028
gb|CF474025.1|CF474025 RTWW2_18_D06.b1_A021 Well-watered lo... 108 1e-026
gb|DR682638.1|DR682638 EST1072713 Normalized pine embryo li... 106 3e-026
gb|CO363787.1|CO363787 RTK1_11_G02.g1_A029 Roots minus pota... 105 5e-026
gb|CO170548.1|CO170548 NDL1_15_B11.b1_A029 Needles control ... 84 5e-026
gb|DR384632.1|DR384632 RTHG1_3_B11.g1_A029 Roots plus added... 105 2e-025
gb|CF478553.1|CF478553 RTWW3_20_G02.g1_A022 Well-watered lo... 76 2e-025
gb|DR071708.1|DR071708 RTDK1_21_D03.g1_A029 Roots, dark Pin... 105 2e-025
gb|CF476506.1|CF476506 RTWW3_1_C09.g1_A022 Well-watered lob... 113 8e-025
gb|BX249072.1|BX249072 BX249072 Pinus pinaster differenciat... 111 3e-024
gb|CO366574.1|CO366574 RTK1_28_E03.g1_A029 Roots minus pota... 87 4e-024
gb|CX713678.1|CX713678 RTPQ1_11_H04.g1_A032 Roots treated w... 82 4e-024
gb|DR687035.1|DR687035 EST1077113 Normalized pine embryo li... 110 8e-024
gb|DR167860.1|DR167860 RTPHOS1_21_D01.g1_A029 Roots minus p... 108 3e-023
gb|BX250922.1|BX250922 BX250922 Pinus pinaster differenciat... 108 4e-023
gb|BG318327.1|BG318327 NXPV_012_C10_F NXPV (Nsf Xylem Plani... 108 4e-023
gb|BX784100.1|BX784100 BX784100 Pinus pinaster differenciat... 108 4e-023
gb|DR079387.1|DR079387 RTFEPL1_11_A03.b1_A029 Roots plus ad... 108 4e-023
gb|DR094045.1|DR094045 STRR1_12_C07.b1_A033 Stem Response R... 108 4e-023
gb|DR025171.1|DR025171 STRS1_70_C04.b1_A034 Shoot tip pitch... 107 7e-023
gb|CF477771.1|CF477771 RTWW3_9_G12.g1_A022 Well-watered lob... 66 1e-022
gb|DR078785.1|DR078785 RTFEPL1_6_G09.g1_A029 Roots plus add... 81 3e-022
gb|DR119629.1|DR119629 RTMG1_24_A08.g1_A029 Roots minus mag... 66 6e-022
gb|CF470628.1|CF470628 RTDS1_13_E12.g1_A015 Drought-stresse... 103 1e-021
gb|DR092590.1|DR092590 STRR1_2_H07.b1_A033 Stem Response Re... 63 8e-021
>gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_A03_A029 5', mRNA sequence
Length = 843
Score = 167 bits (360), Expect(2) = 2e-067
Identities = 70/97 (72%), Positives = 83/97 (85%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 273 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 452
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+E+V + R DG+AK+ GT+ACV A++ITLYKGP I
Sbjct: 453 GLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPI 563
Score = 108 bits (230), Expect(2) = 2e-067
Identities = 36/47 (76%), Positives = 46/47 (97%)
Frame = +1 / +3
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+NWTLGC+YL+G+CL+WSGW+V+QAPVLKKYPARL+VTS+TC FG+I
Sbjct: 645 ENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGII 785
Score = 86.8 bits (183), Expect(2) = 4e-029
Identities = 47/97 (48%), Positives = 55/97 (56%)
Frame = -3 / -3
Query: 341 GPL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVGDVL 162
GPL* V+ A T A+VP L AM KV+AGTEF MADANVG V
Sbjct: 556 GPL*RVIIVAPPTQATVPTILANPSSLLMWTSSSPRIAAMIKVIAGTEFCMADANVGVV* 377
Query: 161 SRPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
+P R*NP FAV+P +A +KN T RVS G SF +
Sbjct: 376 YKPSR*NP*FAVIPHNASRKN*TRNERVSGGRSFFSR 266
Score = 61.1 bits (127), Expect(2) = 4e-029
Identities = 28/44 (63%), Positives = 30/44 (68%)
Frame = -3 / -3
Query: 545 PKKQV*EVTASRAGYFFSTGACSTSQPDHDRQCPIRYTXPSVQF 414
PK+ V +VT RAGYFFSTGA T QPD RQ P R PSVQF
Sbjct: 778 PKRHVNDVTERRAGYFFSTGA*MTIQPDQARQFPRR*IQPSVQF 647
>gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C07_A033 5', mRNA sequence
Length = 838
Score = 167 bits (360), Expect(2) = 2e-067
Identities = 70/97 (72%), Positives = 83/97 (85%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 294 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 473
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+E+V + R DG+AK+ GT+ACV A++ITLYKGP I
Sbjct: 474 GLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPI 584
Score = 108 bits (230), Expect(2) = 2e-067
Identities = 36/47 (76%), Positives = 46/47 (97%)
Frame = +1 / +3
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+NWTLGC+YL+G+CL+WSGW+V+QAPVLKKYPARL+VTS+TC FG+I
Sbjct: 666 ENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGII 806
Score = 86.8 bits (183), Expect(2) = 4e-029
Identities = 47/97 (48%), Positives = 55/97 (56%)
Frame = -3 / -1
Query: 341 GPL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVGDVL 162
GPL* V+ A T A+VP L AM KV+AGTEF MADANVG V
Sbjct: 577 GPL*RVIIVAPPTQATVPTILANPSSLLMWTSSSPRIAAMIKVIAGTEFCMADANVGVV* 398
Query: 161 SRPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
+P R*NP FAV+P +A +KN T RVS G SF +
Sbjct: 397 YKPSR*NP*FAVIPHNASRKN*TRNERVSGGRSFFSR 287
Score = 61.1 bits (127), Expect(2) = 4e-029
Identities = 28/44 (63%), Positives = 30/44 (68%)
Frame = -3 / -1
Query: 545 PKKQV*EVTASRAGYFFSTGACSTSQPDHDRQCPIRYTXPSVQF 414
PK+ V +VT RAGYFFSTGA T QPD RQ P R PSVQF
Sbjct: 799 PKRHVNDVTERRAGYFFSTGA*MTIQPDQARQFPRR*IQPSVQF 668
>gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_A06_A021 3', mRNA
sequence
Length = 668
Score = 167 bits (360), Expect(2) = 2e-067
Identities = 70/97 (72%), Positives = 83/97 (85%)
Frame = +1 / -2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 520 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 341
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+E+V + R DG+AK+ GT+ACV A++ITLYKGP I
Sbjct: 340 GLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPI 230
Score = 108 bits (230), Expect(2) = 2e-067
Identities = 36/47 (76%), Positives = 46/47 (97%)
Frame = +1 / -2
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+NWTLGC+YL+G+CL+WSGW+V+QAPVLKKYPARL+VTS+TC FG+I
Sbjct: 148 ENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGII 8
Score = 86.8 bits (183), Expect(2) = 4e-029
Identities = 47/97 (48%), Positives = 55/97 (56%)
Frame = -3 / +3
Query: 341 GPL*SVMTDAXATHASVPATLXXXXXXXXXXXXXXXXXAMAKVMAGTEFWMADANVGDVL 162
GPL* V+ A T A+VP L AM KV+AGTEF MADANVG V
Sbjct: 237 GPL*RVIIVAPPTQATVPTILANPSSLLMWTSSSPRIAAMIKVIAGTEFCMADANVGVV* 416
Query: 161 SRPRR*NPWFAVMPQSARKKNWTTKLRVSCGLSFLQQ 51
+P R*NP FAV+P +A +KN T RVS G SF +
Sbjct: 417 YKPSR*NP*FAVIPHNASRKN*TRNERVSGGRSFFSR 527
Score = 61.1 bits (127), Expect(2) = 4e-029
Identities = 28/44 (63%), Positives = 30/44 (68%)
Frame = -3 / +3
Query: 545 PKKQV*EVTASRAGYFFSTGACSTSQPDHDRQCPIRYTXPSVQF 414
PK+ V +VT RAGYFFSTGA T QPD RQ P R PSVQF
Sbjct: 15 PKRHVNDVTERRAGYFFSTGA*MTIQPDQARQFPRR*IQPSVQF 146
>gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, complete cds
Length = 1651
Score = 149 bits (320), Expect(2) = 5e-063
Identities = 63/97 (64%), Positives = 77/97 (79%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F++QFF LALCGIT L + PTFASAIQNSVPAITF MAAAL
Sbjct: 417 KKERPALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAAL 596
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKV + RRDG+AK+ GT+ACV+ A++ITLYKGP I
Sbjct: 597 RLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPI 707
Score = 111 bits (238), Expect(2) = 5e-063
Identities = 39/50 (78%), Positives = 48/50 (96%)
Frame = +1 / +3
Query: 403 AGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
A +NWTLGC+YL+G+CL+WSGW+VLQAPVLK+YPARL+VTS+TCFFGVI
Sbjct: 780 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVI 929
>gb|CF478049.1|CF478049 RTWW3_17_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_E06_A022 5', mRNA sequence
Length = 828
Score = 107 bits (228), Expect(4) = 1e-056
Identities = 46/67 (68%), Positives = 55/67 (82%)
Frame = +1 / +3
Query: 148 LLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXASVIT 327
LLGL T+PTFASAIQNSVPAITF MAA L +E+V + R DG+AK+ GT+ACV A++IT
Sbjct: 405 LLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDGLAKIVGTVACVGGATIIT 584
Query: 328 LYKGPTI 348
LYKGP I
Sbjct: 585 LYKGPPI 605
Score = 67.5 bits (141), Expect(4) = 1e-056
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLG 156
+K+RP LTL+F+VQFF LALCGITANQGFYL G
Sbjct: 314 KKERPPLTLSFLVQFFLLALCGITANQGFYLAG 412
Score = 62.5 bits (130), Expect(4) = 1e-056
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1 / +3
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLK 498
+NWTLGC+YL+G+CL+WSGW+V+ VLK
Sbjct: 687 ENWTLGCIYLLGNCLAWSGWIVIXGAVLK 773
Score = 39.1 bits (79), Expect(4) = 1e-056
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = +1 / +2
Query: 496 KKYPARLAVTSYTCFFGVI 552
++YPARL+VTS+TC FG+I
Sbjct: 770 EEYPARLSVTSFTCLFGII 826
>gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_G08_A022 5', mRNA sequence
Length = 735
Score = 167 bits (360), Expect(2) = 3e-052
Identities = 70/97 (72%), Positives = 83/97 (85%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 295 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 474
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+E+V + R DG+AK+ GT+ACV A++ITLYKGP I
Sbjct: 475 GLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPI 585
Score = 57.4 bits (119), Expect(2) = 3e-052
Identities = 16/23 (69%), Positives = 23/23 (100%)
Frame = +1 / +1
Query: 412 KNWTLGCVYLIGHCLSWSGWLVL 480
+NWTLGC+YL+G+CL+WSGW+V+
Sbjct: 667 ENWTLGCIYLLGNCLAWSGWIVI 735
>gb|BX680621.1|BX680621 BX680621 RS Pinus pinaster cDNA clone RS46A04, mRNA sequence
Length = 606
Score = 113 bits (241), Expect(2) = 4e-051
Identities = 48/69 (69%), Positives = 57/69 (82%)
Frame = +1 / +2
Query: 142 FYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXASV 321
FYLLGL T+PTFASAIQNSVPAITF MAA L +E+V + R DG+AK+ GT+ACV A++
Sbjct: 2 FYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDGLAKIVGTVACVGGATI 181
Query: 322 ITLYKGPTI 348
ITLYKGP I
Sbjct: 182 ITLYKGPPI 208
Score = 108 bits (230), Expect(2) = 4e-051
Identities = 36/47 (76%), Positives = 46/47 (97%)
Frame = +1 / +2
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+NWTLGC+YL+G+CL+WSGW+V+QAPVLKKYPARL+VTS+TC FG+I
Sbjct: 290 ENWTLGCIYLLGNCLAWSGWIVIQAPVLKKYPARLSVTSFTCLFGII 430
>gb|BM158786.1|BM158786 NXLV_038_D04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_038_D04 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 555
Score = 105 bits (224), Expect(2) = 5e-048
Identities = 36/47 (76%), Positives = 44/47 (93%)
Frame = +1 / +3
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+NWTLGC+YL G+CL WSGW+V+QAPVLKKYPARL+VTS+TC FG+I
Sbjct: 327 ENWTLGCIYLPGNCLXWSGWIVIQAPVLKKYPARLSVTSFTCLFGII 467
Score = 105 bits (224), Expect(2) = 5e-048
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +1 / +3
Query: 121 GITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLA 300
G+TANQG YLLGL T+PTFA AI NSVPAIT+ MAA L +E+ + R G A + GT+
Sbjct: 18 GMTANQGSYLLGLHYTTPTFAYAIHNSVPAITYIMAAILGLEEAHIKRLHGSANIVGTVX 197
Query: 301 CVAXASVITLYKGPTI 348
CV A++ITLY GP I
Sbjct: 198 CVGGATIITLYIGPPI 245
>gb|BX254061.1|BX254061 BX254061 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092G08, mRNA sequence
Length = 682
Score = 167 bits (360), Expect = 4e-041
Identities = 70/97 (72%), Positives = 83/97 (85%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 317 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 496
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+E+V + R DG+AK+ GT+ACV A++ITLYKGP I
Sbjct: 497 GLEEVHIRRLDGLAKIVGTVACVGGATIITLYKGPPI 607
>gb|DR110236.1|DR110236 RTS1_9_E09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_E09_A029 5', mRNA sequence
Length = 918
Score = 116 bits (247), Expect(2) = 3e-038
Identities = 50/97 (51%), Positives = 61/97 (62%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP +TL+ Q F LAL GI NQ FY GL+ T+ TFA+A N +P +TF MA L
Sbjct: 223 RKQRPPMTLSIFFQIFLLALGGIAINQNFYFAGLNYTNSTFAAATTNLIPVVTFVMATVL 402
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R E V + G+AKV GT+ CV A V+TLYKG I
Sbjct: 403 RYENVNIRSLRGLAKVVGTIVCVGGAMVMTLYKGSVI 513
Score = 62.5 bits (130), Expect(2) = 3e-038
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1 / +1
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
N LG + L +WS W++ QAPV+KKYPA+L++T+ C FG +
Sbjct: 547 NSILGSILLFASVFAWSSWIIFQAPVVKKYPAQLSLTAMMCMFGAL 684
>gb|CF392847.1|CF392847 RTDR3_19_G07.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_G07_A022 5', mRNA
sequence
Length = 843
Score = 110 bits (234), Expect(2) = 4e-036
Identities = 47/97 (48%), Positives = 61/97 (62%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT + Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 305 RKVRPKLTFHIFCQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFMMALLF 484
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKV + AK+ GT+ CV A ++TLYKGP +
Sbjct: 485 RMEKVNIKNLRSQAKIVGTIVCVVGAILMTLYKGPIV 595
Score = 61.1 bits (127), Expect(2) = 4e-036
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +1 / +2
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
E +ST+ + +K W +G + +I L+WS +LQA VLKKY A+L++ + CF G +
Sbjct: 629 ETSSTAASAIDNKAWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFMGTL 805
>gb|CO367342.1|CO367342 RTK1_33_E12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_33_E12_A029 5', mRNA sequence
Length = 765
Score = 107 bits (228), Expect(2) = 1e-035
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 252 RKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIF 431
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + AK+ GT+ CV A ++TLYKGP +
Sbjct: 432 RMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIV 542
Score = 62.5 bits (130), Expect(2) = 1e-035
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1 / +3
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
E +ST+ + +K W +G + +I L+WS +LQA VLKKY A+L++ + CF G I
Sbjct: 576 ETSSTTASANDNKEWIMGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFMGTI 752
>gb|DR384820.1|DR384820 RTHG1_4_F11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_F11_A029 5', mRNA sequence
Length = 690
Score = 107 bits (228), Expect(2) = 1e-035
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 48 RKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIF 227
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + AK+ GT+ CV A ++TLYKGP +
Sbjct: 228 RMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIV 338
Score = 62.5 bits (130), Expect(2) = 1e-035
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1 / +3
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
E +ST+ + +K W +G + +I L+WS +LQA VLKKY A+L++ + CF G I
Sbjct: 372 ETSSTTASANDNKEWIMGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFMGTI 548
>gb|BX254250.1|BX254250 BX254250 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP095F03, mRNA sequence
Length = 577
Score = 147 bits (315), Expect = 7e-035
Identities = 62/86 (72%), Positives = 73/86 (84%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
+K+RP LTL+F+VQFF LALCGITANQGFYLLGL T+PTFASAIQNSVPAITF MAA L
Sbjct: 319 KKERPPLTLSFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAIL 498
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXA 315
+E+V + R DG+AK+ GT+ACV A
Sbjct: 499 GLEEVHIRRLDGLAKIVGTVACVGGA 576
>gb|DT625230.1|DT625230 EST1159505 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAN30 5' end, mRNA sequence
Length = 795
Score = 108 bits (230), Expect(2) = 1e-034
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 207 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 386
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 387 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 542
Score = 57.9 bits (120), Expect(2) = 1e-034
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1 / +3
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFG 546
G + W +G + LIG+C+ + +L LQAPVL YPA L++T+Y+ FG
Sbjct: 597 GLETWHVGIICLIGNCMCMATYLALQAPVLVHYPASLSLTAYSYLFG 737
>gb|CF387362.1|CF387362 RTDR1_12_G11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_G11_A015 5', mRNA
sequence
Length = 750
Score = 108 bits (230), Expect(2) = 1e-034
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 208 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 387
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 388 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 543
Score = 57.9 bits (120), Expect(2) = 1e-034
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1 / +1
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFG 546
G + W +G + LIG+C+ + +L LQAPVL YPA L++T+Y+ FG
Sbjct: 598 GLETWHVGIICLIGNCMCMATYLALQAPVLVHYPASLSLTAYSYLFG 738
>gb|DN450504.1|DN450504 EST946303 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEQ48 5' end, mRNA sequence
Length = 714
Score = 108 bits (230), Expect(2) = 1e-034
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 74 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 253
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 254 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 409
Score = 57.9 bits (120), Expect(2) = 1e-034
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1 / +2
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFG 546
G + W +G + LIG+C+ + +L LQAPVL YPA L++T+Y+ FG
Sbjct: 464 GLETWHVGIICLIGNCMCMATYLALQAPVLVHYPASLSLTAYSYLFG 604
>gb|CV031904.1|CV031904 RTNACL1_4_B04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_B04_A029 5', mRNA sequence
Length = 825
Score = 108 bits (230), Expect(2) = 2e-034
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 285 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 464
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 465 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 620
Score = 57.0 bits (118), Expect(2) = 2e-034
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1 / +3
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFG 546
G + W +G + LIG+C+ + +L LQAPVL YPA L++T+Y+ FG
Sbjct: 675 GLETWHVGIICLIGNCMCMAIYLALQAPVLVHYPASLSLTAYSYLFG 815
>gb|DR078570.1|DR078570 RTFEPL1_5_C05.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C05_A029 5', mRNA sequence
Length = 788
Score = 105 bits (223), Expect(2) = 3e-034
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY LGL TSPT++ A+ N +PA+TF +A
Sbjct: 33 RKVRPKITFSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVF 212
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 213 RMERVNIKQVRSQAKILGTIVCVGGAMLMTLYKGPLV 323
Score = 59.7 bits (124), Expect(2) = 3e-034
Identities = 22/52 (42%), Positives = 35/52 (67%)
Frame = +1 / +3
Query: 397 AVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
AV +K+W +G + +I L+WSG +LQA VLK+Y A+L++ + CF G +
Sbjct: 387 AVIDEKDWIVGSLLIIAATLAWSGLFILQARVLKQYSAQLSLATLICFLGTL 542
>gb|DR092668.1|DR092668 STRR1_2_H07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_2_H07_A033 5', mRNA sequence
Length = 868
Score = 107 bits (228), Expect(2) = 6e-034
Identities = 48/107 (44%), Positives = 59/107 (55%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R +RP +T + F LA GIT NQ Y GL TS TFASA N +P +TF +A
Sbjct: 289 RSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTF 468
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLE 378
R+E V + G AKV GTL CV A V+TLYKGP + L+
Sbjct: 469 RMEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSGLGLD 609
Score = 56.5 bits (117), Expect(2) = 6e-034
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1 / +1
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
G W LG + L C +WS WL QAPV+KKYP + ++T+ G +
Sbjct: 601 GLDTWVLGALLLFASCFAWSCWLTFQAPVVKKYPVQQSLTALMLIQGTV 747
>gb|DR120323.1|DR120323 RTMG1_29_A06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_29_A06_A029 3', mRNA sequence
Length = 866
Score = 103 bits (219), Expect(2) = 6e-034
Identities = 44/97 (45%), Positives = 61/97 (62%)
Frame = +1 / -3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT + Q F L L G +Q F LGL TSPT+A A+ N +P +TF +A L
Sbjct: 735 RKMRPKLTFSIFCQIFVLGLLGPVIDQNFSYLGLKLTSPTYACALSNVLPCMTFVIALLL 556
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 555 RMERVNIKKLRSGAKLVGTIVCVGGAMLMTLYKGPIV 445
Score = 60.6 bits (126), Expect(2) = 6e-034
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1 / -3
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+++ AG K+W +G V ++G +WS +LQ+ VLKKYPA+L++ + C G +
Sbjct: 399 TSAGTAAGSKDWLIGSVLMVGATFAWSILFILQSAVLKKYPAQLSLATLICLLGTL 232
>gb|CO171061.1|CO171061 NDL1_18_F06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F06_A029 5', mRNA sequence
Length = 824
Score = 107 bits (228), Expect(2) = 6e-034
Identities = 48/107 (44%), Positives = 59/107 (55%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R +RP +T + F LA GIT NQ Y GL TS TFASA N +P +TF +A
Sbjct: 227 RSERPAMTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTF 406
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLE 378
R+E V + G AKV GTL CV A V+TLYKGP + L+
Sbjct: 407 RMEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSGLGLD 547
Score = 56.5 bits (117), Expect(2) = 6e-034
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1 / +2
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
G W LG + L C +WS WL QAPV+KKYP + ++T+ G +
Sbjct: 539 GLDTWVLGALLLFASCFAWSCWLTFQAPVVKKYPVQQSLTALMLIQGTV 685
>gb|CF471103.1|CF471103 RTDS1_16_C03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_16_C03_A015 5', mRNA sequence
Length = 822
Score = 108 bits (230), Expect(2) = 3e-033
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 281 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 460
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 461 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 616
Score = 53.3 bits (110), Expect(2) = 3e-033
Identities = 20/43 (46%), Positives = 31/43 (72%)
Frame = +1 / +2
Query: 406 GDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYT 534
G + W +G + LIG+C+ + +L LQAPVL YPA L++T+Y+
Sbjct: 671 GLETWHVGIICLIGNCMCMATYLALQAPVLVHYPASLSLTAYS 799
>gb|CX648371.1|CX648371 COLD1_28_F03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_F03_A029 3', mRNA sequence
Length = 766
Score = 99.6 bits (211), Expect(2) = 3e-033
Identities = 40/97 (41%), Positives = 59/97 (60%)
Frame = +1 / -1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK+RP++T Q F L G +Q Y +GL TSPT+A A+ N +PA+TF MA
Sbjct: 634 RKERPKMTFFTFCQIFVLGSLGPVLDQNLYYIGLKLTSPTYACALSNLLPAMTFVMALIF 455
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++T+Y GP +
Sbjct: 454 RMERVNIKKLRSQAKIVGTIVCVGGAMLMTMYNGPIV 344
Score = 62.0 bits (129), Expect(2) = 3e-033
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +1 / -1
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
++S ++W +G + LI L+WSG +LQA V+KKYPA L++++ CF G +
Sbjct: 292 TSSDTAVDHRSWIVGSLVLIASTLAWSGVFILQAAVMKKYPAELSLSTLMCFLGTL 125
>gb|CO367804.1|CO367804 RTK1_36_F02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_F02_A029 5', mRNA sequence
Length = 751
Score = 107 bits (228), Expect(2) = 2e-032
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 280 RKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIF 459
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + AK+ GT+ CV A ++TLYKGP +
Sbjct: 460 RMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIV 570
Score = 51.5 bits (106), Expect(2) = 2e-032
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1 / +1
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAV 522
E +ST+ + +K W +G + +I L+WS +LQA VLKKY A+L++
Sbjct: 604 ETSSTTASANDNKEWIMGSLLIIAATLAWSALFILQAAVLKKYSAQLSL 750
>gb|CF390662.1|CF390662 RTDR2_20_D03.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_D03_A021 5', mRNA
sequence
Length = 759
Score = 107 bits (228), Expect(2) = 3e-032
Identities = 46/97 (47%), Positives = 60/97 (61%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 291 RKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIF 470
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + AK+ GT+ CV A ++TLYKGP +
Sbjct: 471 RMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIV 581
Score = 51.0 bits (105), Expect(2) = 3e-032
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1 / +3
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLA 519
E +ST+ + +K W +G + +I L+WS +LQA VLKKY A+L+
Sbjct: 615 ETSSTTASANDNKEWIMGSLLIIAATLAWSALFILQAAVLKKYSAQLS 758
>gb|CV032789.1|CV032789 RTNACL1_18_H01.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H01_A029 3', mRNA sequence
Length = 788
Score = 103 bits (220), Expect(2) = 7e-032
Identities = 46/97 (47%), Positives = 59/97 (60%)
Frame = +1 / -3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL T+PTFA A+ N +PA+TF MA
Sbjct: 501 RKVRPKLTFYTFCQMFVLGLLGPVLDQNFYYLGLKLTTPTFACALSNLLPAMTFVMALLF 322
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKV + AK+ GT+ V A ++TLYKGP +
Sbjct: 321 RMEKVNIKNIRSQAKIVGTILSVGGAMLMTLYKGPVV 211
Score = 53.3 bits (110), Expect(2) = 7e-032
Identities = 20/52 (38%), Positives = 32/52 (61%)
Frame = +1 / -3
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCF 540
++ A ++NW +G + +I L+WS +LQA V KKY A L++T+ CF
Sbjct: 159 TSETAAVSNRNWIIGSLLVIAGTLAWSALFILQAAVQKKYSAPLSLTTSICF 4
>gb|CO167692.1|CO167692 FLD1_70_C03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_C03_A029 5', mRNA sequence
Length = 650
Score = 97.7 bits (207), Expect(2) = 2e-030
Identities = 42/97 (43%), Positives = 58/97 (59%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+L + Q F L L +Q FY LGL TSPT+A + N +PA+TF MA
Sbjct: 157 RKVRPKLKFSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLINVLPAMTFVMALLF 336
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 337 RMESLNIKKLRSQAKIVGTIVCVGGAMLMTLYKGPIL 447
Score = 54.2 bits (112), Expect(2) = 2e-030
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1 / +1
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCF 540
S + A + K W +G + ++ LSWS +LQA VL+KY A L+V + CF
Sbjct: 493 SVAAAASDSKEWMIGTLLILAATLSWSAMFILQAAVLRKYCAPLSVATLICF 648
>gb|DR385454.1|DR385454 RTHG1_8_F06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F06_A029 5', mRNA sequence
Length = 821
Score = 95.5 bits (202), Expect(2) = 3e-030
Identities = 41/97 (42%), Positives = 57/97 (58%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R RP+L + Q F L L +Q FY LGL TSPT+A + N +PA+TF MA
Sbjct: 217 RNVRPKLKFSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLINVLPAMTFVMALLF 396
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 397 RMESLNIKKLRSQAKIVGTIVCVGGAMLMTLYKGPIL 507
Score = 56.1 bits (116), Expect(2) = 3e-030
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1 / +1
Query: 397 AVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
A + K W +G + ++ LSWS +LQA VL+KY A L+V + CF G +
Sbjct: 565 AASDSKEWMIGTLLILAATLSWSAMFILQAAVLRKYCAPLSVATLICFLGAL 720
>gb|DR091559.1|DR091559 RTAL1_22_A11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_A11_A029 5', mRNA sequence
Length = 845
Score = 94.1 bits (199), Expect(2) = 6e-030
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R RP+L + Q F L L +Q FY LGL TSPT+A + N +PA+TF MA
Sbjct: 219 RNVRPKLKFSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLMNILPAMTFVMALLF 398
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + + + AK+ G + CV A ++TLYKGP +
Sbjct: 399 RMESLNIKKLRSQAKIVGMIVCVGGAMLMTLYKGPIL 509
Score = 56.5 bits (117), Expect(2) = 6e-030
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1 / +3
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
S + A + K W +G + ++ LSWS +LQ VL+KY A L+V + CF G +
Sbjct: 555 SAAAAASDSKEWMIGTLLILAATLSWSAMFILQTAVLRKYRAPLSVATLICFLGAL 722
>gb|CO166712.1|CO166712 FLD1_64_A09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_A09_A029 3', mRNA sequence
Length = 789
Score = 94.1 bits (199), Expect(2) = 8e-030
Identities = 40/97 (41%), Positives = 56/97 (57%)
Frame = +1 / -1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R RP+L + Q F L L +Q FY LGL TSPT+A + N +PA+TF MA
Sbjct: 594 RNVRPKLKFSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLMNILPAMTFVMALLF 415
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E + + + AK+ G + CV A ++TLYKGP +
Sbjct: 414 RMESLNIKKLRSQAKIVGMIVCVGGAMLMTLYKGPIL 304
Score = 56.1 bits (116), Expect(2) = 8e-030
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1 / -1
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
S + A + K W +G + ++ LSWS +LQ VL+KY A L+V + CF G +
Sbjct: 258 SAAAAASDSKEWMIGTLLILAATLSWSAMFILQTAVLRKYCAPLSVATLICFLGAL 91
>gb|DR012414.1|DR012414 HEAT1_12_E02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_E02_A029 5', mRNA sequence
Length = 500
Score = 86.3 bits (182), Expect(2) = 7e-029
Identities = 36/82 (43%), Positives = 52/82 (63%)
Frame = +1 / +3
Query: 103 FFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAK 282
F L L G +Q F LGL TSPT+A A+ N +P +TF +A LR+E+V + + AK
Sbjct: 3 FVLGLLGPVIDQNFSYLGLKLTSPTYACALSNVLPCMTFVIALLLRMERVNIKKLRSGAK 182
Query: 283 VAGTLACVAXASVITLYKGPTI 348
+ GT+ CV A ++TLY+GP +
Sbjct: 183 LVGTIVCVGGAMLMTLYEGPIV 248
Score = 60.6 bits (126), Expect(2) = 7e-029
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1 / +3
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+++ AG K+W +G V ++G +WS +LQ+ VLKKYPA+L++ + C G +
Sbjct: 294 TSAGTAAGSKDWLIGSVLMVGATFAWSILFILQSAVLKKYPAQLSLATLICLLGTL 461
>gb|CO363075.1|CO363075 RTK1_7_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_B06_A029 5', mRNA sequence
Length = 820
Score = 108 bits (230), Expect(2) = 3e-028
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 54 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 233
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 234 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 389
Score = 38.2 bits (77), Expect(2) = 3e-028
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 472 LVLQAPVLKKYPARLAVTSYTCFFG 546
L+LQAPVL YPA L++T+Y+ FG
Sbjct: 713 LLLQAPVLVHYPASLSLTAYSYLFG 787
>gb|CO197528.1|CO197528 GEO1_7_D07.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_D07_A029 3', mRNA sequence
Length = 768
Score = 105 bits (223), Expect(2) = 5e-028
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +1 / -3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY LGL TSPT++ A+ N +PA+TF +A
Sbjct: 454 RKVRPKITFSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVF 275
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 274 RMERVNIKQVRSQAKILGTIVCVGGAMLMTLYKGPLV 164
Score = 39.1 bits (79), Expect(2) = 5e-028
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1 / -3
Query: 397 AVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVL 495
AV +K+W +G + +I L+WSG +LQA VL
Sbjct: 100 AVIDEKDWIVGSLLIIAATLAWSGLFILQARVL 2
>gb|DR177641.1|DR177641 RTMNUT1_6_B12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_6_B12_A029 5', mRNA sequence
Length = 741
Score = 80.3 bits (169), Expect(2) = 5e-028
Identities = 31/68 (45%), Positives = 45/68 (66%)
Frame = +1 / +3
Query: 145 YLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXASVI 324
Y +GL TSPT+A A+ N +PA+TF MA R+E+V + + AK+ GT+ CV A ++
Sbjct: 3 YYIGLKLTSPTYACALSNLLPAMTFVMALIFRMERVNIKKLRSQAKIVGTIVCVGGAMLM 182
Query: 325 TLYKGPTI 348
TLY GP +
Sbjct: 183 TLYNGPIV 206
Score = 63.8 bits (133), Expect(2) = 5e-028
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1 / +3
Query: 385 STSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
++S +NW +G + LI L+WSG +LQA V+KKYPA L++++ CF G +
Sbjct: 258 TSSATAVDRRNWIVGSLVLIASTLAWSGVFILQAAVMKKYPAELSLSTLMCFLGTL 425
>gb|CF474025.1|CF474025 RTWW2_18_D06.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_D06_A021 3', mRNA sequence
Length = 698
Score = 108 bits (231), Expect(2) = 1e-026
Identities = 47/97 (48%), Positives = 61/97 (62%)
Frame = +1 / -2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY GL TSPTFA A+ N +PA+TF MAA
Sbjct: 406 RKVRPKITFSIFCQIFALGLLGPVIDQNFYYAGLKYTSPTFACAMSNVLPAMTFVMAALF 227
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKV + K+AGT+ CV A ++TLYKGP +
Sbjct: 226 RMEKVDIKMVRSQTKIAGTVVCVGGAMLMTLYKGPIV 116
Score = 30.9 bits (61), Expect(2) = 1e-026
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1 / -2
Query: 388 TSKAVAGDKNWTLGCVYLIGHCLS 459
+S +V DK+WT+G + L+ CL+
Sbjct: 73 SSSSVNSDKDWTVGSLLLVAACLA 2
>gb|DR682638.1|DR682638 EST1072713 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB20 3' end, mRNA sequence
Length = 767
Score = 106 bits (227), Expect(2) = 3e-026
Identities = 48/107 (44%), Positives = 59/107 (55%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
R +RP +T + F LA GIT NQ Y GL TS TFASA N +P +TF +A
Sbjct: 380 RSERPVMTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTF 559
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLE 378
R+E V + G AKV GTL CV A V+TLYKGP + L+
Sbjct: 560 RMEHVNIRSIYGQAKVVGTLVCVGGAMVMTLYKGPVLLKAVSGLGLD 700
Score = 31.3 bits (62), Expect(2) = 3e-026
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1 / +2
Query: 406 GDKNWTLGCVYLIGHCLSWSGWL 474
G W LG + L C +WS WL
Sbjct: 692 GLDTWVLGALLLFASCFAWSCWL 760
>gb|CO363787.1|CO363787 RTK1_11_G02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G02_A029 5', mRNA sequence
Length = 746
Score = 105 bits (223), Expect(2) = 5e-026
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY LGL TSPT++ A+ N +PA+TF +A
Sbjct: 307 RKVRPKITFSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVF 486
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 487 RMERVNIKQVRSQAKILGTIVCVGGAMLMTLYKGPLV 597
Score = 32.2 bits (64), Expect(2) = 5e-026
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 397 AVAGDKNWTLGCVYLIGHCLSWSGWLVL 480
AV +K+W +G + +I L+WSG +L
Sbjct: 661 AVIDEKDWIVGSLLIIAATLAWSGLFIL 744
>gb|CO170548.1|CO170548 NDL1_15_B11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_15_B11_A029 3', mRNA sequence
Length = 684
Score = 84.0 bits (177), Expect(2) = 5e-026
Identities = 37/69 (53%), Positives = 44/69 (63%)
Frame = +1 / -1
Query: 133 NQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAX 312
NQ FY L TSPTFA A+ N VPA+TF MA +E+V + G AKV GTL CV
Sbjct: 678 NQNFYYAALGYTSPTFACALSNMVPAVTFLMAIPFGLERVGIRSLAGQAKVLGTLICVGG 499
Query: 313 ASVITLYKG 339
A ++TLYKG
Sbjct: 498 AMLMTLYKG 472
Score = 53.3 bits (110), Expect(2) = 5e-026
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1 / -1
Query: 412 KNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+N T G + L+ C+SWS W +LQA + ++Y A+ T+ CF I
Sbjct: 399 ENLTKGSLLLVASCISWSSWFILQAKLSRRYSAKYTSTALMCFLATI 259
>gb|DR384632.1|DR384632 RTHG1_3_B11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_B11_A029 5', mRNA sequence
Length = 743
Score = 105 bits (225), Expect(2) = 2e-025
Identities = 45/97 (46%), Positives = 60/97 (61%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF +A
Sbjct: 318 RKARPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVIALIF 497
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + AK+ GT+ CV A ++TLYKGP +
Sbjct: 498 RMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIV 608
Score = 29.5 bits (58), Expect(2) = 2e-025
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1 / +3
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLV 477
E +ST+ + K W +G + +I L+WS +
Sbjct: 642 ETSSTTASAKDKKEWIMGSLLIIAATLAWSALFI 743
>gb|CF478553.1|CF478553 RTWW3_20_G02.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_G02_A022 5', mRNA sequence
Length = 692
Score = 75.8 bits (159), Expect(2) = 2e-025
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +1 / +2
Query: 166 TSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPT 345
TSPT+ A+ N +PA+TFAMA R+EKV + AK+ GT+ C A A ++TLYKGP
Sbjct: 11 TSPTYLCALSNVLPAMTFAMAILFRMEKVNIKNLRSQAKIVGTIVCFAGAMLMTLYKGPI 190
Query: 346 I 348
+
Sbjct: 191 V 193
Score = 59.7 bits (124), Expect(2) = 2e-025
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +1 / +2
Query: 376 ELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
E +S + + +K+W +G + +I L+WS +LQA VLKKY A+L++ + CF G +
Sbjct: 227 ETSSRAPSAIDNKDWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFLGTL 403
>gb|DR071708.1|DR071708 RTDK1_21_D03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_D03_A029 5', mRNA sequence
Length = 724
Score = 105 bits (223), Expect(2) = 2e-025
Identities = 43/97 (44%), Positives = 62/97 (63%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY LGL TSPT++ A+ N +PA+TF +A
Sbjct: 299 RKVRPKITFSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVF 478
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E+V + + AK+ GT+ CV A ++TLYKGP +
Sbjct: 479 RMERVNIKQVRSQAKILGTIVCVGGAMLMTLYKGPLV 589
Score = 29.9 bits (59), Expect(2) = 2e-025
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 397 AVAGDKNWTLGCVYLIGHCLSWSG 468
AV +K+W +G + +I L+WSG
Sbjct: 653 AVIDEKDWIVGSLLIIAATLAWSG 724
>gb|CF476506.1|CF476506 RTWW3_1_C09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_C09_A022 5', mRNA sequence
Length = 638
Score = 113 bits (242), Expect = 8e-025
Identities = 48/97 (49%), Positives = 64/97 (65%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT + +Q F L L G +Q FY LGL TSPT+A A+ N +PA+TF MA
Sbjct: 266 RKVRPKLTFSIFLQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALLF 445
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E V + + AK+AGT+ CVA A ++TLYKGP +
Sbjct: 446 RMETVNIKKLRSQAKIAGTIVCVAGAMLMTLYKGPIV 556
>gb|BX249072.1|BX249072 BX249072 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP014G12, mRNA sequence
Length = 680
Score = 111 bits (238), Expect = 3e-024
Identities = 39/50 (78%), Positives = 48/50 (96%)
Frame = +1 / +3
Query: 403 AGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
A +NWTLGC+YL+G+CL+WSGW+VLQAPVLK+YPARL+VTS+TCFFGVI
Sbjct: 297 AKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVI 446
>gb|CO366574.1|CO366574 RTK1_28_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_E03_A029 5', mRNA sequence
Length = 776
Score = 87.2 bits (184), Expect(2) = 4e-024
Identities = 39/91 (42%), Positives = 58/91 (63%)
Frame = +1 / +3
Query: 76 LTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVR 255
++L +VQFF ++L G+ Q F L+GL +TSP FASA+ N PA+ F +A AL +EKV
Sbjct: 285 VSLTLLVQFFLVSLGGVCGFQAFLLMGLRDTSPAFASAMPNLAPALIFILAWALGMEKVD 464
Query: 256 LDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
+ AK+ GT+ CV A ++ +GPT+
Sbjct: 465 VMCIRSRAKILGTVICVGGAMAMSFLQGPTL 557
Score = 43.7 bits (89), Expect(2) = 4e-024
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1 / +3
Query: 415 NWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYT 534
N GC+YLI + S ++LQ LKK+PA L++TS T
Sbjct: 654 NQIRGCIYLISAVIMLSTTMILQVETLKKFPATLSLTSIT 773
>gb|CX713678.1|CX713678 RTPQ1_11_H04.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_11_H04_A032 5', mRNA sequence
Length = 673
Score = 82.2 bits (173), Expect(2) = 4e-024
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +1 / +2
Query: 97 QFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAALRIEKVRLDRRDGV 276
QFF ++L G+ Q F L+GL +TSP FASA+ N PA+ F +A AL +EKV +
Sbjct: 14 QFFLVSLGGVCGFQAFLLMGLRDTSPAFASAMPNLAPALIFILAWALGMEKVDVMCIRSR 193
Query: 277 AKVAGTLACVAXASVITLYKGPTI 348
AK+ GT+ CV A ++ +GPT+
Sbjct: 194 AKILGTVICVGGAMAMSFLQGPTL 265
Score = 48.7 bits (100), Expect(2) = 4e-024
Identities = 23/60 (38%), Positives = 31/60 (51%)
Frame = +1 / +2
Query: 373 LELASTSKAVAGDKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLAVTSYTCFFGVI 552
+ LA T N GC+YLI + S ++LQ LKK+PA L++TS T G I
Sbjct: 320 VHLAETILHEGDSGNQIRGCIYLISAVIMLSTTMILQVETLKKFPATLSLTSITAILGSI 499
>gb|DR687035.1|DR687035 EST1077113 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM57 3' end, mRNA sequence
Length = 669
Score = 110 bits (235), Expect = 8e-024
Identities = 46/97 (47%), Positives = 63/97 (64%)
Frame = +1 / +1
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP+LT + Q F L L G +Q Y LGL TSPT+ASA+ N +PA+TF MA
Sbjct: 298 RKVRPKLTFSIFCQSFVLGLLGPVIDQNLYYLGLKLTSPTYASALSNVLPAMTFVMALIF 477
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+E++ + +R AK+ GT+ CV A ++TLYKGP +
Sbjct: 478 RMERLNIKKRRSQAKIVGTIVCVVGAILMTLYKGPIV 588
>gb|DR167860.1|DR167860 RTPHOS1_21_D01.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_D01_A029 5', mRNA sequence
Length = 623
Score = 108 bits (231), Expect = 3e-023
Identities = 47/97 (48%), Positives = 61/97 (62%)
Frame = +1 / +3
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
RK RP++T + Q F L L G +Q FY GL TSPTFA A+ N +PA+TF MAA
Sbjct: 267 RKVRPKITFSIFCQIFALGLLGPVIDQNFYYAGLKYTSPTFACAMSNVLPAMTFVMAALF 446
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTI 348
R+EKV + K+AGT+ CV A ++TLYKGP +
Sbjct: 447 RMEKVDIKMVRSQTKIAGTVVCVGGAMLMTLYKGPIV 557
>gb|BX250922.1|BX250922 BX250922 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042H11, mRNA sequence
Length = 671
Score = 108 bits (230), Expect = 4e-023
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 287 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 466
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 467 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 622
>gb|BG318327.1|BG318327 NXPV_012_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_012_C10 5' similar to Arabidopsis
thaliana sequence At4g19185 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 551
Score = 108 bits (230), Expect = 4e-023
Identities = 45/112 (40%), Positives = 66/112 (58%)
Frame = +1 / +2
Query: 58 RKDRPQLTLNFVVQFFFLALCGITANQGFYLLGLDNTSPTFASAIQNSVPAITFAMAAAL 237
++ RP +T + FFFL L GI NQ +++GLD TSPT+A+AIQ ++P TF +AA +
Sbjct: 32 KRIRPPITRRLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIM 211
Query: 238 RIEKVRLDRRDGVAKVAGTLACVAXASVITLYKGPTIFXXXXXXXLELASTS 393
E V L+ DG KV GTL C+ A + +++GP +F L T+
Sbjct: 212 GTESVNLNTIDGKVKVGGTLLCIFGALFMAIFRGPAVFGHAYMDLLAQGETT 367
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 198,936,116
Number of Sequences: 355925
Number of extensions: 2129317
Number of successful extensions: 28899
Number of sequences better than 1.0e-020: 64
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7272658380
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)