TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3670867.2.1
(790 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR079387.1|DR079387 RTFEPL1_11_A03.b1_A029 Roots plus ad... 121 8e-027
gb|DR094045.1|DR094045 STRR1_12_C07.b1_A033 Stem Response R... 121 8e-027
gb|DR682637.1|DR682637 EST1072712 Normalized pine embryo li... 119 3e-026
gb|BI077149.1|BI077149 NXPV_089_D08_F NXPV (Nsf Xylem Plani... 117 7e-026
gb|CF470514.1|CF470514 RTDS1_13_E12.b1_A015 Drought-stresse... 117 7e-026
gb|DR742603.1|DR742603 RTCU1_5_G07.b2_A029 Roots plus added... 117 7e-026
gb|DR112351.1|DR112351 RTS1_27_C11.g1_A029 Roots minus sulf... 116 1e-025
gb|CO162375.1|CO162375 FLD1_34_H09.g1_A029 Root flooded Pin... 116 2e-025
gb|CF395745.1|CF395745 RTDS2_16_C03.g1_A021 Drought-stresse... 116 3e-025
gb|DR110278.1|DR110278 RTS1_10_A09.b1_A029 Roots minus sulf... 116 3e-025
gb|CO162493.1|CO162493 FLD1_35_D11.g1_A029 Root flooded Pin... 115 4e-025
gb|CO162976.1|CO162976 FLD1_38_E01.g1_A029 Root flooded Pin... 115 4e-025
gb|DR090324.1|DR090324 RTAL1_14_G01.b1_A029 Roots plus adde... 115 4e-025
gb|BX252722.1|BX252722 BX252722 Pinus pinaster differenciat... 115 5e-025
gb|CX651932.1|CX651932 COLD1_55_F07.g1_A029 Root cold Pinus... 115 5e-025
gb|DR120591.1|DR120591 RTMG1_30_E08.g1_A029 Roots minus mag... 115 5e-025
gb|DR091491.1|DR091491 RTAL1_22_A11.b1_A029 Roots plus adde... 114 7e-025
gb|DR160195.1|DR160195 RTFE1_4_B04.g1_A029 Roots minus iron... 114 7e-025
gb|CF478827.1|CF478827 RTWW3_15_B07.b1_A022 Well-watered lo... 114 9e-025
gb|DR177641.1|DR177641 RTMNUT1_6_B12.g1_A029 Roots minus mi... 114 9e-025
gb|CX648453.1|CX648453 COLD1_28_F03.g1_A029 Root cold Pinus... 113 2e-024
gb|DR078936.1|DR078936 RTFEPL1_8_A01.b1_A029 Roots plus add... 113 2e-024
gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, ... 113 2e-024
gb|CO363698.1|CO363698 RTK1_11_G02.b1_A029 Roots minus pota... 112 2e-024
gb|DR056190.1|DR056190 RTCA1_28_D09.g1_A029 Roots minus cal... 112 2e-024
gb|DR120909.1|DR120909 RTMG1_32_E09.g1_A029 Roots minus mag... 112 2e-024
gb|DR178310.1|DR178310 RTMNUT1_11_A09.b1_A029 Roots minus m... 112 2e-024
gb|CF389151.1|CF389151 RTDR2_13_H05.g1_A021 Loblolly pine r... 111 5e-024
gb|CF391378.1|CF391378 RTDR3_1_G11.g1_A022 Loblolly pine ro... 111 5e-024
gb|CX648312.1|CX648312 COLD1_27_G09.g1_A029 Root cold Pinus... 111 5e-024
gb|DR050366.1|DR050366 RTBOR1_23_A12.b1_A029 Roots plus add... 111 5e-024
gb|DR100079.1|DR100079 STRR1_61_B04.g1_A033 Stem Response R... 111 5e-024
gb|DR744233.1|DR744233 RTCU1_21_C08.b1_A029 Roots plus adde... 111 5e-024
gb|DR078702.1|DR078702 RTFEPL1_6_G09.b1_A029 Roots plus add... 111 8e-024
gb|DR078494.1|DR078494 RTFEPL1_5_C05.b1_A029 Roots plus add... 110 1e-023
gb|DR120510.1|DR120510 RTMG1_30_E08.b1_A029 Roots minus mag... 110 2e-023
gb|DR744005.1|DR744005 RTCU1_19_D04.g1_A029 Roots plus adde... 109 3e-023
gb|DR110153.1|DR110153 RTS1_9_E09.b1_A029 Roots minus sulfu... 105 3e-023
gb|CO197601.1|CO197601 GEO1_7_D07.g1_A029 Root gravitropism... 108 4e-023
gb|CF393510.1|CF393510 RTDR3_13_C10.g1_A022 Loblolly pine r... 106 1e-022
gb|CO370329.1|CO370329 RTK1_67_E03.b1_A029 Roots minus pota... 106 1e-022
gb|CX646887.1|CX646887 COLD1_12_D07.b1_A029 Root cold Pinus... 106 1e-022
gb|CX646969.1|CX646969 COLD1_12_D07.g1_A029 Root cold Pinus... 106 1e-022
gb|DR052436.1|DR052436 RTCA1_4_D02.g1_A029 Roots minus calc... 106 1e-022
gb|DR110715.1|DR110715 RTS1_12_B08.g1_A029 Roots minus sulf... 106 1e-022
gb|DR181165.1|DR181165 RTMNUT1_37_E10.b2_A029 Roots minus m... 106 1e-022
gb|DR110633.1|DR110633 RTS1_12_B08.b1_A029 Roots minus sulf... 106 2e-022
gb|CO160570.1|CO160570 FLD1_22_B02.b1_A029 Root flooded Pin... 105 5e-022
gb|DR072348.1|DR072348 RTDK1_25_E08.g1_A029 Roots, dark Pin... 105 5e-022
gb|CF395826.1|CF395826 RTDS2_17_D07.g1_A021 Drought-stresse... 104 7e-022
gb|CO159612.1|CO159612 FLD1_14_E03.g1_A029 Root flooded Pin... 103 1e-021
gb|DR052356.1|DR052356 RTCA1_4_D02.b1_A029 Roots minus calc... 102 3e-021
gb|DR079231.1|DR079231 RTFEPL1_10_A04.b1_A029 Roots plus ad... 102 4e-021
gb|CO363013.1|CO363013 RTK1_7_D01.b1_A029 Roots minus potas... 101 7e-021
gb|CO370405.1|CO370405 RTK1_67_E03.g1_A029 Roots minus pota... 100 9e-021
>gb|DR079387.1|DR079387 RTFEPL1_11_A03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_A03_A029 3', mRNA sequence
Length = 811
Score = 121 bits (258), Expect = 8e-027
Identities = 43/113 (38%), Positives = 77/113 (68%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++++ C+ +Q + +F DPS W++HS EL +++G+ SG+ F +Q WCI
Sbjct: 207 LSVTSFTCLFGIIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCID 386
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKA 292
GP++ A+++P+ T+ V A+ +L E+ ++G ++GAI +IAGLY+VLWGK+
Sbjct: 387 RGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKS 545
>gb|DR094045.1|DR094045 STRR1_12_C07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C07_A033 3', mRNA sequence
Length = 817
Score = 121 bits (258), Expect = 8e-027
Identities = 43/113 (38%), Positives = 77/113 (68%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++++ C+ +Q + +F DPS W++HS EL +++G+ SG+ F +Q WCI
Sbjct: 171 LSVTSFTCLFGIIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCID 350
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKA 292
GP++ A+++P+ T+ V A+ +L E+ ++G ++GAI +IAGLY+VLWGK+
Sbjct: 351 RGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKS 509
>gb|DR682637.1|DR682637 EST1072712 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB20, mRNA sequence
Length = 845
Score = 119 bits (254), Expect = 3e-026
Identities = 47/128 (36%), Positives = 81/128 (63%)
Frame = -2 / -2
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+L+A M + T+QS ++ S W+++ +L V+SGV S F++Q++CI +
Sbjct: 769 SLTALMLIQGTVQSFVVALIFERKVSVWKLNWDIKLLSIVYSGVLCSAFAFFVQTYCIRI 590
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGV 268
+GP+++A+F P+ T++ + +L +LH+GSLLGAI +I GLYVVLWGKA D ++
Sbjct: 589 KGPVFAAVFNPVATILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAQDRSELDT 410
Query: 267 EPEHHSAD 244
+ E + +
Sbjct: 409 DTEKNGLE 386
>gb|BI077149.1|BI077149 NXPV_089_D08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_089_D08 5' similar to Arabidopsis
thaliana sequence At5g07050 MtN21 nodulin protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 493
Score = 117 bits (251), Expect = 7e-026
Identities = 46/116 (39%), Positives = 71/116 (61%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+ +C+L TLQ+ L L+ DPS W + L V+SGV S V +Y+Q C+
Sbjct: 1 LSLATLICLLGTLQATTLSIALVRDPSKWALGWDINLLTAVYSGVVASAVAYYVQGLCMR 180
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
V+GP+++ F PL +I V + +L E +++GS+LG + + GLY VLWGK D+
Sbjct: 181 VKGPVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLWGKLRDS 348
>gb|CF470514.1|CF470514 RTDS1_13_E12.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E12_A015 3', mRNA sequence
Length = 810
Score = 117 bits (251), Expect = 7e-026
Identities = 46/116 (39%), Positives = 71/116 (61%)
Frame = -2 / +2
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+ +C+L TLQ+ L L+ DPS W + L V+SGV S V +Y+Q C+
Sbjct: 128 LSLATLICLLGTLQATTLSIALVRDPSKWALGWDINLLTAVYSGVVASAVAYYVQGLCMR 307
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
V+GP+++ F PL +I V + +L E +++GS+LG + + GLY VLWGK D+
Sbjct: 308 VKGPVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLWGKLRDS 475
>gb|DR742603.1|DR742603 RTCU1_5_G07.b2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_5_G07_A029 3', mRNA sequence
Length = 693
Score = 117 bits (251), Expect = 7e-026
Identities = 46/116 (39%), Positives = 71/116 (61%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+ +C+L TLQ+ L L+ DPS W + L V+SGV S V +Y+Q C+
Sbjct: 28 LSLATLICLLGTLQATTLSIALVRDPSKWALGWDINLLTAVYSGVVASAVAYYVQGLCMR 207
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
V+GP+++ F PL +I V + +L E +++GS+LG + + GLY VLWGK D+
Sbjct: 208 VKGPVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLWGKLRDS 375
>gb|DR112351.1|DR112351 RTS1_27_C11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_27_C11_A029 5', mRNA sequence
Length = 527
Score = 116 bits (249), Expect = 1e-025
Identities = 47/115 (40%), Positives = 70/115 (60%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+LS MC LSTLQ+A L + PS W + +L V+SGV SG+ +YLQ C+
Sbjct: 183 LSLSTLMCFLSTLQAAALGLAVTRKPSDWALGWDIKLLAAVYSGVVSSGIAYYLQGVCMR 362
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
+GP++++ F PL +I + + +L E + +GS+ G + +I GLY VLWGK D
Sbjct: 363 SKGPVFASAFNPLMMIIVAIMGSIILSENIFLGSVFGGVLIIIGLYAVLWGKVKD 527
>gb|CO162375.1|CO162375 FLD1_34_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H09_A029 5', mRNA sequence
Length = 793
Score = 116 bits (248), Expect = 2e-025
Identities = 43/118 (36%), Positives = 72/118 (61%)
Frame = -2 / +1
Query: 636 SPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWC 457
+PL+++ +C L LQ +L L+ +PS W + L V++GV GS + +YLQ C
Sbjct: 142 APLSVATLICFLGALQGTVLGVALVREPSQWALRWDINLLTAVYTGVVGSAIAYYLQGLC 321
Query: 456 ISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+ ++GP+++ F PL +I + + +L E + VGS++G + + GLY VLWGKA D+
Sbjct: 322 MRLKGPVFATAFSPLMMIIVAIMGSIILSEHVFVGSVVGGVMIAVGLYAVLWGKAKDS 495
>gb|CF395745.1|CF395745 RTDS2_16_C03.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_C03_A021 5', mRNA sequence
Length = 770
Score = 116 bits (247), Expect = 3e-025
Identities = 43/119 (36%), Positives = 73/119 (61%)
Frame = -2 / +3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C + TLQ+A+L + DPS W + L V+SGV S + +Y+Q
Sbjct: 96 SAQLSLATLICFMGTLQAAVLSLAAVRDPSQWALGWDINLLTAVYSGVVASAIAYYVQGL 275
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
CI V+GP+++ F PL +I + + +L E + +GS++G + ++ GLY VLWGK D+
Sbjct: 276 CIRVKGPVFATAFSPLMMIIVAIMGSIILSENIFLGSVVGGVLIVLGLYAVLWGKVKDS 452
>gb|DR110278.1|DR110278 RTS1_10_A09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_A09_A029 3', mRNA sequence
Length = 772
Score = 116 bits (247), Expect = 3e-025
Identities = 43/119 (36%), Positives = 73/119 (61%)
Frame = -2 / -1
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C + TLQ+A+L + DPS W + L V+SGV S + +Y+Q
Sbjct: 595 SAQLSLATLICFMGTLQAAVLSLAAVRDPSQWALGWDINLLTAVYSGVVASAIAYYVQGL 416
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
CI V+GP+++ F PL +I + + +L E + +GS++G + ++ GLY VLWGK D+
Sbjct: 415 CIRVKGPVFATAFSPLMMIIVAIMGSIILSENIFLGSVVGGVLIVLGLYAVLWGKVKDS 239
>gb|CO162493.1|CO162493 FLD1_35_D11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D11_A029 5', mRNA sequence
Length = 816
Score = 115 bits (246), Expect = 4e-025
Identities = 43/117 (36%), Positives = 71/117 (60%)
Frame = -2 / -2
Query: 636 SPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWC 457
+PL+++ +C L LQ +L L+ +PS W + L V++GV GS + +Y+Q C
Sbjct: 752 APLSVATLICFLGALQGTVLGVALVREPSEWALRWDINLLTAVYTGVVGSAIAYYVQGLC 573
Query: 456 ISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
+ ++GP+++ F PL +I V + +L E + VGS++G + + GLY VLWGKA D
Sbjct: 572 MRLKGPVFATAFSPLMMIIVAVMGSIILSEHISVGSVVGGVMIAVGLYAVLWGKAKD 402
>gb|CO162976.1|CO162976 FLD1_38_E01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_E01_A029 5', mRNA sequence
Length = 835
Score = 115 bits (246), Expect = 4e-025
Identities = 43/117 (36%), Positives = 71/117 (60%)
Frame = -2 / +3
Query: 636 SPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWC 457
+PL+++ +C L LQ +L L+ +PS W + L V++GV GS + +Y+Q C
Sbjct: 210 APLSVATLICFLGALQGTVLGVALVREPSLWALRWDINLLTAVYTGVVGSAIAYYVQGLC 389
Query: 456 ISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
+ ++GP+++ F PL +I V + +L E + VGS++G + + GLY VLWGKA D
Sbjct: 390 MRLKGPVFATAFSPLMMIIVAVMGSIILSEHISVGSVVGGVMIAVGLYAVLWGKAKD 560
>gb|DR090324.1|DR090324 RTAL1_14_G01.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_14_G01_A029 3', mRNA sequence
Length = 621
Score = 115 bits (246), Expect = 4e-025
Identities = 43/117 (36%), Positives = 71/117 (60%)
Frame = -2 / -1
Query: 636 SPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWC 457
+PL+++ +C L LQ +L L+ +PS W + L V++GV GS + +Y+Q C
Sbjct: 417 APLSVATLICFLGALQGTVLGVALVREPSQWALRWDINLLTAVYTGVVGSAIAYYVQGLC 238
Query: 456 ISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
+ ++GP+++ F PL +I V + +L E + VGS++G + + GLY VLWGKA D
Sbjct: 237 MRLKGPVFATAFSPLMMIIVAVMGSIILSEHISVGSVVGGVMIAVGLYAVLWGKAKD 67
>gb|BX252722.1|BX252722 BX252722 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G04, mRNA sequence
Length = 678
Score = 115 bits (245), Expect = 5e-025
Identities = 42/119 (35%), Positives = 75/119 (63%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++++ C +Q ++ +F D W+IHS EL +++G SG+ F +Q WCI
Sbjct: 61 LSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCID 240
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKG 274
GP++ A+++P+ T+ + A+ +L E+ ++G +LGAI +I GLY+VLWGK+ + G
Sbjct: 241 RGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGILGAILIIIGLYLVLWGKSEEKRLG 417
>gb|CX651932.1|CX651932 COLD1_55_F07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_55_F07_A029 5', mRNA sequence
Length = 599
Score = 115 bits (245), Expect = 5e-025
Identities = 45/116 (38%), Positives = 70/116 (60%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+LS MC L TLQ+A L + PS W + +L V+SGV SG+ +YLQ C+
Sbjct: 210 LSLSTLMCFLGTLQAAALGLAVTRKPSDWALGWDIKLLAAVYSGVVSSGIAYYLQGVCMR 389
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP++++ F PL +I + + +L E + +GS+ G + ++ GLY VLWGK D+
Sbjct: 390 SKGPVFASAFSPLMMIIVAIMGSIILSENIFLGSVFGGVLIVIGLYAVLWGKVKDS 557
>gb|DR120591.1|DR120591 RTMG1_30_E08.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E08_A029 5', mRNA sequence
Length = 785
Score = 115 bits (245), Expect = 5e-025
Identities = 45/116 (38%), Positives = 70/116 (60%)
Frame = -2 / +2
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+LS MC L TLQ+A L + PS W + +L V+SGV SG+ +YLQ C+
Sbjct: 161 LSLSTLMCFLGTLQAAALGLAVTRKPSDWALGWDIKLLAAVYSGVVSSGIAYYLQGVCMR 340
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP++++ F PL +I + + +L E + +GS+ G + ++ GLY VLWGK D+
Sbjct: 341 SKGPVFASAFSPLMMIIVAIMGSIILSENIFLGSVFGGVLIVIGLYAVLWGKVKDS 508
>gb|DR091491.1|DR091491 RTAL1_22_A11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_A11_A029 3', mRNA sequence
Length = 929
Score = 114 bits (244), Expect = 7e-025
Identities = 43/118 (36%), Positives = 72/118 (61%)
Frame = -2 / +1
Query: 636 SPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWC 457
+PL+++ +C L LQ +L L+ +PS W + L V++GV GS + +Y+Q C
Sbjct: 235 APLSVATLICFLGALQGTVLGVALVREPSQWALRWDINLLTAVYNGVVGSAIAYYVQGLC 414
Query: 456 ISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+ ++GP+++ F PL +I V + +L E + VGS++G + + GLY VLWGKA D+
Sbjct: 415 MRLKGPVFATAFSPLEMIIVAVMGSIILSEHISVGSVVGGVMIAVGLYAVLWGKAKDS 588
>gb|DR160195.1|DR160195 RTFE1_4_B04.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_4_B04_A029 5', mRNA sequence
Length = 739
Score = 114 bits (244), Expect = 7e-025
Identities = 46/128 (35%), Positives = 80/128 (62%)
Frame = -2 / +1
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+L+A M + T+QS ++ S W+++ +L V+SGV S F++Q++ I +
Sbjct: 136 SLTALMLIQGTMQSFVVALIFERKVSVWKLNWDIKLLSIVYSGVLCSAFAFFVQTYWIRI 315
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGV 268
+GP+++A+F P+ T++ + +L +LH+GSLLGAI +I GLYVVLWGKA D ++
Sbjct: 316 KGPVFAAVFNPVATILVAILELLILHVKLHLGSLLGAIMIIVGLYVVLWGKAQDKSELDT 495
Query: 267 EPEHHSAD 244
+ E + +
Sbjct: 496 DTEKNGLE 519
>gb|CF478827.1|CF478827 RTWW3_15_B07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_B07_A022 3', mRNA sequence
Length = 693
Score = 114 bits (243), Expect = 9e-025
Identities = 42/120 (35%), Positives = 74/120 (61%)
Frame = -2 / -2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+LSA +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 461 SAKLSLSALICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGL 282
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDAN 280
C+ V+GP+++ F PL +I + + +L E++ +GS++G + + GLY VLWGK D+N
Sbjct: 281 CMHVKGPVFATSFSPLSMIIVAIMGSIILSEKIFLGSVVGGVVIAIGLYAVLWGKVKDSN 102
>gb|DR177641.1|DR177641 RTMNUT1_6_B12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_6_B12_A029 5', mRNA sequence
Length = 741
Score = 114 bits (243), Expect = 9e-025
Identities = 45/116 (38%), Positives = 69/116 (59%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+LS MC L TLQ+A L + PS W + L V+SGV SG+ +YLQ C+
Sbjct: 387 LSLSTLMCFLGTLQAAALGLAVTRKPSDWALGWDIRLLAAVYSGVVSSGIAYYLQGVCMR 566
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP++++ F PL +I + + +L E + +GS+ GA+ ++ GLY LWGK D+
Sbjct: 567 SKGPVFASAFSPLMMIIVAIMGSIILSENIFLGSVFGAVLIVIGLYAFLWGKVKDS 734
>gb|CX648453.1|CX648453 COLD1_28_F03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_F03_A029 5', mRNA sequence
Length = 839
Score = 113 bits (241), Expect = 2e-024
Identities = 44/115 (38%), Positives = 69/115 (60%)
Frame = -2 / -1
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+LS MC L TLQ+A L + PS W + +L V+SGV SG+ +YLQ C+
Sbjct: 839 SLSTLMCFLGTLQAAALGLAVTRKPSDWALGWDIKLLAAVYSGVVSSGIAYYLQGVCMRS 660
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP++++ F PL +I + + +L E + +GS+ G + ++ GLY VLWGK D+
Sbjct: 659 KGPVFASAFSPLMMIIVAIMGSIILSENIFLGSVFGGVLIVIGLYAVLWGKVKDS 495
>gb|DR078936.1|DR078936 RTFEPL1_8_A01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_A01_A029 3', mRNA sequence
Length = 831
Score = 113 bits (241), Expect = 2e-024
Identities = 45/116 (38%), Positives = 70/116 (60%)
Frame = -2 / +2
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+ +C+L TLQ+ L L+ DPS W + L V+SGV S V +Y+Q C+
Sbjct: 155 LSLATLICLLGTLQATTLSIALVRDPSKWALGWDINLLTAVYSGVVASAVAYYVQGLCMR 334
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
V+GP+++ F PL +I V + +L E +++GS+LG + + GLY VLW K D+
Sbjct: 335 VKGPVFATAFSPLVMIIVAVMGSVILSENIYLGSVLGGVMIAVGLYAVLW*KLRDS 502
>gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, complete cds
Length = 1651
Score = 113 bits (241), Expect = 2e-024
Identities = 41/119 (34%), Positives = 74/119 (62%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++++ C +Q ++ +F D W+IHS EL +++G SG+ F +Q WCI
Sbjct: 891 LSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCID 1070
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDANKG 274
GP++ A+++P+ T+ + A+ +L E+ ++G + GAI +I GLY+VLWGK+ + G
Sbjct: 1071 RGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLG 1247
>gb|CO363698.1|CO363698 RTK1_11_G02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G02_A029 3', mRNA sequence
Length = 816
Score = 112 bits (240), Expect = 2e-024
Identities = 43/119 (36%), Positives = 72/119 (60%)
Frame = -2 / +3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ +L + +PS W + L V+SGV S + +Y+Q
Sbjct: 57 SAQLSLATLICFLGTLQATVLGVAFVREPSMWALGWDINLLAAVYSGVVSSAIAYYVQGL 236
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ ++GP+++ F PL +I V + +L E +++GS+LG I + GLY VLWGK D+
Sbjct: 237 CMRLKGPVFATAFSPLMMIIVAVMGSIILSENIYLGSVLGGIMISVGLYAVLWGKVKDS 413
>gb|DR056190.1|DR056190 RTCA1_28_D09.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_28_D09_A029 5', mRNA sequence
Length = 514
Score = 112 bits (240), Expect = 2e-024
Identities = 41/118 (34%), Positives = 75/118 (63%)
Frame = -2 / +2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++PL+L+ +C L TLQ+A+L ++ PS W++ L V++GV S + +Y+Q
Sbjct: 20 SAPLSLTTSICFLGTLQAAVLGGAIVRHPSDWKLGWDINLLAAVYAGVVTSAIAYYIQGL 199
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
C+ ++GP+++ F PL +I + ++ +L E + +GS+LG + + AG+Y VLWG+ D
Sbjct: 200 CMRIKGPVFATAFTPLMMIIVAIMSSIILSESILLGSVLGGVMIAAGIYSVLWGQLKD 373
>gb|DR120909.1|DR120909 RTMG1_32_E09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_E09_A029 5', mRNA sequence
Length = 795
Score = 112 bits (240), Expect = 2e-024
Identities = 43/119 (36%), Positives = 72/119 (60%)
Frame = -2 / -1
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ +L + +PS W + L V+SGV S + +Y+Q
Sbjct: 726 SAQLSLATLICFLGTLQATVLGVAFVREPSMWALGWDINLLAAVYSGVVSSAIAYYVQGL 547
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ ++GP+++ F PL +I V + +L E +++GS+LG I + GLY VLWGK D+
Sbjct: 546 CMRLKGPVFATAFSPLMMIIVAVMGSIILSENIYLGSVLGGIMISVGLYAVLWGKVKDS 370
>gb|DR178310.1|DR178310 RTMNUT1_11_A09.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_11_A09_A029 3', mRNA sequence
Length = 770
Score = 112 bits (240), Expect = 2e-024
Identities = 43/119 (36%), Positives = 72/119 (60%)
Frame = -2 / +2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ +L + +PS W + L V+SGV S + +Y+Q
Sbjct: 11 SAQLSLATLICFLGTLQATVLGVAFVREPSMWALGWDINLLAAVYSGVVSSAIAYYVQGL 190
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ ++GP+++ F PL +I V + +L E +++GS+LG I + GLY VLWGK D+
Sbjct: 191 CMRLKGPVFATAFSPLMMIIVAVMGSIILSENIYLGSVLGGIMISVGLYAVLWGKVKDS 367
>gb|CF389151.1|CF389151 RTDR2_13_H05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_H05_A021 5', mRNA
sequence
Length = 666
Score = 111 bits (238), Expect = 5e-024
Identities = 43/119 (36%), Positives = 71/119 (59%)
Frame = -2 / +3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ L ++ DPS W + L V+SGV S + +Y+Q
Sbjct: 27 SAQLSLATLICFLGTLQATALGLAVVRDPSQWALGWDINLLTAVYSGVVASAIAYYVQGL 206
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ V+GP+++ F PL +I + + +L E + +GS+LG + + GLY VLWGK D+
Sbjct: 207 CMRVKGPVFATAFSPLTMIIVAIMGSIILSESIFLGSVLGGVMIATGLYSVLWGKLKDS 383
>gb|CF391378.1|CF391378 RTDR3_1_G11.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G11_A022 5', mRNA
sequence
Length = 741
Score = 111 bits (238), Expect = 5e-024
Identities = 43/119 (36%), Positives = 71/119 (59%)
Frame = -2 / +3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ L ++ DPS W + L V+SGV S + +Y+Q
Sbjct: 39 SAQLSLATLICFLGTLQATALGLAVVRDPSQWALGWDINLLTAVYSGVVASAIAYYVQGL 218
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ V+GP+++ F PL +I + + +L E + +GS+LG + + GLY VLWGK D+
Sbjct: 219 CMRVKGPVFATAFSPLTMIIVAIMGSIILSESIFLGSVLGGVMIATGLYSVLWGKLKDS 395
>gb|CX648312.1|CX648312 COLD1_27_G09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_G09_A029 5', mRNA sequence
Length = 750
Score = 111 bits (238), Expect = 5e-024
Identities = 41/116 (35%), Positives = 71/116 (61%)
Frame = -2 / +2
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+LSA +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q C+ V
Sbjct: 2 SLSALICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGLCMHV 181
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDAN 280
+GP+++ F PL +I + + +L E++ +GS++G + + GLY VLWGK D+N
Sbjct: 182 KGPVFATSFSPLSMIIVAIMGSIILSEKIFLGSVVGGVVIAIGLYAVLWGKVKDSN 349
>gb|DR050366.1|DR050366 RTBOR1_23_A12.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_23_A12_A029 3', mRNA sequence
Length = 701
Score = 111 bits (238), Expect = 5e-024
Identities = 43/119 (36%), Positives = 71/119 (59%)
Frame = -2 / -3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C L TLQ+ L ++ DPS W + L V+SGV S + +Y+Q
Sbjct: 387 SAQLSLATLICFLGTLQATALGLAVVRDPSQWALGWDINLLTAVYSGVVASAIAYYVQGL 208
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ V+GP+++ F PL +I + + +L E + +GS+LG + + GLY VLWGK D+
Sbjct: 207 CMRVKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVLGGVMIATGLYSVLWGKLKDS 31
>gb|DR100079.1|DR100079 STRR1_61_B04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_B04_A033 5', mRNA sequence
Length = 615
Score = 111 bits (238), Expect = 5e-024
Identities = 42/117 (35%), Positives = 76/117 (64%)
Frame = -2 / +3
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+++A+ L+++QSALL + + +AW + E +S + G+G+T+ +Q+WC
Sbjct: 186 LSITAFTTFLASIQSALLTCLTVRESAAWSLKWDIEFISISYSAIIGTGLTYTMQTWCNR 365
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDAN 280
+GPL+ AMFKP+ VI + A L +++HVGS++GA ++ G Y V+WG++ D++
Sbjct: 366 KKGPLFVAMFKPVGIVIAAIAGAIFLGDKIHVGSVVGAFFIVLGFYSVIWGQSKDSD 536
>gb|DR744233.1|DR744233 RTCU1_21_C08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_C08_A029 3', mRNA sequence
Length = 648
Score = 111 bits (238), Expect = 5e-024
Identities = 40/96 (41%), Positives = 67/96 (69%)
Frame = -2 / +1
Query: 579 LVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVI 400
+ +F DPS W++HS EL +++G+ SG+ F +Q WCI GP++ A+++P+ T+
Sbjct: 1 IAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIA 180
Query: 399 TTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKA 292
V A+ +L E+ ++G ++GAI +IAGLY+VLWGK+
Sbjct: 181 VAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKS 288
>gb|DR078702.1|DR078702 RTFEPL1_6_G09.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_G09_A029 3', mRNA sequence
Length = 766
Score = 111 bits (236), Expect = 8e-024
Identities = 41/115 (35%), Positives = 69/115 (60%)
Frame = -2 / +2
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+++ +C L LQ +L L+ +PS W + L V++GV GS + +YLQ C+ +
Sbjct: 110 SVATLICFLGALQGTVLGVALVREPSQWALRWDINLLTAVYTGVVGSAIAYYLQGLCMRL 289
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP+++ F PL +I + + +L E + VGS++G + + GLY VLWGKA D+
Sbjct: 290 KGPVFATAFSPLMMIIVAIMGSIILSEHVFVGSVVGGVMIAVGLYAVLWGKAKDS 454
>gb|DR078494.1|DR078494 RTFEPL1_5_C05.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C05_A029 3', mRNA sequence
Length = 751
Score = 110 bits (235), Expect = 1e-023
Identities = 42/115 (36%), Positives = 69/115 (60%)
Frame = -2 / +2
Query: 627 ALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISV 448
+L+ +C L TLQ+ +L + +PS W + L V+SGV S + +Y+Q C+ +
Sbjct: 2 SLATLICFLGTLQATVLGVAFVREPSMWALGWDINLLAAVYSGVVSSAIAYYVQGLCMRL 181
Query: 447 RGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP+++ F PL +I V + +L E +++GS+LG I + GLY VLWGK D+
Sbjct: 182 KGPVFATAFSPLMMIIVAVMGSIILSENIYLGSVLGGIMISVGLYAVLWGKVKDS 346
>gb|DR120510.1|DR120510 RTMG1_30_E08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_30_E08_A029 3', mRNA sequence
Length = 860
Score = 110 bits (234), Expect = 2e-023
Identities = 42/110 (38%), Positives = 66/110 (60%)
Frame = -2 / +2
Query: 612 MCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLY 433
MC L TLQ+A L + PS W + +L V+SGV SG+ +YLQ C+ +GP++
Sbjct: 5 MCFLGTLQAAALGLAVTRKPSDWALGWDIKLLAAVYSGVVSSGIAYYLQGVCMRSKGPVF 184
Query: 432 SAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
++ F PL +I + + +L E + +GS+ G + ++ GLY VLWGK D+
Sbjct: 185 ASAFSPLMMIIVAIMGSIILSENIFLGSVFGGVLIVIGLYAVLWGKVKDS 334
>gb|DR744005.1|DR744005 RTCU1_19_D04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_D04_A029 5', mRNA sequence
Length = 784
Score = 109 bits (232), Expect = 3e-023
Identities = 40/116 (34%), Positives = 72/116 (62%)
Frame = -2 / -2
Query: 633 PLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCI 454
PL+L+ +C L TLQ+ +L ++ D S W++ L V++GV S + +Y+Q C+
Sbjct: 783 PLSLTTSICFLGTLQATVLGGAIVRDLSYWKLGWDINLLAAVYAGVVTSAIAYYIQGLCM 604
Query: 453 SVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGD 286
++GP+++ F PL +I + ++ +L E + +GS+LG + + AG+Y VLWG+ D
Sbjct: 603 RIKGPVFATAFTPLMMIIVAIMSSIILHESILLGSVLGGVMIAAGIYSVLWGQLKD 436
>gb|DR110153.1|DR110153 RTS1_9_E09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_E09_A029 3', mRNA sequence
Length = 792
Score = 105 bits (224), Expect(2) = 3e-023
Identities = 37/91 (40%), Positives = 60/91 (65%)
Frame = -2 / +1
Query: 552 SAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVL 373
S W I EL V++G+ S F++Q+WC+ ++GP+++A+F PL T++ + +L
Sbjct: 295 SVWTIGWNLELLSYVYTGLICSAFAFFVQTWCVHLKGPVFAAVFNPLNTIVVAILECFIL 474
Query: 372 REELHVGSLLGAIAVIAGLYVVLWGKAGDAN 280
LHVGS++G++ ++ GLY VLWGKA D N
Sbjct: 475 HASLHVGSVVGSVLIVGGLYSVLWGKAKDHN 567
Score = 23.1 bits (44), Expect(2) = 3e-023
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALL 577
L+L+A MC+ LQS ++
Sbjct: 214 LSLTAMMCMFGALQSGVI 267
>gb|CO197601.1|CO197601 GEO1_7_D07.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_D07_A029 5', mRNA sequence
Length = 695
Score = 108 bits (231), Expect = 4e-023
Identities = 41/110 (37%), Positives = 66/110 (60%)
Frame = -2 / -3
Query: 612 MCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLY 433
+C L TLQ+ +L + +PS W + L V+SGV S + +Y+Q C+ ++GP++
Sbjct: 687 ICFLGTLQATVLGVAFVREPSMWALGWDINLLAAVYSGVVSSAIAYYVQGLCMRLKGPVF 508
Query: 432 SAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+ F PL +I V + +L E +++GS+LG I + GLY VLWGK D+
Sbjct: 507 ATAFSPLMMIIVAVMGSIILSENIYLGSVLGGIMISVGLYAVLWGKVKDS 358
>gb|CF393510.1|CF393510 RTDR3_13_C10.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_C10_A022 5', mRNA
sequence
Length = 818
Score = 106 bits (227), Expect = 1e-022
Identities = 38/119 (31%), Positives = 71/119 (59%)
Frame = -2 / +2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 224 SAQLSLATLICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGL 403
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E +++GS++G + + GLY VLWGK D+
Sbjct: 404 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIYLGSVVGGVLIAIGLYAVLWGKVKDS 580
>gb|CO370329.1|CO370329 RTK1_67_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_E03_A029 3', mRNA sequence
Length = 848
Score = 106 bits (227), Expect = 1e-022
Identities = 39/119 (32%), Positives = 71/119 (59%)
Frame = -2 / -3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+A +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 705 SAQLSLAALICFMGTIQATVLSLAVVRDSSQWALGWDVNLLTAVYSGVVASAIAYYVQGL 526
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E + +GS++G + + GLY VLWGK D+
Sbjct: 525 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVVGGVLIAIGLYAVLWGKVKDS 349
>gb|CX646887.1|CX646887 COLD1_12_D07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D07_A029 3', mRNA sequence
Length = 868
Score = 106 bits (227), Expect = 1e-022
Identities = 39/119 (32%), Positives = 71/119 (59%)
Frame = -2 / +3
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+A +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 24 SAQLSLAALICFMGTIQATVLSLAVVRDSSQWALGWDVNLLTAVYSGVVASAIAYYVQGL 203
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E + +GS++G + + GLY VLWGK D+
Sbjct: 204 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVVGGVLIAIGLYAVLWGKVKDS 380
>gb|CX646969.1|CX646969 COLD1_12_D07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D07_A029 5', mRNA sequence
Length = 867
Score = 106 bits (227), Expect = 1e-022
Identities = 39/119 (32%), Positives = 71/119 (59%)
Frame = -2 / +2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+A +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 194 SAQLSLAALICFMGTIQATVLSLAVVRDSSQWALGWDVNLLTAVYSGVVASAIAYYVQGL 373
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E + +GS++G + + GLY VLWGK D+
Sbjct: 374 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVVGGVLIAIGLYAVLWGKVKDS 550
>gb|DR052436.1|DR052436 RTCA1_4_D02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_D02_A029 5', mRNA sequence
Length = 870
Score = 106 bits (227), Expect = 1e-022
Identities = 38/119 (31%), Positives = 71/119 (59%)
Frame = -2 / +1
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 64 SAQLSLATLICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGL 243
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E +++GS++G + + GLY VLWGK D+
Sbjct: 244 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIYLGSVVGGVLIAIGLYAVLWGKVKDS 420
>gb|DR110715.1|DR110715 RTS1_12_B08.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_B08_A029 5', mRNA sequence
Length = 882
Score = 106 bits (227), Expect = 1e-022
Identities = 39/119 (32%), Positives = 71/119 (59%)
Frame = -2 / +1
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+A +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 280 SAQLSLAALICFMGTIQATVLSLAVVRDSSQWALGWDVNLLTAVYSGVVASAIAYYVQGL 459
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E + +GS++G + + GLY VLWGK D+
Sbjct: 460 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVVGGVLIAIGLYAVLWGKVKDS 636
>gb|DR181165.1|DR181165 RTMNUT1_37_E10.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_37_E10_A029 3', mRNA sequence
Length = 827
Score = 106 bits (227), Expect = 1e-022
Identities = 38/119 (31%), Positives = 71/119 (59%)
Frame = -2 / -2
Query: 639 TSPLALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSW 460
++ L+L+ +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q
Sbjct: 595 SAQLSLATLICFMGTIQATVLSLAVVRDSSQWALGWDINLLTAVYSGVVASAIAYYVQGL 416
Query: 459 CISVRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
C+ +GP+++ F PL +I + + +L E +++GS++G + + GLY VLWGK D+
Sbjct: 415 CMRAKGPVFATAFSPLMMIIVAIMGSIILSESIYLGSVVGGVLIAIGLYAVLWGKVKDS 239
>gb|DR110633.1|DR110633 RTS1_12_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_B08_A029 3', mRNA sequence
Length = 853
Score = 106 bits (226), Expect = 2e-022
Identities = 39/116 (33%), Positives = 69/116 (59%)
Frame = -2 / +1
Query: 630 LALSAWMCVLSTLQSALLVSFLLPDPSAWRIHSLFELSCCVFSGVFGSGVTFYLQSWCIS 451
L+L+A +C + T+Q+ +L ++ D S W + L V+SGV S + +Y+Q C+
Sbjct: 4 LSLAALICFMGTIQATVLSLAVVRDSSQWALGWDVNLLTAVYSGVVASAIAYYVQGLCMR 183
Query: 450 VRGPLYSAMFKPLCTVITTVFAAAVLREELHVGSLLGAIAVIAGLYVVLWGKAGDA 283
+GP+++ F PL +I + + +L E + +GS++G + + GLY VLWGK D+
Sbjct: 184 AKGPVFATAFSPLMMIIVAIMGSIILSESIFLGSVVGGVLIAIGLYAVLWGKVKDS 351
>gb|CO160570.1|CO160570 FLD1_22_B02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_22_B02_A029 3', mRNA sequence
Length = 749
Score = 105 bits (223), Expect = 5e-022
Identities = 42/87 (48%), Positives = 57/87 (65%)
Frame = -2 / -2
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLRE 367
W I F+L V+SG+ S + Y+Q+WCIS RGPL+ A+F PL TVIT + +L
Sbjct: 640 WAIGWNFKLLGVVYSGIMCSALGMYVQAWCISKRGPLFVAIFSPLGTVITAIMELIILHV 461
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGD 286
L +GS++GAI ++ GLY LWGKA D
Sbjct: 460 YLRLGSVVGAIVIVLGLYTALWGKAND 380
>gb|DR072348.1|DR072348 RTDK1_25_E08.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_25_E08_A029 5', mRNA sequence
Length = 591
Score = 105 bits (223), Expect = 5e-022
Identities = 42/87 (48%), Positives = 57/87 (65%)
Frame = -2 / -1
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLRE 367
W I F+L V+SG+ S + Y+Q+WCIS RGPL+ A+F PL TVIT + +L
Sbjct: 561 WAIGWNFKLLGVVYSGIMCSALGMYVQAWCISKRGPLFVAIFSPLGTVITAIMELIILHV 382
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGD 286
L +GS++GAI ++ GLY LWGKA D
Sbjct: 381 YLRLGSVVGAIVIVLGLYTALWGKAND 301
>gb|CF395826.1|CF395826 RTDS2_17_D07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_D07_A021 5', mRNA sequence
Length = 780
Score = 104 bits (222), Expect = 7e-022
Identities = 41/102 (40%), Positives = 61/102 (59%)
Frame = -2 / +3
Query: 546 WRIHSLFELSCCVFSGVFGSGVTFYLQSWCISVRGPLYSAMFKPLCTVITTVFAAAVLRE 367
WRI EL V++G+ S + +LQ+W I+ +GP++ A+F P+ T++T +F +L
Sbjct: 75 WRIGWNMELLSVVYAGIICSALGMFLQAWSITQKGPVFVAIFNPVGTIVTAIFELIILHL 254
Query: 366 ELHVGSLLGAIAVIAGLYVVLWGKAGDANKGGVEPEHHSADL 241
LHVGS++GA + GLY LWGKA D E HH+ L
Sbjct: 255 YLHVGSVVGATLIAVGLYSALWGKANDTPVEDAEESHHNIPL 380
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 370,298,284
Number of Sequences: 355925
Number of extensions: 5052512
Number of successful extensions: 45096
Number of sequences better than 1.0e-020: 58
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11322705450
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)