TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203235.2.1
(637 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF476506.1|CF476506 RTWW3_1_C09.g1_A022 Well-watered lob... 175 2e-043
gb|DR384632.1|DR384632 RTHG1_3_B11.g1_A029 Roots plus added... 172 2e-042
gb|CF390662.1|CF390662 RTDR2_20_D03.g1_A021 Loblolly pine r... 171 3e-042
gb|CO367342.1|CO367342 RTK1_33_E12.g1_A029 Roots minus pota... 171 3e-042
gb|CO367804.1|CO367804 RTK1_36_F02.g1_A029 Roots minus pota... 171 3e-042
gb|CF392847.1|CF392847 RTDR3_19_G07.g1_A022 Loblolly pine r... 171 4e-042
gb|DR110236.1|DR110236 RTS1_9_E09.g1_A029 Roots minus sulfu... 168 3e-041
gb|CV032789.1|CV032789 RTNACL1_18_H01.b1_A029 Roots plus ad... 167 7e-041
gb|CF474025.1|CF474025 RTWW2_18_D06.b1_A021 Well-watered lo... 166 1e-040
gb|DR167860.1|DR167860 RTPHOS1_21_D01.g1_A029 Roots minus p... 166 1e-040
gb|DR687035.1|DR687035 EST1077113 Normalized pine embryo li... 165 3e-040
gb|CO171061.1|CO171061 NDL1_18_F06.g1_A029 Needles control ... 165 3e-040
gb|DR092668.1|DR092668 STRR1_2_H07.g1_A033 Stem Response Re... 165 3e-040
gb|DR682638.1|DR682638 EST1072713 Normalized pine embryo li... 164 5e-040
gb|CO197528.1|CO197528 GEO1_7_D07.b1_A029 Root gravitropism... 162 2e-039
gb|CO363787.1|CO363787 RTK1_11_G02.g1_A029 Roots minus pota... 162 2e-039
gb|DR071708.1|DR071708 RTDK1_21_D03.g1_A029 Roots, dark Pin... 162 2e-039
gb|CF470628.1|CF470628 RTDS1_13_E12.g1_A015 Drought-stresse... 161 3e-039
gb|CO167692.1|CO167692 FLD1_70_C03.g1_A029 Root flooded Pin... 160 8e-039
gb|DR385454.1|DR385454 RTHG1_8_F06.g1_A029 Roots plus added... 160 8e-039
gb|DR025171.1|DR025171 STRS1_70_C04.b1_A034 Shoot tip pitch... 158 3e-038
gb|CO166712.1|CO166712 FLD1_64_A09.b1_A029 Root flooded Pin... 157 6e-038
gb|BQ696558.1|BQ696558 NXPV_042_F03_F NXPV (Nsf Xylem Plani... 156 1e-037
gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered lob... 154 7e-037
gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus ad... 154 7e-037
gb|DR091559.1|DR091559 RTAL1_22_A11.g1_A029 Roots plus adde... 154 7e-037
gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response R... 154 7e-037
gb|BX254061.1|BX254061 BX254061 Pinus pinaster differenciat... 152 3e-036
gb|DR120323.1|DR120323 RTMG1_29_A06.b1_A029 Roots minus mag... 151 5e-036
gb|CX648371.1|CX648371 COLD1_28_F03.b1_A029 Root cold Pinus... 149 2e-035
gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine r... 149 2e-035
gb|DT631215.1|DT631215 EST1146146 Normalized pine embryo li... 148 4e-035
gb|BG485786.1|BG485786 NXPV_038_G10_F NXPV (Nsf Xylem Plani... 140 1e-032
gb|CF478049.1|CF478049 RTWW3_17_E06.g1_A022 Well-watered lo... 84 6e-032
gb|BG485740.1|BG485740 NXPV_038_C08_F NXPV (Nsf Xylem Plani... 136 1e-031
gb|CO369832.1|CO369832 RTK1_54_A12.g1_A029 Roots minus pota... 136 1e-031
gb|DR384820.1|DR384820 RTHG1_4_F11.g1_A029 Roots plus added... 134 6e-031
gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, ... 77 3e-029
gb|DR078570.1|DR078570 RTFEPL1_5_C05.g1_A029 Roots plus add... 127 5e-029
gb|BX254250.1|BX254250 BX254250 Pinus pinaster differenciat... 127 7e-029
gb|DR112232.1|DR112232 RTS1_26_F04.g1_A029 Roots minus sulf... 85 2e-028
gb|CV033929.1|CV033929 RTNACL1_37_B03.g1_A029 Roots plus ad... 87 6e-028
gb|DR078785.1|DR078785 RTFEPL1_6_G09.g1_A029 Roots plus add... 88 7e-027
gb|BQ695720.1|BQ695720 NXPV_031_H12_F NXPV (Nsf Xylem Plani... 119 2e-026
gb|BX250922.1|BX250922 BX250922 Pinus pinaster differenciat... 114 7e-025
gb|BX784100.1|BX784100 BX784100 Pinus pinaster differenciat... 114 7e-025
gb|CF387362.1|CF387362 RTDR1_12_G11.g1_A015 Loblolly pine r... 112 3e-024
gb|CF471103.1|CF471103 RTDS1_16_C03.g1_A015 Drought-stresse... 112 3e-024
gb|CV031904.1|CV031904 RTNACL1_4_B04.g1_A029 Roots plus add... 112 3e-024
gb|DT625230.1|DT625230 EST1159505 Sequencing ESTs from lobl... 112 3e-024
gb|CF398243.1|CF398243 RTDS3_24_B05.b1_A022 Drought-stresse... 107 8e-023
gb|CF399047.1|CF399047 RTDS3_9_G06.b1_A022 Drought-stressed... 107 8e-023
gb|CF399147.1|CF399147 RTDS3_9_G06.g1_A022 Drought-stressed... 104 8e-022
>gb|CF476506.1|CF476506 RTWW3_1_C09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_C09_A022 5', mRNA sequence
Length = 638
Score = 175 bits (377), Expect = 2e-043
Identities = 68/153 (44%), Positives = 103/153 (67%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 110 PYVAMISLQFGYAGMNIISKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 289
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F++IFVL LLG + N Y+ LK TSPT+ ++ N + +MTFV+A++ RME V++K
Sbjct: 290 FSIFLQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALLFRMETVNIK 469
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
LR AK+AGT+V AG MTLYKG + LW
Sbjct: 470 KLRSQAKIAGTIVCVAGAMLMTLYKGPIVPMLW 568
>gb|DR384632.1|DR384632 RTHG1_3_B11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_B11_A029 5', mRNA sequence
Length = 743
Score = 172 bits (370), Expect = 2e-042
Identities = 69/153 (45%), Positives = 100/153 (65%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ RPK+T
Sbjct: 162 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKARPKLT 341
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ ++ N + +MTFVIA+I RME V++K
Sbjct: 342 FPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVIALIFRMERVNIK 521
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+LR AK+ GT+V G MTLYKG + LW
Sbjct: 522 NLRSQAKIVGTIVCVGGAMLMTLYKGPIVPMLW 620
>gb|CF390662.1|CF390662 RTDR2_20_D03.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_20_D03_A021 5', mRNA
sequence
Length = 759
Score = 171 bits (369), Expect = 3e-042
Identities = 68/153 (44%), Positives = 101/153 (66%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 135 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 314
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ ++ N + +MTFV+A+I RME V++K
Sbjct: 315 FPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIK 494
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+LR AK+ GT+V G MTLYKG + LW
Sbjct: 495 NLRSQAKIVGTIVCVGGAMLMTLYKGPIVPMLW 593
>gb|CO367342.1|CO367342 RTK1_33_E12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_33_E12_A029 5', mRNA sequence
Length = 765
Score = 171 bits (369), Expect = 3e-042
Identities = 68/153 (44%), Positives = 101/153 (66%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 96 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 275
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ ++ N + +MTFV+A+I RME V++K
Sbjct: 276 FPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIK 455
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+LR AK+ GT+V G MTLYKG + LW
Sbjct: 456 NLRSQAKIVGTIVCVGGAMLMTLYKGPIVPMLW 554
>gb|CO367804.1|CO367804 RTK1_36_F02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_F02_A029 5', mRNA sequence
Length = 751
Score = 171 bits (369), Expect = 3e-042
Identities = 68/153 (44%), Positives = 101/153 (66%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 124 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 303
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ ++ N + +MTFV+A+I RME V++K
Sbjct: 304 FPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIK 483
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+LR AK+ GT+V G MTLYKG + LW
Sbjct: 484 NLRSQAKIVGTIVCVGGAMLMTLYKGPIVPMLW 582
>gb|CF392847.1|CF392847 RTDR3_19_G07.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_19_G07_A022 5', mRNA
sequence
Length = 843
Score = 171 bits (368), Expect = 4e-042
Identities = 66/153 (43%), Positives = 102/153 (66%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH + V++ PFA+++E+ +RPK+T
Sbjct: 149 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAVATVVLAPFAFFIERKVRPKLT 328
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ ++ N + +MTF++A++ RME V++K
Sbjct: 329 FHIFCQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVLPAMTFMMALLFRMEKVNIK 508
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+LR AK+ GT+V G MTLYKG + LW
Sbjct: 509 NLRSQAKIVGTIVCVVGAILMTLYKGPIVPMLW 607
>gb|DR110236.1|DR110236 RTS1_9_E09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_E09_A029 5', mRNA sequence
Length = 918
Score = 168 bits (362), Expect = 3e-041
Identities = 68/155 (43%), Positives = 100/155 (64%)
Frame = +2 / +1
Query: 131 RYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRP 310
++ PH+ V Q+ Y M +T+ A G+N +V++TYR ++ + I P AY LE+ RP
Sbjct: 58 KFKPHLAQVAVQIAYAGMNVLTKLALADGMNHFVFVTYRQIIATLAIAPLAYVLERKQRP 237
Query: 311 KMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIV 490
MTL +F +IF+L+L G+++ N YF L YT+ TF + N I +TFV+A +LR E V
Sbjct: 238 PMTLSIFFQIFLLALGGIAINQNFYFAGLNYTNSTFAAATTNLIPVVTFVMATVLRYENV 417
Query: 491 DVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSL 595
+++SLRG+AKV GT+V G MTLYKG+ I L
Sbjct: 418 NIRSLRGLAKVVGTIVCVGGAMVMTLYKGSVIKML 522
>gb|CV032789.1|CV032789 RTNACL1_18_H01.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H01_A029 3', mRNA sequence
Length = 788
Score = 167 bits (359), Expect = 7e-041
Identities = 65/153 (42%), Positives = 99/153 (64%)
Frame = +2 / -3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N YV + YRH + + PFA+++E+ +RPK+T
Sbjct: 657 PYVAMISMQFGYAGMNIITKVSLNRGMNHYVLVVYRHAAATIALAPFAFFVERKVRPKLT 478
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
F ++FVL LLG L N Y+ LK T+PTF ++ N + +MTFV+A++ RME V++K
Sbjct: 477 FYTFCQMFVLGLLGPVLDQNFYYLGLKLTTPTFACALSNLLPAMTFVMALLFRMEKVNIK 298
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
++R AK+ GT++S G MTLYKG + W
Sbjct: 297 NIRSQAKIVGTILSVGGAMLMTLYKGPVVPMPW 199
>gb|CF474025.1|CF474025 RTWW2_18_D06.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_D06_A021 3', mRNA sequence
Length = 698
Score = 166 bits (358), Expect = 1e-040
Identities = 68/176 (38%), Positives = 103/176 (58%)
Frame = +2 / -2
Query: 59 RGRNIMAEREVVEXXXXXXXXLWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYI 238
R +A V E ++ + P++ M+ Q Y M IT+ + G++ YV +
Sbjct: 643 RKARALAMASVAESRRSRLSRVFEKSKPYIAMISLQFGYAGMNIITKVSLTNGMSHYVLV 464
Query: 239 TYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTF 418
YRH + ++ PFA+++E+ +RPK+T +F +IF L LLG + N Y+ LKYTSPTF
Sbjct: 463 VYRHAVATAVMAPFAFFVERKVRPKITFSIFCQIFALGLLGPVIDQNFYYAGLKYTSPTF 284
Query: 419 VTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
++ N + +MTFV+A + RME VD+K +R K+AGTVV G MTLYKG +
Sbjct: 283 ACAMSNVLPAMTFVMAALFRMEKVDIKMVRSQTKIAGTVVCVGGAMLMTLYKGPIV 116
>gb|DR167860.1|DR167860 RTPHOS1_21_D01.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_D01_A029 5', mRNA sequence
Length = 623
Score = 166 bits (358), Expect = 1e-040
Identities = 68/176 (38%), Positives = 103/176 (58%)
Frame = +2 / +3
Query: 59 RGRNIMAEREVVEXXXXXXXXLWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYI 238
R +A V E ++ + P++ M+ Q Y M IT+ + G++ YV +
Sbjct: 30 RKARALAMASVAESRRSRLSRVFEKSKPYIAMISLQFGYAGMNIITKVSLTNGMSHYVLV 209
Query: 239 TYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTF 418
YRH + ++ PFA+++E+ +RPK+T +F +IF L LLG + N Y+ LKYTSPTF
Sbjct: 210 VYRHAVATAVMAPFAFFVERKVRPKITFSIFCQIFALGLLGPVIDQNFYYAGLKYTSPTF 389
Query: 419 VTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
++ N + +MTFV+A + RME VD+K +R K+AGTVV G MTLYKG +
Sbjct: 390 ACAMSNVLPAMTFVMAALFRMEKVDIKMVRSQTKIAGTVVCVGGAMLMTLYKGPIV 557
>gb|DR687035.1|DR687035 EST1077113 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM57 3' end, mRNA sequence
Length = 669
Score = 165 bits (355), Expect = 3e-040
Identities = 65/166 (39%), Positives = 104/166 (62%)
Frame = +2 / +1
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
L ++ P++ M+ Q Y M +T+ + N+G+N +V + YRH V++ PFA+++E+
Sbjct: 124 LLQKSKPYIAMISLQFGYAGMNILTKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFVERK 303
Query: 302 LRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRM 481
+RPK+T +F + FVL LLG + N+Y+ LK TSPT+ +++ N + +MTFV+A+I RM
Sbjct: 304 VRPKLTFSIFCQSFVLGLLGPVIDQNLYYLGLKLTSPTYASALSNVLPAMTFVMALIFRM 483
Query: 482 EIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIA 619
E +++K R AK+ GT+V G MTLYKG + W Q A
Sbjct: 484 ERLNIKKRRSQAKIVGTIVCVVGAILMTLYKGPIVRMFWSPHHQSA 621
>gb|CO171061.1|CO171061 NDL1_18_F06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F06_A029 5', mRNA sequence
Length = 824
Score = 165 bits (354), Expect = 3e-040
Identities = 62/151 (41%), Positives = 98/151 (64%)
Frame = +2 / +2
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ PH+ ++ Q+CY M +T A G+N ++++ YR + ++++ PFAY+LE+ RP
Sbjct: 65 FKPHIAQLMVQVCYAGMNILTRLALEDGMNHFIFVCYRQAVASLVLSPFAYFLERSERPA 244
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
MT +F EIF L+ +G+++ N+YF L+YTS TF ++ N I +TFV+A RME V+
Sbjct: 245 MTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTFRMEHVN 424
Query: 494 VKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
++S+ G AKV GT+V G MTLYKG +
Sbjct: 425 IRSIYGQAKVVGTLVCVGGAMVMTLYKGPVL 517
>gb|DR092668.1|DR092668 STRR1_2_H07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_2_H07_A033 5', mRNA sequence
Length = 868
Score = 165 bits (354), Expect = 3e-040
Identities = 62/151 (41%), Positives = 98/151 (64%)
Frame = +2 / +1
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ PH+ ++ Q+CY M +T A G+N ++++ YR + ++++ PFAY+LE+ RP
Sbjct: 127 FKPHIAQLMVQVCYAGMNILTRLALEDGMNHFIFVCYRQAVASLVLSPFAYFLERSERPA 306
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
MT +F EIF L+ +G+++ N+YF L+YTS TF ++ N I +TFV+A RME V+
Sbjct: 307 MTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTFRMEHVN 486
Query: 494 VKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
++S+ G AKV GT+V G MTLYKG +
Sbjct: 487 IRSIYGQAKVVGTLVCVGGAMVMTLYKGPVL 579
>gb|DR682638.1|DR682638 EST1072713 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB20 3' end, mRNA sequence
Length = 767
Score = 164 bits (353), Expect = 5e-040
Identities = 62/151 (41%), Positives = 98/151 (64%)
Frame = +2 / +2
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ PH+ ++ Q+CY M +T A G+N ++++ YR + ++++ PFAY+LE+ RP
Sbjct: 218 FKPHIAQLMVQVCYAGMNILTRLALEDGMNHFIFVCYRQAVASLVLSPFAYFLERSERPV 397
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
MT +F EIF L+ +G+++ N+YF L+YTS TF ++ N I +TFV+A RME V+
Sbjct: 398 MTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTFRMEHVN 577
Query: 494 VKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
++S+ G AKV GT+V G MTLYKG +
Sbjct: 578 IRSIYGQAKVVGTLVCVGGAMVMTLYKGPVL 670
>gb|CO197528.1|CO197528 GEO1_7_D07.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_D07_A029 3', mRNA sequence
Length = 768
Score = 162 bits (348), Expect = 2e-039
Identities = 63/153 (41%), Positives = 98/153 (64%)
Frame = +2 / -3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 610 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 431
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L LLG L N Y+ LK TSPT+ ++ N + +MTFVIA++ RME V++K
Sbjct: 430 FSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFRMERVNIK 251
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+R AK+ GT+V G MTLYKG + W
Sbjct: 250 QVRSQAKILGTIVCVGGAMLMTLYKGPLVQMFW 152
>gb|CO363787.1|CO363787 RTK1_11_G02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G02_A029 5', mRNA sequence
Length = 746
Score = 162 bits (348), Expect = 2e-039
Identities = 63/153 (41%), Positives = 98/153 (64%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 151 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 330
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L LLG L N Y+ LK TSPT+ ++ N + +MTFVIA++ RME V++K
Sbjct: 331 FSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFRMERVNIK 510
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+R AK+ GT+V G MTLYKG + W
Sbjct: 511 QVRSQAKILGTIVCVGGAMLMTLYKGPLVQMFW 609
>gb|DR071708.1|DR071708 RTDK1_21_D03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_D03_A029 5', mRNA sequence
Length = 724
Score = 162 bits (348), Expect = 2e-039
Identities = 63/153 (41%), Positives = 98/153 (64%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 143 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 322
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L LLG L N Y+ LK TSPT+ ++ N + +MTFVIA++ RME V++K
Sbjct: 323 FSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFRMERVNIK 502
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+R AK+ GT+V G MTLYKG + W
Sbjct: 503 QVRSQAKILGTIVCVGGAMLMTLYKGPLVQMFW 601
>gb|CF470628.1|CF470628 RTDS1_13_E12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E12_A015 5', mRNA sequence
Length = 716
Score = 161 bits (347), Expect = 3e-039
Identities = 66/159 (41%), Positives = 100/159 (62%)
Frame = +2 / +1
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
L + P+V M+ Q Y M I++ + N+G++ +V + YR + V++ PFA++LE+
Sbjct: 97 LIEKSTPYVAMISLQFGYAGMNIISKVSLNRGMSHFVLVVYRQAVATVVLAPFAFFLERK 276
Query: 302 LRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRM 481
+RPK+T +F +IFVL LLG + N + LK TSPT+ ++ N + MTFVIA++LRM
Sbjct: 277 MRPKLTFSIFCQIFVLGLLGPVIDQNFSYLGLKLTSPTYACALSNVLPCMTFVIALLLRM 456
Query: 482 EIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
E V++K LR AK+ GT+V G MTLYKG + W
Sbjct: 457 ERVNIKKLRSGAKLVGTIVCVGGAMLMTLYKGPIVRMFW 573
>gb|CO167692.1|CO167692 FLD1_70_C03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_C03_A029 5', mRNA sequence
Length = 650
Score = 160 bits (344), Expect = 8e-039
Identities = 62/153 (40%), Positives = 97/153 (63%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ A N+G+N +V + YR + V++ PFA++ E+ +RPK+
Sbjct: 1 PYVAMIFLQFGYAGMAIISKVALNRGMNHFVLVVYRQTVATVVLAPFAFFFERKVRPKLK 180
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LL + N Y+ LK TSPT+ +++N + +MTFV+A++ RME +++K
Sbjct: 181 FSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLINVLPAMTFVMALLFRMESLNIK 360
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
LR AK+ GT+V G MTLYKG + W
Sbjct: 361 KLRSQAKIVGTIVCVGGAMLMTLYKGPILQMHW 459
>gb|DR385454.1|DR385454 RTHG1_8_F06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F06_A029 5', mRNA sequence
Length = 821
Score = 160 bits (344), Expect = 8e-039
Identities = 62/153 (40%), Positives = 97/153 (63%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ A N+G+N +V + YR + V++ PFA++ E+ +RPK+
Sbjct: 61 PYVAMISLQFGYAGMAIISKVALNRGMNHFVLVVYRQTVATVVLAPFAFFFERNVRPKLK 240
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LL + N Y+ LK TSPT+ +++N + +MTFV+A++ RME +++K
Sbjct: 241 FSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLINVLPAMTFVMALLFRMESLNIK 420
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
LR AK+ GT+V G MTLYKG + W
Sbjct: 421 KLRSQAKIVGTIVCVGGAMLMTLYKGPILQMHW 519
>gb|DR025171.1|DR025171 STRS1_70_C04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_C04_A034 3', mRNA sequence
Length = 625
Score = 158 bits (340), Expect = 3e-038
Identities = 60/151 (39%), Positives = 96/151 (63%)
Frame = +2 / -1
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ P + ++ Q+CY M +T A G+N ++++ YR + ++++ PFAY+L++ RP
Sbjct: 457 FKPRIAQLMVQVCYAGMNILTRLALEDGMNHFIFVCYRQAVASLVLSPFAYFLQRSERPA 278
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
MT +F EIF L+ +G+++ N+YF L+YTS TF ++ N I +TFV+A RME V+
Sbjct: 277 MTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTFRMEHVN 98
Query: 494 VKSLRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ S+ G AKV GT+V G MTLYKG +
Sbjct: 97 ITSIYGQAKVVGTLVCVGGAMVMTLYKGPVL 5
>gb|CO166712.1|CO166712 FLD1_64_A09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_64_A09_A029 3', mRNA sequence
Length = 789
Score = 157 bits (338), Expect = 6e-038
Identities = 62/159 (38%), Positives = 99/159 (62%)
Frame = +2 / -1
Query: 122 LWRRYAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKG 301
L+ + P+V M+ Q Y M I++ A N+G+N +V + YR + V++ PFA++ E+
Sbjct: 768 LFEKGKPYVAMISLQFGYAGMTIISKVALNRGMNHFVLVVYRQTVATVVLAPFAFFFERN 589
Query: 302 LRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRM 481
+RPK+ +F +IFVL LL + N Y+ LK TSPT+ +++N + +MTFV+A++ RM
Sbjct: 588 VRPKLKFSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLMNILPAMTFVMALLFRM 409
Query: 482 EIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
E +++K LR AK+ G +V G MTLYKG + W
Sbjct: 408 ESLNIKKLRSQAKIVGMIVCVGGAMLMTLYKGPILQMHW 292
>gb|BQ696558.1|BQ696558 NXPV_042_F03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_042_F03 5' similar to Arabidopsis
thaliana sequence At5g07050 MtN21 nodulin protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 645
Score = 156 bits (336), Expect = 1e-037
Identities = 61/153 (39%), Positives = 96/153 (62%)
Frame = +2 / +1
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 148 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 327
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L LLG L N Y+ LK TSPT+ ++ N + +MTFVIA++ ME V++K
Sbjct: 328 FSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFXMERVNIK 507
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+R AK+ GT+V G MTLYK + W
Sbjct: 508 QVRSQAKILGTIVCVXGAXLMTLYKXPLVQMFW 606
>gb|CF477126.1|CF477126 RTWW3_5_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_5_G08_A022 5', mRNA sequence
Length = 735
Score = 154 bits (330), Expect = 7e-037
Identities = 61/152 (40%), Positives = 96/152 (63%)
Frame = +2 / +1
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 142 HVAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 321
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++
Sbjct: 322 SFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRR 501
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
L G+AK+ GTV G T +TLYKG IT LW
Sbjct: 502 LDGLAKIVGTVACVGGATIITLYKGPPITKLW 597
>gb|DR079462.1|DR079462 RTFEPL1_11_A03.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_A03_A029 5', mRNA sequence
Length = 843
Score = 154 bits (330), Expect = 7e-037
Identities = 61/152 (40%), Positives = 96/152 (63%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 120 HVAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 299
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++
Sbjct: 300 SFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRR 479
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
L G+AK+ GTV G T +TLYKG IT LW
Sbjct: 480 LDGLAKIVGTVACVGGATIITLYKGPPITKLW 575
>gb|DR091559.1|DR091559 RTAL1_22_A11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_A11_A029 5', mRNA sequence
Length = 845
Score = 154 bits (330), Expect = 7e-037
Identities = 60/153 (39%), Positives = 96/153 (62%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ A ++G+N +V + YR + V++ PFA++ E+ +RPK+
Sbjct: 63 PYVAMISLQFGYAGMTIISKVALDRGMNHFVLVVYRQTVATVVLSPFAFFFERNVRPKLK 242
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LL + N Y+ LK TSPT+ +++N + +MTFV+A++ RME +++K
Sbjct: 243 FSIFCQIFVLGLLEPVMDQNFYYLGLKLTSPTYAVTLMNILPAMTFVMALLFRMESLNIK 422
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
LR AK+ G +V G MTLYKG + W
Sbjct: 423 KLRSQAKIVGMIVCVGGAMLMTLYKGPILQMHW 521
>gb|DR094118.1|DR094118 STRR1_12_C07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C07_A033 5', mRNA sequence
Length = 838
Score = 154 bits (330), Expect = 7e-037
Identities = 61/152 (40%), Positives = 96/152 (63%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 141 HVAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 320
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++
Sbjct: 321 SFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRR 500
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
L G+AK+ GTV G T +TLYKG IT LW
Sbjct: 501 LDGLAKIVGTVACVGGATIITLYKGPPITKLW 596
>gb|BX254061.1|BX254061 BX254061 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092G08, mRNA sequence
Length = 682
Score = 152 bits (326), Expect = 3e-036
Identities = 60/152 (39%), Positives = 95/152 (62%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 164 HAAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 343
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++
Sbjct: 344 SFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRR 523
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
L G+AK+ GTV G T +TLYKG IT LW
Sbjct: 524 LDGLAKIVGTVACVGGATIITLYKGPPITKLW 619
>gb|DR120323.1|DR120323 RTMG1_29_A06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_29_A06_A029 3', mRNA sequence
Length = 866
Score = 151 bits (324), Expect = 5e-036
Identities = 60/139 (43%), Positives = 91/139 (65%)
Frame = +2 / -3
Query: 182 MYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLG 361
M I++ + N+G++ +V + YR + V++ PFA++LE+ +RPK+T +F +IFVL LLG
Sbjct: 849 MNIISKVSLNRGMSHFVLVVYRQAVATVVLAPFAFFLERKMRPKLTFSIFCQIFVLGLLG 670
Query: 362 VSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVS 541
+ N + LK TSPT+ ++ N + MTFVIA++LRME V++K LR AK+ GT+V
Sbjct: 669 PVIDQNFSYLGLKLTSPTYACALSNVLPCMTFVIALLLRMERVNIKKLRSGAKLVGTIVC 490
Query: 542 FAGVTTMTLYKGAAITSLW 598
G MTLYKG + W
Sbjct: 489 VGGAMLMTLYKGPIVRMFW 433
>gb|CX648371.1|CX648371 COLD1_28_F03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_F03_A029 3', mRNA sequence
Length = 766
Score = 149 bits (320), Expect = 2e-035
Identities = 60/147 (40%), Positives = 90/147 (61%)
Frame = +2 / -1
Query: 164 QLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIF 343
Q+ Y I +A N+G + +V + YRH+ + + PFA+++E+ RPKMT F +IF
Sbjct: 766 QVGYAGTNIIVKACLNKGFSHFVLVVYRHVAATIALAPFAFFIERKERPKMTFFTFCQIF 587
Query: 344 VLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKV 523
VL LG L N+Y+ LK TSPT+ ++ N + +MTFV+A+I RME V++K LR AK+
Sbjct: 586 VLGSLGPVLDQNLYYIGLKLTSPTYACALSNLLPAMTFVMALIFRMERVNIKKLRSQAKI 407
Query: 524 AGTVVSFAGVTTMTLYKGAAITSLWKS 604
GT+V G MT+Y G + W +
Sbjct: 406 VGTIVCVGGAMLMTMYNGPIVKMPWSA 326
>gb|CF390060.1|CF390060 RTDR2_12_A06.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_A06_A021 3', mRNA
sequence
Length = 668
Score = 149 bits (319), Expect = 2e-035
Identities = 59/149 (39%), Positives = 94/149 (63%)
Frame = +2 / -2
Query: 152 MVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLF 331
M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 664 MLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTLSFL 485
Query: 332 VEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRG 511
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++ L G
Sbjct: 484 VQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDG 305
Query: 512 VAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+AK+ GTV G T +TLYKG IT LW
Sbjct: 304 LAKIVGTVACVGGATIITLYKGPPITKLW 218
>gb|DT631215.1|DT631215 EST1146146 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF628 3' end, mRNA sequence
Length = 610
Score = 148 bits (317), Expect = 4e-035
Identities = 55/135 (40%), Positives = 90/135 (66%)
Frame = +2 / +1
Query: 134 YAPHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPK 313
+ PH+ ++ Q+CY M +T A G+N ++++ YR + ++++ PFAY+LE+ RP
Sbjct: 205 FKPHIAQLMVQVCYAGMNILTRLALEDGMNHFIFVCYRQAVASLVLSPFAYFLERSERPV 384
Query: 314 MTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVD 493
MT +F EIF L+ +G+++ N+YF L+YTS TF ++ N I +TFV+A RME V+
Sbjct: 385 MTCAVFWEIFTLAFVGITMNQNLYFAGLQYTSSTFASATTNLIPVVTFVLATTFRMEHVN 564
Query: 494 VKSLRGVAKVAGTVV 538
++S+ G AKV GT+V
Sbjct: 565 IRSIYGQAKVVGTLV 609
>gb|BG485786.1|BG485786 NXPV_038_G10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_038_G10 5' similar to Arabidopsis
thaliana sequence At5g07050 MtN21 nodulin protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 585
Score = 140 bits (300), Expect = 1e-032
Identities = 56/144 (38%), Positives = 88/144 (61%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 143 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 322
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L L L N Y+ LK TSPT+ ++ N +MTFVIA++ R E V++K
Sbjct: 323 FSIFCQIFALGLXXPVLDQNFYYLGLKLTSPTYSCALSNVXXAMTFVIALVFRXERVNIK 502
Query: 500 SLRGVAKVAGTVVSFAGVTTMTLY 571
R AK+ GT+V G MT Y
Sbjct: 503 XXRSQAKILGTIVCVXGAMLMTXY 574
>gb|CF478049.1|CF478049 RTWW3_17_E06.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_E06_A022 5', mRNA sequence
Length = 828
Score = 83.5 bits (176), Expect(2) = 6e-032
Identities = 32/68 (47%), Positives = 48/68 (70%)
Frame = +2 / +3
Query: 395 LKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYK 574
L YT+PTF +++ N++ ++TF++A IL +E V ++ L G+AK+ GTV G T +TLYK
Sbjct: 414 LYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRRLDGLAKIVGTVACVGGATIITLYK 593
Query: 575 GAAITSLW 598
G IT LW
Sbjct: 594 GPPITKLW 617
Score = 73.9 bits (155), Expect(2) = 6e-032
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
HV M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 161 HVAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 340
Query: 323 MLFVEIFVLSLLGVSLTLNMY 385
V+ F+L+L G++ Y
Sbjct: 341 SFLVQFFLLALCGITANQGFY 403
>gb|BG485740.1|BG485740 NXPV_038_C08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_038_C08 5' similar to Arabidopsis
thaliana sequence At5g07050 MtN21 nodulin protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 417
Score = 136 bits (292), Expect = 1e-031
Identities = 54/136 (39%), Positives = 85/136 (62%)
Frame = +2 / +2
Query: 164 QLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLFVEIF 343
Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T +F +IF
Sbjct: 8 QFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKITFSIFCQIF 187
Query: 344 VLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKV 523
L L L N Y+ LK TSPT+ ++ N + +MTFVIA++ ME V++K R AK+
Sbjct: 188 ALGLXXPVLXXNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFXMERVNIKXXRSQAKI 367
Query: 524 AGTVVSFAGVTTMTLY 571
GT+V G MTLY
Sbjct: 368 LGTIVCXXGAMLMTLY 415
>gb|CO369832.1|CO369832 RTK1_54_A12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_54_A12_A029 5', mRNA sequence
Length = 520
Score = 136 bits (292), Expect = 1e-031
Identities = 53/123 (43%), Positives = 85/123 (69%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 146 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 325
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IFVL LLG + N Y+ LK TSPT+ +++ N + +MTFV+A+I RME V++K
Sbjct: 326 FPIFWQIFVLGLLGPVIDQNFYYMGLKLTSPTYASALSNLLPAMTFVMALIFRMERVNIK 505
Query: 500 SLR 508
++R
Sbjct: 506 NIR 514
>gb|DR384820.1|DR384820 RTHG1_4_F11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_F11_A029 5', mRNA sequence
Length = 690
Score = 134 bits (287), Expect = 6e-031
Identities = 53/112 (47%), Positives = 78/112 (69%)
Frame = +2 / +3
Query: 263 VLIWPFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTI 442
V++ PFA+++E+ +RPK+T +F +IFVL LLG + N Y+ LK TSPT+ ++ N +
Sbjct: 15 VVLAPFAFFIERKVRPKLTFPIFWQIFVLGLLGPVIDQNFYYLGLKLTSPTYACALSNVL 194
Query: 443 ASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
+MTFV+A+I RME V++K+LR AK+ GT+V G MTLYKG + LW
Sbjct: 195 PAMTFVMALIFRMERVNIKNLRSQAKIVGTIVCVGGAMLMTLYKGPIVPMLW 350
>gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, complete cds
Length = 1651
Score = 76.7 bits (161), Expect(2) = 3e-029
Identities = 28/72 (38%), Positives = 48/72 (66%)
Frame = +2 / +3
Query: 410 PTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAIT 589
PTF +++ N++ ++TF++A LR+E V + G+AK+ GTV +G T +TLYKG IT
Sbjct: 531 PTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPIT 710
Query: 590 SLWKSPVQIAGS 625
+W+ +++ S
Sbjct: 711 HIWRPNLEVTAS 746
Score = 71.6 bits (150), Expect(2) = 3e-029
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H M+ Q Y + ++ AA N G++ V+ YR++L +LI P AY+LEK RP +TL
Sbjct: 264 HAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKERPALTL 443
Query: 323 MLFVEIFVLSLLGVS 367
++ F+L+L G++
Sbjct: 444 SFLIQFFLLALCGIT 488
>gb|DR078570.1|DR078570 RTFEPL1_5_C05.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C05_A029 5', mRNA sequence
Length = 788
Score = 127 bits (273), Expect = 5e-029
Identities = 50/108 (46%), Positives = 72/108 (66%)
Frame = +2 / +3
Query: 275 PFAYYLEKGLRPKMTLMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMT 454
PFA+++E+ +RPK+T +F +IF L LLG L N Y+ LK TSPT+ ++ N + +MT
Sbjct: 12 PFAFFVERKVRPKITFSIFCQIFALGLLGPVLDQNFYYLGLKLTSPTYSCALSNVLPAMT 191
Query: 455 FVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVTTMTLYKGAAITSLW 598
FVIA++ RME V++K +R AK+ GT+V G MTLYKG + W
Sbjct: 192 FVIALVFRMERVNIKQVRSQAKILGTIVCVGGAMLMTLYKGPLVQMFW 335
>gb|BX254250.1|BX254250 BX254250 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP095F03, mRNA sequence
Length = 577
Score = 127 bits (272), Expect = 7e-029
Identities = 50/136 (36%), Positives = 84/136 (61%)
Frame = +2 / +1
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H M+ Q Y + ++ AA N G++ V+ YR+++ +L+ P AY+LEK RP +TL
Sbjct: 166 HAAMLALQFGYAGFHIVSRAALNMGISKIVFPIYRNIIALLLLGPAAYFLEKKERPPLTL 345
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
V+ F+L+L G++ Y L YT+PTF +++ N++ ++TF++A IL +E V ++
Sbjct: 346 SFLVQFFLLALCGITANQGFYLLGLYYTTPTFASAIQNSVPAITFIMAAILGLEEVHIRR 525
Query: 503 LRGVAKVAGTVVSFAG 550
L G+AK+ GTV G
Sbjct: 526 LDGLAKIVGTVACVGG 573
>gb|DR112232.1|DR112232 RTS1_26_F04.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_F04_A029 5', mRNA sequence
Length = 488
Score = 84.9 bits (179), Expect(2) = 2e-028
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M IT+ + N+G+N +V + YRH V++ PFA+++E+ +RPK+T
Sbjct: 107 PYVAMISLQFGYAGMNIITKVSLNRGMNHFVLVVYRHAAATVVLAPFAFFIERKVRPKLT 286
Query: 320 LMLFVEIFVLSLLGV 364
+F +IFVL LLG+
Sbjct: 287 FPIFWQIFVLGLLGL 331
Score = 61.1 bits (127), Expect(2) = 2e-028
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +2 / +1
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAK 520
N Y+ LK TSPT+ ++ N + +MTFV+A+I RME V++K+LR AK
Sbjct: 343 NFYYLGLKLTSPTYACALSNVLPAMTFVMALIFRMERVNIKNLRSQAK 486
>gb|CV033929.1|CV033929 RTNACL1_37_B03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_37_B03_A029 5', mRNA sequence
Length = 661
Score = 86.8 bits (183), Expect(2) = 6e-028
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = +2 / +3
Query: 359 GVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVV 538
G+++T N Y L YTS TF + N + +TFVIA + R E V+++SLRG AKV GTV+
Sbjct: 225 GIAITHNCYIPGLHYTSSTFTAAAFNLVPVLTFVIATLRRQEKVNLRSLRGQAKVVGTVI 404
Query: 539 SFAGVTTMTLYKG 577
S G MTLY+G
Sbjct: 405 SVTGAMVMTLYRG 443
Score = 57.4 bits (119), Expect(2) = 6e-028
Identities = 19/70 (27%), Positives = 39/70 (55%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P++ ++ + +Y + A G+N +V++TYR + + I P AY+ ++ RP +T
Sbjct: 9 PYLSQIIVHIASAGVYIMVRIALRDGMNHFVFVTYRQIFATITIAPLAYFSKRRQRPPLT 188
Query: 320 LMLFVEIFVL 349
+ +IF+L
Sbjct: 189 RPVLFQIFLL 218
>gb|DR078785.1|DR078785 RTFEPL1_6_G09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_G09_A029 5', mRNA sequence
Length = 764
Score = 88.1 bits (186), Expect(2) = 7e-027
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +2 / +1
Query: 377 NMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRGVAKVAGTVVSFAGVT 556
N Y+ LK TSP F +++N + +MTFV+A++ RME +++K LR AK+ GT+V G
Sbjct: 382 NFYYLGLKLTSPIFAVTLINVLPAMTFVMALLFRMESLNIKKLRSQAKIVGTIVCVGGAM 561
Query: 557 TMTLYKGAAITSLW 598
MTLYKG + W
Sbjct: 562 LMTLYKGPILQMHW 603
Score = 54.2 bits (112), Expect(2) = 7e-027
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +2 / +3
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEK 298
P+V M+ Q Y M I++ A N+G+N +V + YR + V++ PFA++ E+
Sbjct: 48 PYVAMIFLQFGYAGMVIISKVALNRGMNHFVLVVYRQTVATVVLAPFAFFFER 206
>gb|BQ695720.1|BQ695720 NXPV_031_H12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_H12 5' similar to Arabidopsis
thaliana sequence At5g07050 MtN21 nodulin protein-like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 531
Score = 119 bits (254), Expect = 2e-026
Identities = 46/120 (38%), Positives = 77/120 (64%)
Frame = +2 / +2
Query: 140 PHVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMT 319
P+V M+ Q Y M I++ + + G+N +V + YRH + +++ PFA+++E+ +RPK+T
Sbjct: 146 PYVAMISLQFGYAGMNIISKVSLSGGMNHFVLVVYRHAVATIVLAPFAFFVERKVRPKIT 325
Query: 320 LMLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVK 499
+F +IF L L L N Y+ LK TSPT+ ++ N + +MTFVIA++ ME V++K
Sbjct: 326 FSIFCQIFALGLXXPVLDXNFYYLGLKLTSPTYSCALSNVLPAMTFVIALVFXMERVNIK 505
>gb|BX250922.1|BX250922 BX250922 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042H11, mRNA sequence
Length = 671
Score = 114 bits (243), Expect = 7e-025
Identities = 51/148 (34%), Positives = 79/148 (53%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ YR LL L+ P AY+ EK +RP +T
Sbjct: 134 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVYRDLLALSLLGPIAYFKEKRIRPPITR 313
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 314 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 493
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 494 IDGKVKVGGTLLCIFGALFMAIFRGPAV 577
>gb|BX784100.1|BX784100 BX784100 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129B03, mRNA sequence
Length = 676
Score = 114 bits (243), Expect = 7e-025
Identities = 51/148 (34%), Positives = 79/148 (53%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ YR LL L+ P AY+ EK +RP +T
Sbjct: 135 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVYRDLLALSLLGPIAYFKEKRIRPPITR 314
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 315 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 494
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 495 IDGKVKVGGTLLCIFGALFMAIFRGPAV 578
>gb|CF387362.1|CF387362 RTDR1_12_G11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_12_G11_A015 5', mRNA
sequence
Length = 750
Score = 112 bits (239), Expect = 3e-024
Identities = 50/148 (33%), Positives = 79/148 (53%)
Frame = +2 / +1
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ +R LL L+ P AY+ EK +RP +T
Sbjct: 55 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVFRDLLALSLLGPIAYFKEKRIRPPITR 234
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 235 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 414
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 415 IDGKVKVGGTLLCIFGALFMAIFRGPAV 498
>gb|CF471103.1|CF471103 RTDS1_16_C03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_16_C03_A015 5', mRNA sequence
Length = 822
Score = 112 bits (239), Expect = 3e-024
Identities = 50/148 (33%), Positives = 79/148 (53%)
Frame = +2 / +2
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ +R LL L+ P AY+ EK +RP +T
Sbjct: 128 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVFRDLLALSLLGPIAYFKEKRIRPPITR 307
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 308 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 487
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 488 IDGKVKVGGTLLCIFGALFMAIFRGPAV 571
>gb|CV031904.1|CV031904 RTNACL1_4_B04.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_4_B04_A029 5', mRNA sequence
Length = 825
Score = 112 bits (239), Expect = 3e-024
Identities = 50/148 (33%), Positives = 79/148 (53%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ +R LL L+ P AY+ EK +RP +T
Sbjct: 132 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVFRDLLALSLLGPIAYFKEKRIRPPITR 311
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 312 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 491
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 492 IDGKVKVGGTLLCIFGALFMAIFRGPAV 575
>gb|DT625230.1|DT625230 EST1159505 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAN30 5' end, mRNA sequence
Length = 795
Score = 112 bits (239), Expect = 3e-024
Identities = 50/148 (33%), Positives = 79/148 (53%)
Frame = +2 / +3
Query: 143 HVQMVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTL 322
H + L QL Y + IT+ A G+N V+ +R LL L+ P AY+ EK +RP +T
Sbjct: 54 HAALALVQLNYGGYHVITKLALTVGMNQVVFCVFRDLLALSLLGPIAYFKEKRIRPPITR 233
Query: 323 MLFVEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKS 502
L F L L G+ ++ L YTSPT+ ++ I TF++A I+ E V++ +
Sbjct: 234 RLLQSFFFLGLTGIFGNQLLFIMGLDYTSPTYAAAIQPAIPVFTFMLAAIMGTESVNLNT 413
Query: 503 LRGVAKVAGTVVSFAGVTTMTLYKGAAI 586
+ G KV GT++ G M +++G A+
Sbjct: 414 IDGKVKVGGTLLCIFGALFMAIFRGPAV 497
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 224,418,476
Number of Sequences: 355925
Number of extensions: 2249173
Number of successful extensions: 22659
Number of sequences better than 1.0e-020: 59
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8683771200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)