TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered lo... 223 2e-079
gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response R... 217 4e-076
gb|DR099170.1|DR099170 STRR1_53_D05.g1_A033 Stem Response R... 217 4e-076
gb|DR024240.1|DR024240 STRS1_63_B11.g1_A034 Shoot tip pitch... 211 7e-074
gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control P... 188 8e-069
dbj|BD224350.1| Materials and methods for the modification ... 171 6e-064
dbj|BD224413.1| Materials and methods for the modification ... 171 6e-064
gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo li... 174 2e-063
gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch... 167 6e-061
gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo li... 213 9e-057
gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch... 219 2e-056
gb|CF666460.1|CF666460 RTCNT1_23_A10.g1_A029 Root control P... 219 3e-056
gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo li... 197 2e-054
gb|BE762088.1|BE762088 NXCI_076_H01_F NXCI (Nsf Xylem Compr... 198 6e-050
gb|BX680507.1|BX680507 BX680507 RS Pinus pinaster cDNA clon... 197 1e-049
gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinu... 196 3e-049
gb|DR169308.1|DR169308 RTPHOS1_31_B02.g1_A029 Roots minus p... 171 7e-049
gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potas... 119 2e-048
gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus cal... 114 7e-047
gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pin... 95 2e-041
gb|BF516660.1|BF516660 NXSI_001_G06_F NXSI (Nsf Xylem Side ... 167 1e-040
gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control P... 94 1e-038
gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response R... 88 6e-035
gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus cal... 88 1e-030
gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus p... 94 3e-030
gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch... 125 6e-028
>gb|CF475218.1|CF475218 RTWW2_14_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_14_H06_A021 5', mRNA sequence
Length = 777
Score = 223 bits (485), Expect(2) = 2e-079
Identities = 95/130 (73%), Positives = 110/130 (84%)
Frame = +2 / +3
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
MSRI+DAV RILRVKFTMGLFE+P + SL +LG + HRELAREAVRKSLVLLKNGKS+
Sbjct: 15 MSRINDAVRRILRVKFTMGLFEHPMANPSLVNQLGNKVHRELAREAVRKSLVLLKNGKSA 194
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
PLLPL K A KILVAG+HA++LG QCGGWTITWQG SGN+T GTTIL I++TV PST
Sbjct: 195 SKPLLPLNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPST 374
Query: 365 QVVYSESPDS 394
+VVY E+PD+
Sbjct: 375 EVVYQENPDA 404
Score = 127 bits (274), Expect(2) = 2e-042
Identities = 69/129 (53%), Positives = 74/129 (57%)
Frame = -3 / -3
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG S TT V G TV I RI PC VIVHPPH PR AW+PATRI AF
Sbjct: 400 SGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAF 221
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
+GS G D PFF TRDFLTAS A+S C+ PS RL G S PMVN T +IL
Sbjct: 220 LFKGSKGLLADFPFFNSTRDFLTASLANSLCTLLPSWLTRLGLAMGCSKSPMVNFTLKIL 41
Query: 30 *TASSILLM 4
TAS IL M
Sbjct: 40 RTASFILDM 14
Score = 94.1 bits (200), Expect(2) = 2e-079
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / +3
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 426 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 590
Score = 64.0 bits (134), Expect(2) = 2e-042
Identities = 28/52 (53%), Positives = 33/52 (63%)
Frame = -3 / -3
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H PHT P GIV+ RLSPNVSA G SPT T+A
Sbjct: 589 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMA 434
>gb|DR099434.1|DR099434 STRR1_55_C05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_C05_A033 5', mRNA sequence
Length = 719
Score = 217 bits (470), Expect(2) = 4e-076
Identities = 90/136 (66%), Positives = 108/136 (79%)
Frame = +2 / +1
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
M+RI+DAV RILRVKFTMGLFE P D +LAG LG +EHR LAREAVRKSLVLLKNGKS+
Sbjct: 37 MNRINDAVRRILRVKFTMGLFEQPLADPNLAGHLGSKEHRNLAREAVRKSLVLLKNGKST 216
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
P LPL K KILVAG+H ++LG QCGGWT+ WQGSSGN+T GTTIL I+ V PST
Sbjct: 217 SEPFLPLDKNVSKILVAGTHPDNLGYQCGGWTMQWQGSSGNSTIGTTILEAIKLAVSPST 396
Query: 365 QVVYSESPDSGVLADK 412
+VVY ++PD+ + ++
Sbjct: 397 EVVYQQNPDANYVKEQ 444
Score = 132 bits (285), Expect(2) = 5e-044
Identities = 66/129 (51%), Positives = 71/129 (55%)
Frame = -3 / -1
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T I RI PCH IVHPPHW PR W+PATRIL F
Sbjct: 422 SGFC**TTSVEGLTANLIASRIVVPMVEFPLDPCHCIVHPPHW*PRLSGWVPATRILETF 243
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
+G G+ D PFF TRDFLTAS A CS P PAR S G S P+VN T +IL
Sbjct: 242 LSKGRKGSLVDFPFFNSTRDFLTASLAKFLCSLLPRWPARFGSARGCSKSPIVNFTLKIL 63
Query: 30 *TASSILLM 4
TAS IL M
Sbjct: 62 RTASFILFM 36
Score = 89.9 bits (191), Expect(2) = 4e-076
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ Y IVVVGE PYAE FGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 448 FSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLVILISGRPLVIE 612
Score = 64.0 bits (134), Expect(2) = 5e-044
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = -3 / -1
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTI 424
S TS LP+++ T H PHT P GIV+ RLSPN+SA G SPTTTI
Sbjct: 611 SITSGLPDIKITRHFNDPHTFLIVSPPPMGIVKLRLSPNISA*GASPTTTI 459
>gb|DR099170.1|DR099170 STRR1_53_D05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_53_D05_A033 5', mRNA sequence
Length = 693
Score = 217 bits (470), Expect(2) = 4e-076
Identities = 90/136 (66%), Positives = 108/136 (79%)
Frame = +2 / +2
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
M+RI+DAV RILRVKFTMGLFE P D +LAG LG +EHR LAREAVRKSLVLLKNGKS+
Sbjct: 41 MNRINDAVRRILRVKFTMGLFEQPLADPNLAGHLGSKEHRNLAREAVRKSLVLLKNGKST 220
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
P LPL K KILVAG+H ++LG QCGGWT+ WQGSSGN+T GTTIL I+ V PST
Sbjct: 221 SEPFLPLDKNVSKILVAGTHPDNLGYQCGGWTMQWQGSSGNSTIGTTILEAIKLAVSPST 400
Query: 365 QVVYSESPDSGVLADK 412
+VVY ++PD+ + ++
Sbjct: 401 EVVYQQNPDANYVKEQ 448
Score = 132 bits (285), Expect(2) = 5e-044
Identities = 66/129 (51%), Positives = 71/129 (55%)
Frame = -3 / -1
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T I RI PCH IVHPPHW PR W+PATRIL F
Sbjct: 426 SGFC**TTSVEGLTANLIASRIVVPMVEFPLDPCHCIVHPPHW*PRLSGWVPATRILETF 247
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
+G G+ D PFF TRDFLTAS A CS P PAR S G S P+VN T +IL
Sbjct: 246 LSKGRKGSLVDFPFFNSTRDFLTASLAKFLCSLLPRWPARFGSARGCSKSPIVNFTLKIL 67
Query: 30 *TASSILLM 4
TAS IL M
Sbjct: 66 RTASFILFM 40
Score = 89.9 bits (191), Expect(2) = 4e-076
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +2 / +2
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ Y IVVVGE PYAE FGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 452 FSYGIVVVGEAPYAEMFGDNLNLTIPMGGGDTIKNVCGSLKCLVILISGRPLVIE 616
Score = 64.0 bits (134), Expect(2) = 5e-044
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = -3 / -1
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTI 424
S TS LP+++ T H PHT P GIV+ RLSPN+SA G SPTTTI
Sbjct: 615 SITSGLPDIKITRHFNDPHTFLIVSPPPMGIVKLRLSPNISA*GASPTTTI 463
>gb|DR024240.1|DR024240 STRS1_63_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_B11_A034 5', mRNA sequence
Length = 864
Score = 211 bits (457), Expect(2) = 7e-074
Identities = 91/136 (66%), Positives = 106/136 (77%)
Frame = +2 / +2
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
MSRI+DAV RILRVKF MGLFE P + SLA +LG +EHRELAREAVRKSLVLLKNGKS+
Sbjct: 236 MSRINDAVRRILRVKFAMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKST 415
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
PLLPL K A KILV G+HA++LG QCGGWTI WQG SGN+T GTT L I+ V ST
Sbjct: 416 NNPLLPLNKNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIKLAVSSST 595
Query: 365 QVVYSESPDSGVLADK 412
+VVY ++PD+ + K
Sbjct: 596 KVVYKKNPDADYVKGK 643
Score = 114 bits (245), Expect(2) = 1e-033
Identities = 56/96 (58%), Positives = 61/96 (63%)
Frame = -3 / -1
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A +P TRIL AF +GS G D PFF TRDFLTAS A+S CS
Sbjct: 522 CHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFVDFPFFNNTRDFLTASLANSLCSL 343
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLM 4
PS ARL G S P+ N T +IL TAS ILLM
Sbjct: 342 LPSWLARLGLARGCSKSPIANFTLKILRTASFILLM 235
Score = 88.1 bits (187), Expect(2) = 7e-074
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +2 / +2
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVV+GE PYAE +GDNLNLTIP G ++VCG KC+V+LISGR LV++
Sbjct: 647 FSYAIVVIGEAPYAEYYGDNLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIK 811
Score = 49.8 bits (103), Expect(2) = 1e-033
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = -3 / -1
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
TS LP+++ T H P T P G+V+ RLSP SA G SP TTIA
Sbjct: 804 TSGLPDIKITRHFKDPQTFLIVSPPLKGMVKLRLSP*YSA*GASPITTIA 655
>gb|CF671079.1|CF671079 RTCNT1_54_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 5', mRNA sequence
Length = 713
Score = 188 bits (407), Expect(2) = 8e-069
Identities = 79/113 (69%), Positives = 93/113 (82%)
Frame = +2 / +2
Query: 56 MGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVA 235
MGLF +P + SL +LG + HRELAREAVRKSLVLLKNGKS+ PLLPL K A KILVA
Sbjct: 2 MGLF*HPMANPSLVNQLGSKVHRELAREAVRKSLVLLKNGKSASKPLLPLNKNAAKILVA 181
Query: 236 GSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
G+HA++LG QCGGWTITWQG SGN+T GTTIL I++TV PST+VVY E+PD+
Sbjct: 182 GTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDA 340
Score = 106 bits (227), Expect(2) = 5e-036
Identities = 57/112 (50%), Positives = 61/112 (54%)
Frame = -3 / -3
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG S TT V G TV I RI PC VIVHPPH PR AW+PATRI AF
Sbjct: 336 SGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAF 157
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPM 55
+GS G D PFF TRDFLTAS A+S C+ PS RL G PM
Sbjct: 156 LFKGSKGLLADFPFFNSTRDFLTASLANSLCTLLPSWLTRLGLAMGC*KSPM 1
Score = 94.1 bits (200), Expect(2) = 8e-069
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / +2
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 362 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 526
Score = 64.0 bits (134), Expect(2) = 5e-036
Identities = 28/52 (53%), Positives = 33/52 (63%)
Frame = -3 / -3
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H PHT P GIV+ RLSPNVSA G SPT T+A
Sbjct: 525 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMA 370
>dbj|BD224350.1| Materials and methods for the modification of plant lignin content
Length = 545
Score = 171 bits (370), Expect(2) = 6e-064
Identities = 70/102 (68%), Positives = 83/102 (81%)
Frame = +2 / +3
Query: 89 SLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQC 268
SLA +LG +EHRELAREAVRKSLVLLKNGKS+ PLLPL K A K+LVAG+H ++LG QC
Sbjct: 27 SLANQLGSKEHRELAREAVRKSLVLLKNGKSANKPLLPLEKNASKVLVAGTHPDNLGYQC 206
Query: 269 GGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
GGWT+ WQG SGN T GTTIL I+ V PST+VVY ++PD+
Sbjct: 207 GGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDA 332
Score = 109 bits (234), Expect(2) = 2e-037
Identities = 53/101 (52%), Positives = 58/101 (57%)
Frame = -3 / -2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T + I RI PCH IVHPPH PR W+PATR L AF
Sbjct: 328 SGFCS*TTSVEGLTASLIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAF 149
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARL 88
F +GS G D PFF T+DFLTAS A+S CS PS ARL
Sbjct: 148 FSKGSKGLLADFPFFNNTKDFLTASLANSLCSLLPSWLARL 26
Score = 94.5 bits (201), Expect(2) = 6e-064
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = +2 / +3
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVVVGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 354 FSYAIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 518
Score = 65.3 bits (137), Expect(2) = 2e-037
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -3 / -2
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H P T P G+V+ RLSPNVSAYG SPTTT+A
Sbjct: 517 SITSGLPDIKITRHFKEPQTVLIVSPPPRGMVKLRLSPNVSAYGASPTTTMA 362
>dbj|BD224413.1| Materials and methods for the modification of plant lignin content
Length = 528
Score = 171 bits (370), Expect(2) = 6e-064
Identities = 70/102 (68%), Positives = 83/102 (81%)
Frame = +2 / +1
Query: 89 SLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQC 268
SLA +LG +EHRELAREAVRKSLVLLKNGKS+ PLLPL K A K+LVAG+H ++LG QC
Sbjct: 10 SLANQLGSKEHRELAREAVRKSLVLLKNGKSANKPLLPLEKNASKVLVAGTHPDNLGYQC 189
Query: 269 GGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
GGWT+ WQG SGN T GTTIL I+ V PST+VVY ++PD+
Sbjct: 190 GGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDA 315
Score = 109 bits (234), Expect(2) = 2e-037
Identities = 53/101 (52%), Positives = 58/101 (57%)
Frame = -3 / -2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T + I RI PCH IVHPPH PR W+PATR L AF
Sbjct: 311 SGFCS*TTSVEGLTASLIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAF 132
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARL 88
F +GS G D PFF T+DFLTAS A+S CS PS ARL
Sbjct: 131 FSKGSKGLLADFPFFNNTKDFLTASLANSLCSLLPSWLARL 9
Score = 94.5 bits (201), Expect(2) = 6e-064
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVVVGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 337 FSYAIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 501
Score = 65.3 bits (137), Expect(2) = 2e-037
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = -3 / -2
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H P T P G+V+ RLSPNVSAYG SPTTT+A
Sbjct: 500 SITSGLPDIKITRHFKEPQTVLIVSPPPRGMVKLRLSPNVSAYGASPTTTMA 345
>gb|DR682125.1|DR682125 EST1072200 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA729, mRNA sequence
Length = 896
Score = 174 bits (376), Expect(3) = 2e-063
Identities = 73/104 (70%), Positives = 85/104 (81%)
Frame = +2 / -1
Query: 83 DSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGN 262
D SLA +LG +EHRELAREAVRKSLVLLKNGKS+ PLLPL K A KILVAG+H ++LG
Sbjct: 854 DPSLANQLGSKEHRELAREAVRKSLVLLKNGKSASKPLLPLDKNAPKILVAGTHPDNLGY 675
Query: 263 QCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
QCGGWTI WQG SGN+T GTTIL I+ +V PST VVY ++PD+
Sbjct: 674 QCGGWTIEWQGLSGNSTIGTTILEAIKFSVSPSTDVVYQQNPDA 543
Score = 100 bits (215), Expect(2) = 4e-031
Identities = 55/103 (53%), Positives = 57/103 (55%)
Frame = -3 / +1
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T I RI PCH IVHPPH PR +PATRIL AF
Sbjct: 547 SGFC**TTSVEGLTENLIASRIVVPMVEFPLNPCHSIVHPPH**PRLSG*VPATRILGAF 726
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLES 82
RGS G D PFF TRDFLTAS A+S CS PS ARL S
Sbjct: 727 LSRGSKGLLADFPFFNNTRDFLTASLANSLCSLLPSWLARLGS 855
Score = 86.3 bits (183), Expect(3) = 2e-063
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = +2 / -1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVVVGE PYAE GDN NLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 521 FSYAIVVVGEAPYAEMKGDNFNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIE 357
Score = 53.0 bits (110), Expect(2) = 4e-031
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = -3 / +1
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S T LP++ T H P T P GIV+ +LSP +SA G SPTTTIA
Sbjct: 358 SITRGLPDINITRHFKEPQTFLIVSPPLKGIVKLKLSPFISA*GASPTTTIA 513
Score = 22.5 bits (43), Expect(3) = 2e-063
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +2 / -2
Query: 47 KFTMGLFEN 73
KFTMGLFE+
Sbjct: 889 KFTMGLFEH 863
>gb|DR024206.1|DR024206 STRS1_63_B11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_63_B11_A034 3', mRNA sequence
Length = 869
Score = 167 bits (362), Expect(2) = 6e-061
Identities = 71/108 (65%), Positives = 84/108 (77%)
Frame = +2 / +2
Query: 89 SLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQC 268
SLA +LG +EHRELAREAVRKSLVLLKNGKS+ PLLPL K A KILV G+HA++LG QC
Sbjct: 8 SLANQLGSKEHRELAREAVRKSLVLLKNGKSTNNPLLPLNKNASKILVVGTHADNLGYQC 187
Query: 269 GGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDSGVLADK 412
GGWTI WQG SGN+T GTT L I+ V ST+VVY ++PD+ + K
Sbjct: 188 GGWTIEWQGLSGNSTIGTTFLEAIKLAVSSSTKVVYKKNPDADYVKGK 331
Score = 91.8 bits (195), Expect(2) = 7e-027
Identities = 42/68 (61%), Positives = 45/68 (66%)
Frame = -3 / -3
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A +P TRIL AF +GS G D PFF TRDFLTAS A+S CS
Sbjct: 210 CHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFVDFPFFNNTRDFLTASLANSLCSL 31
Query: 111 FPSSPARL 88
PS ARL
Sbjct: 30 LPSWLARL 7
Score = 88.1 bits (187), Expect(2) = 6e-061
Identities = 34/55 (61%), Positives = 43/55 (78%)
Frame = +2 / +2
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVV+GE PYAE +GDNLNLTIP G ++VCG KC+V+LISGR LV++
Sbjct: 335 FSYAIVVIGEAPYAEYYGDNLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIK 499
Score = 49.8 bits (103), Expect(2) = 7e-027
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = -3 / -3
Query: 570 TSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
TS LP+++ T H P T P G+V+ RLSP SA G SP TTIA
Sbjct: 492 TSGLPDIKITRHFKDPQTFLIVSPPLKGMVKLRLSP*YSA*GASPITTIA 343
>gb|DR694469.1|DR694469 EST1084561 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC87 3' end, mRNA sequence
Length = 838
Score = 213 bits (461), Expect(2) = 9e-057
Identities = 93/136 (68%), Positives = 104/136 (76%)
Frame = +2 / +1
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
MSRIDDAV RILRVKF GLFE+P D SL G +G HRELAREAVRKSLVLLKNGK
Sbjct: 388 MSRIDDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVLLKNGKMP 567
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
PLLPL KKA KILVAGSHA++LG QCGGWTI+W+G SG TT GTTIL I+ V PST
Sbjct: 568 GKPLLPLDKKAPKILVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPST 747
Query: 365 QVVYSESPDSGVLADK 412
+VVY ++PD+ K
Sbjct: 748 EVVYEQNPDANFTKGK 795
Score = 127 bits (273), Expect = 5e-029
Identities = 65/129 (50%), Positives = 74/129 (57%)
Frame = -3 / -3
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG YTT V G T + R+ P +IVHPPHW PR A LPAT I AF
Sbjct: 773 SGFCSYTTSVDGLTACFMASRMVVPTVVAPLPPSQLIVHPPHWYPRLSA*LPATSIFGAF 594
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
RG+NG PFF+RTRD TAS ASS C+ P+ P + S G SN+P NLT RIL
Sbjct: 593 LSRGNNGFPGIFPFFKRTRDLRTASLASSLCARLPTMPNKERSVFGCSNKPATNLTLRIL 414
Query: 30 *TASSILLM 4
TASSI LM
Sbjct: 413 RTASSIRLM 387
Score = 28.9 bits (57), Expect(2) = 9e-057
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPY 451
+ YAI V+GEPPY
Sbjct: 799 FSYAIAVIGEPPY 837
>gb|DR018410.1|DR018410 STRS1_22_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 5', mRNA sequence
Length = 747
Score = 219 bits (476), Expect = 2e-056
Identities = 99/152 (65%), Positives = 110/152 (72%)
Frame = +2 / +3
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
P+SRI+DAV RILRVKFTMGLFE P + SLA +LG +EHRELAREAVRKSLVLLKNGKS
Sbjct: 264 PISRINDAVRRILRVKFTMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKS 443
Query: 182 SYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPS 361
PLLPL K A KILV G+HA++LG QCGGWTI WQG SGN+T GTT L I+ V S
Sbjct: 444 MNNPLLPLNKNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIKLAVSSS 623
Query: 362 TQVVYSESPDSGVLADKYDYAIVVVGEPPYAE 457
V V + YAIVVVGE PYAE
Sbjct: 624 KVVYKKNPDVDYVKGKGFSYAIVVVGEAPYAE 719
Score = 118 bits (254), Expect(2) = 6e-027
Identities = 58/97 (59%), Positives = 63/97 (64%)
Frame = -3 / -3
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A +P TRIL AF +GS G D PFF TRDFLTAS A+S CS
Sbjct: 553 CHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFIDFPFFNNTRDFLTASLANSLCSL 374
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLMG 1
PS ARL G S P+VN T +IL TAS ILLMG
Sbjct: 373 LPSWLARLGLARGCSKSPIVNFTLKILRTASFILLMG 263
Score = 22.9 bits (44), Expect(2) = 6e-027
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3 / -3
Query: 456 SAYGGSPTTTIA 421
SA G SPTTTIA
Sbjct: 718 SA*GASPTTTIA 683
>gb|CF666460.1|CF666460 RTCNT1_23_A10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_23_A10_A029 5', mRNA sequence
Length = 780
Score = 219 bits (475), Expect = 3e-056
Identities = 91/131 (69%), Positives = 108/131 (82%)
Frame = +2 / +1
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
PM+RI+DAV RILRVKFTMGLFE+P + SLA +LG +EHRELAREAVRKSLVLLKNGKS
Sbjct: 382 PMTRINDAVRRILRVKFTMGLFEHPLSNPSLANQLGSKEHRELAREAVRKSLVLLKNGKS 561
Query: 182 SYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPS 361
+ PLLPL K A K+LVAG+H ++LG QCGGWT+ WQG SGN T GTTIL I+ V PS
Sbjct: 562 ANKPLLPLEKNASKVLVAGTHPDNLGYQCGGWTMEWQGLSGNITVGTTILEAIKLAVSPS 741
Query: 362 TQVVYSESPDS 394
T+VVY ++PD+
Sbjct: 742 TEVVYEQNPDA 774
Score = 137 bits (295), Expect = 4e-032
Identities = 70/130 (53%), Positives = 76/130 (58%)
Frame = -3 / -2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V G T + I RI PCH IVHPPH PR W+PATR L AF
Sbjct: 770 SGFCS*TTSVEGLTASLIASRIVVPTVMFPLNPCHSIVHPPH**PRLSGWVPATRTLEAF 591
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
F +GS G D PFF T+DFLTAS A+S CS PS ARL G SN PMVN T IL
Sbjct: 590 FSKGSKGLLADFPFFNNTKDFLTASLANSLCSLLPSWLARLGLLRGCSNSPMVNFTLNIL 411
Query: 30 *TASSILLMG 1
TAS IL+MG
Sbjct: 410 LTASFILVMG 381
>gb|DT638708.1|DT638708 EST1153639 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI44 3' end, mRNA sequence
Length = 865
Score = 197 bits (427), Expect(2) = 2e-054
Identities = 87/121 (71%), Positives = 95/121 (78%)
Frame = +2 / +3
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
MSRIDDAV RILRVKF GLFE+P D SL G +G HRELAREAVRKSLVLLKNGK
Sbjct: 396 MSRIDDAVRRILRVKFVAGLFEHPKTDRSLLGMVGNLAHRELAREAVRKSLVLLKNGKMP 575
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPST 364
PLLPL KKA KILVAGSHA++LG QCGGWTI+W+G SG TT GTTIL I+ V PST
Sbjct: 576 GKPLLPLDKKAPKILVAGSHADNLGYQCGGWTISWEGGSGATTVGTTILDAIKQAVSPST 755
Query: 365 Q 367
+
Sbjct: 756 R 758
Score = 116 bits (249), Expect = 1e-025
Identities = 55/94 (58%), Positives = 62/94 (65%)
Frame = -3 / -1
Query: 285 VIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFP 106
+IVHPPHW PR A LPAT I AF RG+NG PFF+RTRD TAS ASS C+ P
Sbjct: 676 LIVHPPHWYPRLSA*LPATSIFGAFLSRGNNGFPGIFPFFKRTRDLRTASLASSLCARLP 497
Query: 105 SSPARLESG*GFSNRPMVNLTRRIL*TASSILLM 4
+ P + S G SN+P NLT RIL TASSI LM
Sbjct: 496 TMPNKERSVFGCSNKPATNLTLRILRTASSIRLM 395
Score = 36.1 bits (73), Expect(2) = 2e-054
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGD 469
+ YAI V+GEPPY E+ GD
Sbjct: 808 FSYAIAVIGEPPYVESTGD 864
>gb|BE762088.1|BE762088 NXCI_076_H01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_076_H01 5' similar to Arabidopsis
thaliana sequence At5g20950 beta-D-glucan
exohydrolase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 198 bits (429), Expect = 6e-050
Identities = 84/123 (68%), Positives = 97/123 (78%)
Frame = +2 / +3
Query: 26 VYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPL 205
V RILRVKFTMGLFE+P + SLA +LG + HRELAREAVRKSLVLLKNGKS PLLPL
Sbjct: 3 VRRILRVKFTMGLFEHPMANPSLANQLGSKAHRELAREAVRKSLVLLKNGKSDSKPLLPL 182
Query: 206 PKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSES 385
K A KILVAG+H ++LG QC GWTITWQG SGNTT GTTIL I++ P+T+ Y E+
Sbjct: 183 DKNATKILVAGTHPDNLGYQCXGWTITWQGLSGNTTKGTTILEAIQSAXSPTTEXXYQEN 362
Query: 386 PDS 394
PD+
Sbjct: 363 PDA 371
Score = 112 bits (240), Expect = 2e-024
Identities = 61/122 (50%), Positives = 67/122 (54%)
Frame = -3 / -2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG S V+G I RI PCHVIVHP H PR +PATRIL AF
Sbjct: 367 SGFS**XXSVVGLXADWIASRIVVPLVVFPLNPCHVIVHPXH**PRLSG*VPATRILVAF 188
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL 31
+GS G D PFF +TRDFLTAS A+S C+ PS ARL G S PMVN T RIL
Sbjct: 187 LSKGSKGLLSDFPFFNKTRDFLTASLANSLCALLPSWLARLGFAIGCSKSPMVNFTLRIL 8
Query: 30 *T 25
T
Sbjct: 7 RT 2
>gb|BX680507.1|BX680507 BX680507 RS Pinus pinaster cDNA clone RS44E12, mRNA sequence
Length = 611
Score = 197 bits (427), Expect = 1e-049
Identities = 85/116 (73%), Positives = 96/116 (82%)
Frame = +2 / +3
Query: 5 MSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSS 184
M RI+DAV RILRVKFTMGLFE+P + SL +LG + HRELAREAVRKSLVLLKNGKS
Sbjct: 264 MPRINDAVRRILRVKFTMGLFEHPMANPSLVNQLGSKAHRELAREAVRKSLVLLKNGKSD 443
Query: 185 YAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATV 352
PLLPL K A KILVAG+HA++LG QCGGWTITWQG SGN+T GTTIL I++TV
Sbjct: 444 SKPLLPLNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTV 611
Score = 119 bits (255), Expect = 1e-026
Identities = 62/116 (53%), Positives = 67/116 (57%)
Frame = -3 / -2
Query: 351 TVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLP 172
TV I RI PC VIVHPPH PR AW+PATRI AF +GS G D P
Sbjct: 610 TVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAFLFKGSKGLLSDFP 431
Query: 171 FFRRTRDFLTASRASSRCSCFPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLM 4
FF TRDFLTAS A+S C+ PS RL G S PMVN T +IL TAS IL M
Sbjct: 430 FFNSTRDFLTASLANSLCALLPSWLTRLGLAMGCSKSPMVNFTLKILRTASFILGM 263
>gb|DR068751.1|DR068751 RTDK1_2_E04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_2_E04_A029 5', mRNA sequence
Length = 780
Score = 196 bits (424), Expect = 3e-049
Identities = 85/120 (70%), Positives = 95/120 (79%)
Frame = +2 / +2
Query: 2 PMSRIDDAVYRILRVKFTMGLFENPYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKS 181
P+SRI+DAV RILRVKFTMGLFE P + SLA +LG +EHRELAREAVRKSLVLLKNGKS
Sbjct: 419 PISRINDAVRRILRVKFTMGLFEQPLANPSLANQLGSKEHRELAREAVRKSLVLLKNGKS 598
Query: 182 SYAPLLPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPS 361
PLLPL K A KILV G+HA++LG QCGGWTI WQG SGN+T GTT L I+ V S
Sbjct: 599 MNNPLLPLNKNASKILVVGTHADNLGYQCGGWTIEWQGLSGNSTIGTTFLEAIKLAVSSS 778
Score = 118 bits (254), Expect = 2e-026
Identities = 58/97 (59%), Positives = 63/97 (64%)
Frame = -3 / -1
Query: 291 CHVIVHPPHWLPRSLAWLPATRILPAFFGRGSNGA*EDLPFFRRTRDFLTASRASSRCSC 112
CH IVHPPH PR A +P TRIL AF +GS G D PFF TRDFLTAS A+S CS
Sbjct: 708 CHSIVHPPH**PRLSA*VPTTRILEAFLFKGSKGLFIDFPFFNNTRDFLTASLANSLCSL 529
Query: 111 FPSSPARLESG*GFSNRPMVNLTRRIL*TASSILLMG 1
PS ARL G S P+VN T +IL TAS ILLMG
Sbjct: 528 LPSWLARLGLARGCSKSPIVNFTLKILRTASFILLMG 418
>gb|DR169308.1|DR169308 RTPHOS1_31_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_B02_A029 5', mRNA sequence
Length = 433
Score = 171 bits (369), Expect(2) = 7e-049
Identities = 72/101 (71%), Positives = 83/101 (82%)
Frame = +2 / +2
Query: 74 PYPDSSLAGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHAND 253
P + SL +LG + HRELAREAVRKSLVLLKNGKS+ PLLPL K A KILVAG+HA++
Sbjct: 131 PVANPSLVNQLGNKVHRELAREAVRKSLVLLKNGKSASKPLLPLNKNAAKILVAGTHADN 310
Query: 254 LGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVY 376
LG QCGGWTITWQG SGN+T GTTIL I++TV PST+VVY
Sbjct: 311 LGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVY 433
Score = 102 bits (218), Expect(2) = 3e-024
Identities = 51/95 (53%), Positives = 55/95 (57%)
Frame = -3 / -2
Query: 372 TTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAFFGRGSN 193
TT V G TV I RI PC VIVHPPH PR AW+PATRI AF +GS
Sbjct: 429 TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAFLFKGSK 250
Query: 192 GA*EDLPFFRRTRDFLTASRASSRCSCFPSSPARL 88
G D PFF TRDFLTAS A+S C+ PS RL
Sbjct: 249 GLLADFPFFNSTRDFLTASLANSLCTLLPSWLTRL 145
Score = 44.4 bits (91), Expect(2) = 7e-049
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = +2 / +1
Query: 5 MSRIDDAVYRILRVKFTMGLFENP 76
M R +DAV RILRVKFTMGLFE+P
Sbjct: 61 MPRRNDAVRRILRVKFTMGLFEHP 132
Score = 28.4 bits (56), Expect(2) = 3e-024
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3 / -3
Query: 75 GFSNRPMVNLTRRIL*TASSILLM 4
G S PMVN T +IL TAS +L M
Sbjct: 131 GCSKSPMVNFTLKILRTASFLLGM 60
>gb|CO363132.1|CO363132 RTK1_7_G05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_G05_A029 5', mRNA sequence
Length = 743
Score = 119 bits (256), Expect(2) = 2e-048
Identities = 47/66 (71%), Positives = 56/66 (84%)
Frame = +2 / -3
Query: 197 LPLPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVY 376
LPL K A KILVAG+HA++LG QCGGWTITWQG SGN+T GTTIL I++TV PST+VVY
Sbjct: 741 LPLNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVY 562
Query: 377 SESPDS 394
E+PD+
Sbjct: 561 QENPDA 544
Score = 94.1 bits (200), Expect(2) = 2e-048
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / -3
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 522 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 358
Score = 64.0 bits (134), Expect(2) = 3e-023
Identities = 28/52 (53%), Positives = 33/52 (63%)
Frame = -3 / +2
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H PHT P GIV+ RLSPNVSA G SPT T+A
Sbjct: 359 SITSGLPDIKITRHFTEPHTFLIVSAPPKGIVKLRLSPNVSA*GASPTRTMA 514
Score = 63.5 bits (133), Expect(2) = 3e-023
Identities = 34/65 (52%), Positives = 36/65 (55%)
Frame = -3 / +2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG S TT V G TV I RI PC VIVHPPH PR AW+PATRI AF
Sbjct: 548 SGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAF 727
Query: 210 FGRGS 196
+GS
Sbjct: 728 LFKGS 742
>gb|DR056258.1|DR056258 RTCA1_29_C09.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_29_C09_A029 3', mRNA sequence
Length = 714
Score = 114 bits (245), Expect(2) = 7e-047
Identities = 45/64 (70%), Positives = 54/64 (84%)
Frame = +2 / +1
Query: 203 LPKKAGKILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSE 382
L K A KILVAG+HA++LG QCGGWTITWQG SGN+T GTTIL I++TV PST+VVY E
Sbjct: 1 LNKNAAKILVAGTHADNLGYQCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQE 180
Query: 383 SPDS 394
+PD+
Sbjct: 181 NPDA 192
Score = 94.1 bits (200), Expect(2) = 7e-047
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 214 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 378
Score = 63.5 bits (133), Expect(2) = 7e-022
Identities = 28/52 (53%), Positives = 33/52 (63%)
Frame = -3 / -2
Query: 576 STTSXLPEMRTTTHLAXPHTDWXTLGPGAGIVRFRLSPNVSAYGGSPTTTIA 421
S TS LP+++ T H PHT P GIV+ RLSPNVSA G SPT T+A
Sbjct: 377 SITSGLPDIKITRHFTEPHTFLIVSAPPNGIVKLRLSPNVSA*GASPTRTMA 222
Score = 59.4 bits (124), Expect(2) = 7e-022
Identities = 32/60 (53%), Positives = 33/60 (55%)
Frame = -3 / -2
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG S TT V G TV I RI PC VIVHPPH PR AW+PATRI AF
Sbjct: 188 SGFS**TTSVEGLTVDLIASRIVVPLVEFPLNPCQVIVHPPH**PRLSAWVPATRIFAAF 9
>gb|CO162180.1|CO162180 FLD1_33_D11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_D11_A029 5', mRNA sequence
Length = 846
Score = 95.4 bits (203), Expect(2) = 2e-041
Identities = 35/57 (61%), Positives = 45/57 (78%)
Frame = +2 / +1
Query: 224 ILVAGSHANDLGNQCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
+LVAG+H ++LG QCGGWT+ WQG SGN T GTTIL I+ V PST+VVY ++PD+
Sbjct: 1 VLVAGTHPDNLGYQCGGWTMEWQGLSGNITVGTTILEAIKLAVSPSTEVVYEQNPDA 171
Score = 94.5 bits (201), Expect(2) = 2e-041
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIVVVGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 193 FSYAIVVVGEAPYAETFGDNLNLTIPLGGGDTIKTVCGSLKCLVILISGRPLVIE 357
>gb|BF516660.1|BF516660 NXSI_001_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_001_G06 5' similar to Arabidopsis thaliana
sequence At5g20950 beta-D-glucan exohydrolase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 422
Score = 167 bits (361), Expect = 1e-040
Identities = 72/118 (61%), Positives = 89/118 (75%)
Frame = +2 / +2
Query: 95 AGELGKQEHRELAREAVRKSLVLLKNGKSSYAPLLPLPKKAGKILVAGSHANDLGNQCGG 274
A +LG +EHR+LAREAVRKSLVLLKNGKS+ PLLPL K A KILVAG+H ++LG QCGG
Sbjct: 2 ANQLGSKEHRDLAREAVRKSLVLLKNGKSASQPLLPLNKNAPKILVAGTHPDNLGYQCGG 181
Query: 275 WTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDSGVLADKYDYAIVVVGEPP 448
WTI WQG SGN T GTTILS I++ V ST+VVY ++PD+ + ++ +VV P
Sbjct: 182 WTIEWQGLSGNITIGTTILSAIQSAVSSSTEVVYQQNPDANYVKEQGFSYAIVVVGEP 355
Score = 91.3 bits (194), Expect(2) = 3e-025
Identities = 49/96 (51%), Positives = 53/96 (55%)
Frame = -3 / -3
Query: 390 SGLSEYTTCVLGSTVASIPERIXXXXXXXXXXPCHVIVHPPHWLPRSLAWLPATRILPAF 211
SG TT V T I ERI PCH IVHPPH PR +PATRIL AF
Sbjct: 297 SGFC**TTSVEELTADWIAERIVVPMVMFPLKPCHSIVHPPH**PRLSG*VPATRILGAF 118
Query: 210 FGRGSNGA*EDLPFFRRTRDFLTASRASSRCSCFPS 103
+GS G D PFF +T+DFLTAS A S CS PS
Sbjct: 117 LFKGSKGWLADFPFFNKTKDFLTASLAKSLCSLLPS 10
Score = 43.0 bits (88), Expect(2) = 3e-025
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -3 / -3
Query: 489 GIVRFRLSPNVSAYGGSPTTTIA 421
G+V+ RLSPN+S GGSPTTTIA
Sbjct: 399 GMVKLRLSPNISV*GGSPTTTIA 331
>gb|CF671009.1|CF671009 RTCNT1_54_C10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_54_C10_A029 3', mRNA sequence
Length = 692
Score = 94.1 bits (200), Expect(2) = 1e-038
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / +1
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 154 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 318
Score = 86.8 bits (184), Expect(2) = 1e-038
Identities = 32/44 (72%), Positives = 38/44 (86%)
Frame = +2 / +1
Query: 263 QCGGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
QCGGWTITWQG SGN+T GTTIL I++TV PST+VVY E+PD+
Sbjct: 1 QCGGWTITWQGLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDA 132
>gb|DR100370.1|DR100370 STRR1_63_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_63_D08_A033 5', mRNA sequence
Length = 467
Score = 88.1 bits (187), Expect(2) = 6e-035
Identities = 35/54 (64%), Positives = 41/54 (75%)
Frame = +2 / +3
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVV 574
+ YAIVVVGE PYAET GDNLNLTIP G +VCG KC+V+L+SGR LV+
Sbjct: 150 FSYAIVVVGEAPYAETAGDNLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVI 311
Score = 80.4 bits (170), Expect(2) = 6e-035
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +2 / +3
Query: 269 GGWTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
GGWTITWQG SGNTT GTTIL I++ V PST+VVY E+PD+
Sbjct: 3 GGWTITWQGLSGNTTKGTTILEAIQSAVSPSTEVVYQENPDA 128
>gb|DR055806.1|DR055806 RTCA1_26_B12.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_26_B12_A029 3', mRNA sequence
Length = 623
Score = 88.1 bits (187), Expect(2) = 1e-030
Identities = 35/54 (64%), Positives = 41/54 (75%)
Frame = +2 / +2
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVV 574
+ YAIVVVGE PYAET GDNLNLTIP G +VCG KC+V+L+SGR LV+
Sbjct: 134 FSYAIVVVGEAPYAETAGDNLNLTIPLGGGDTINNVCGSVKCLVILVSGRPLVI 295
Score = 65.8 bits (138), Expect(2) = 1e-030
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +2 / +2
Query: 284 TWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
TWQG SGNTT GTTIL I++ V PST+VVY E+PD+
Sbjct: 2 TWQGLSGNTTKGTTILEAIQSAVSPSTEVVYQENPDA 112
>gb|DR169238.1|DR169238 RTPHOS1_31_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_B02_A029 3', mRNA sequence
Length = 666
Score = 94.1 bits (200), Expect(2) = 3e-030
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2 / +3
Query: 413 YDYAIVVVGEPPYAETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
+ YAIV+VGE PYAETFGDNLNLTIP G ++VCG KC+V+LISGR LV+E
Sbjct: 129 FSYAIVLVGEAPYAETFGDNLNLTIPLGGADTIKNVCGSVKCLVILISGRPLVIE 293
Score = 58.5 bits (122), Expect(2) = 3e-030
Identities = 23/35 (65%), Positives = 29/35 (82%)
Frame = +2 / +3
Query: 290 QGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDS 394
QG SGN+T GTTIL I++TV PST+VVY E+PD+
Sbjct: 3 QGLSGNSTKGTTILEAIKSTVSPSTEVVYQENPDA 107
>gb|DR018345.1|DR018345 STRS1_22_G03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_22_G03_A034 3', mRNA sequence
Length = 755
Score = 125 bits (268), Expect = 6e-028
Identities = 54/101 (53%), Positives = 64/101 (63%)
Frame = +2 / +3
Query: 275 WTITWQGSSGNTTAGTTILSGIEATVDPSTQVVYSESPDSGVLADKYDYAIVVVGEPPYA 454
WTI WQG SGN+T GTT L I+ V S V V + YAIVVVGE PYA
Sbjct: 3 WTIEWQGLSGNSTIGTTFLEAIKLAVSSSKVVYKKNPDVDYVKGKGFSYAIVVVGEAPYA 182
Query: 455 ETFGDNLNLTIPAPGPSVXQSVCGXAKCVVVLISGRXLVVE 577
E +GDNLNLTIP G ++VCG KC+V+LISGR LV++
Sbjct: 183 EYYGDNLNLTIPLSGGDTIKNVCGSLKCLVILISGRPLVIK 305
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.316 0.137 0.438
Matrix: BLOSUM62
Number of Hits to DB: 237,463,756
Number of Sequences: 355925
Number of extensions: 2961482
Number of successful extensions: 36359
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 47
effective length of database: 55,697,270
effective search space used: 8076104150
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)