TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750763.3.1
(819 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR695222.1|DR695222 EST1085315 Normalized pine embryo li... 352 2e-096
gb|BQ634030.1|BQ634030 NXRV063_H09_F NXRV (Nsf Xylem Root w... 350 9e-096
gb|DT631856.1|DT631856 EST1146787 Normalized pine embryo li... 345 3e-094
gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered lob... 338 2e-092
gb|BQ700242.1|BQ700242 NXRV103_B01_F NXRV (Nsf Xylem Root w... 330 8e-090
gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus adde... 329 1e-089
gb|CF478008.1|CF478008 RTWW3_17_E11.g1_A022 Well-watered lo... 325 2e-088
gb|CO200322.1|CO200322 GEO2_6_F04.g1_A032 Root gravitropism... 324 5e-088
gb|DR684038.1|DR684038 EST1074115 Normalized pine embryo li... 324 6e-088
gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root w... 314 7e-085
gb|CF400248.1|CF400248 RTWW1_4_C07.b1_A015 Well-watered lob... 309 2e-083
gb|DR090800.1|DR090800 RTAL1_17_A07.g1_A029 Roots plus adde... 298 2e-080
gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered lo... 297 6e-080
gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clon... 291 4e-078
gb|BG040772.1|BG040772 NXSI_114_H07_F NXSI (Nsf Xylem Side ... 287 7e-077
gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side ... 270 1e-071
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 269 2e-071
gb|DR117585.1|DR117585 RTMG1_7_G09.g1_A029 Roots minus magn... 267 6e-071
gb|DR180886.1|DR180886 RTMNUT1_35_A12.g1_A029 Roots minus m... 267 8e-071
gb|DT633426.1|DT633426 EST1148357 Normalized pine embryo li... 163 2e-070
gb|DR686230.1|DR686230 EST1076308 Normalized pine embryo li... 163 2e-070
gb|DR683957.1|DR683957 EST1074033 Normalized pine embryo li... 160 1e-069
gb|DT631978.1|DT631978 EST1146909 Normalized pine embryo li... 160 1e-069
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 262 2e-069
gb|BQ634633.1|BQ634633 NXRV071_D02_F NXRV (Nsf Xylem Root w... 259 1e-068
gb|BX250216.1|BX250216 BX250216 Pinus pinaster differenciat... 255 3e-067
gb|BX253884.1|BX253884 BX253884 Pinus pinaster differenciat... 253 1e-066
gb|BM492945.1|BM492945 NXRV_032_E05_F NXRV (Nsf Xylem Root ... 241 4e-063
gb|DR689988.1|DR689988 EST1080074 Normalized pine embryo li... 153 3e-062
gb|DR745375.1|DR745375 RTCU1_28_H07.g1_A029 Roots plus adde... 238 4e-062
gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus adde... 238 4e-062
gb|DR060099.1|DR060099 RTNIT1_25_E07.g1_A029 Roots minus ni... 221 5e-057
gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clon... 215 2e-055
gb|BX680745.1|BX680745 BX680745 RS Pinus pinaster cDNA clon... 214 6e-055
gb|DR078591.1|DR078591 RTFEPL1_5_E02.g1_A029 Roots plus add... 213 1e-054
gb|BE758614.1|BE758614 NXCI_069_B03_F NXCI (Nsf Xylem Compr... 212 2e-054
gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus mag... 210 8e-054
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 203 1e-051
gb|AW226228.1|AW226228 ST79H03 Pine TriplEx shoot tip libra... 197 1e-049
gb|BF778460.1|BF778460 NXSI_085_A08_F NXSI (Nsf Xylem Side ... 195 3e-049
gb|BE582301.1|BE582301 NXCI_031_G04_F NXCI (Nsf Xylem Compr... 191 5e-048
gb|BE810207.1|BE810207 NXCI_061_D08_F NXCI (Nsf Xylem Compr... 190 9e-048
gb|CX651754.1|CX651754 COLD1_54_C07.g1_A029 Root cold Pinus... 183 1e-045
gb|CX713220.1|CX713220 RTPQ1_7_F01.g1_A032 Roots treated wi... 183 1e-045
gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered lob... 179 2e-044
gb|BX253211.1|BX253211 BX253211 Pinus pinaster differenciat... 178 5e-044
gb|CO200002.1|CO200002 GEO2_4_G10.g1_A032 Root gravitropism... 178 5e-044
gb|CF385211.1|CF385211 RTDR1_2_C04.g1_A015 Loblolly pine ro... 174 8e-043
gb|DR177509.1|DR177509 RTMNUT1_5_F01.g1_A029 Roots minus mi... 171 8e-042
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 169 2e-041
gb|BF517621.1|BF517621 NXSI_028_A08_F NXSI (Nsf Xylem Side ... 169 3e-041
gb|BF517616.1|BF517616 NXSI_026_H09_F NXSI (Nsf Xylem Side ... 164 9e-040
gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Plani... 160 2e-038
gb|BQ697346.1|BQ697346 NXPV_053_A10_F NXPV (Nsf Xylem Plani... 160 2e-038
gb|CF478056.1|CF478056 RTWW3_17_A02.g1_A022 Well-watered lo... 159 2e-038
gb|BF010912.1|BF010912 NXCI_094_E12_F NXCI (Nsf Xylem Compr... 154 7e-037
gb|BQ698908.1|BQ698908 NXRV117_A01_F NXRV (Nsf Xylem Root w... 154 7e-037
gb|DR023359.1|DR023359 STRS1_57_C07.b1_A034 Shoot tip pitch... 154 7e-037
gb|DR069148.1|DR069148 RTDK1_5_E09.b1_A029 Roots, dark Pinu... 154 7e-037
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 153 1e-036
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 153 1e-036
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 148 4e-035
gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine r... 147 8e-035
gb|DR099478.1|DR099478 STRR1_55_H03.g1_A033 Stem Response R... 146 2e-034
gb|BQ291291.1|BQ291291 NXRV058_D01_F NXRV (Nsf Xylem Root w... 143 1e-033
gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered lob... 143 1e-033
gb|BF516737.1|BF516737 NXSI_002_G04_F NXSI (Nsf Xylem Side ... 138 6e-032
gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root w... 137 9e-032
gb|CV033627.1|CV033627 RTNACL1_35_D11.g1_A029 Roots plus ad... 133 2e-030
gb|BQ696318.1|BQ696318 NXPV_040_A01_F NXPV (Nsf Xylem Plani... 125 5e-028
gb|DR117422.1|DR117422 RTMG1_6_H01.g1_A029 Roots minus magn... 121 6e-027
gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered lo... 119 2e-026
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 118 6e-026
gb|CR354745.1|CR354745 CR354745 Pinus pinaster differenciat... 111 5e-024
gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered lo... 105 6e-022
gb|BF221021.1|BF221021 NXCI_162_B02_F NXCI (Nsf Xylem Compr... 100 1e-020
>gb|DR695222.1|DR695222 EST1085315 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEM16 3' end, mRNA sequence
Length = 857
Score = 352 bits (763), Expect = 2e-096
Identities = 131/157 (83%), Positives = 143/157 (91%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 331 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 510
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHIANG C
Sbjct: 511 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPC 690
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IT+QY+TN+IIHG+HIHDC+P GNAMVRSSP+HYGWR
Sbjct: 691 ITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYGWR 801
Score = 93.6 bits (198), Expect(2) = 5e-037
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -1
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 587 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 408
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 407 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 285
Score = 81.3 bits (171), Expect(2) = 5e-037
Identities = 33/49 (67%), Positives = 36/49 (73%)
Frame = -2 / -1
Query: 815 HP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
HP* +GELRTMAFP GLQSW+ PWM+ V Y VMQ P AM TL PRP
Sbjct: 797 HP*CVGELRTMAFPAGLQSWI*IPWMIMFVTYCTVMQGPFAM*TLTPRP 651
>gb|BQ634030.1|BQ634030 NXRV063_H09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_H09 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 727
Score = 350 bits (758), Expect = 9e-096
Identities = 130/156 (83%), Positives = 142/156 (91%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 114 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 293
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHIANG C
Sbjct: 294 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPC 473
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGW 816
IT+QY+TN+IIHG+HIHDC+P GNAMVRSSP+HYGW
Sbjct: 474 ITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYGW 581
Score = 93.6 bits (198), Expect(2) = 5e-037
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -1
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 370 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 191
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 190 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 68
Score = 81.3 bits (171), Expect(2) = 5e-037
Identities = 33/49 (67%), Positives = 36/49 (73%)
Frame = -2 / -1
Query: 815 HP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
HP* +GELRTMAFP GLQSW+ PWM+ V Y VMQ P AM TL PRP
Sbjct: 580 HP*CVGELRTMAFPAGLQSWI*IPWMIMFVTYCTVMQGPFAM*TLTPRP 434
>gb|DT631856.1|DT631856 EST1146787 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFD53 3' end, mRNA sequence
Length = 872
Score = 345 bits (747), Expect = 3e-094
Identities = 129/155 (83%), Positives = 141/155 (90%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 341 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 520
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHIANG C
Sbjct: 521 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPC 700
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYG 813
IT+QY+TN+IIHG+HIHDC+P GNAMVRSSP+HYG
Sbjct: 701 ITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYG 805
Score = 93.6 bits (198), Expect(2) = 7e-036
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 597 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 418
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 417 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 295
Score = 77.6 bits (163), Expect(2) = 7e-036
Identities = 32/48 (66%), Positives = 35/48 (72%)
Frame = -2 / -3
Query: 812 P*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
P* +GELRTMAFP GLQSW+ PWM+ V Y VMQ P AM TL PRP
Sbjct: 804 P*CVGELRTMAFPAGLQSWI*IPWMIMFVTYCTVMQGPFAM*TLTPRP 661
>gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_G09_A021 5', mRNA sequence
Length = 758
Score = 338 bits (733), Expect = 2e-092
Identities = 126/157 (80%), Positives = 143/157 (91%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 54 SSRRELSYLTCGTGNPIDDCWRCDPDWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 233
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DD+PVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG C
Sbjct: 234 DDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPC 413
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IT+QY+ +VIIHG+HIHDCKP GNAMVR SP+HYGWR
Sbjct: 414 ITVQYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWR 524
Score = 82.2 bits (173), Expect(2) = 3e-027
Identities = 32/68 (47%), Positives = 50/68 (73%)
Frame = -1 / -1
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+GDV +GA++VD L VHD+LL E DDHV L+DDP+RL +++ VA+ A +D +V+
Sbjct: 413 ARTVGDVDIGASAVDCLVTVHDKLLFELDDHVSLKDDPQRLVLNNSVAQSAWPGIDWIVV 234
Query: 528 ARVGDHVD 505
+ D+++
Sbjct: 233 IGICDNIE 210
Score = 60.2 bits (125), Expect(2) = 3e-027
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = -2 / -2
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVP 381
LP PPMA P PM QSA RL QS SQRQQSS+G PVP
Sbjct: 208 LPFCPPMAFLPNPMAQSASLCRLFSQSGSQRQQSSIGFPVP 86
>gb|BQ700242.1|BQ700242 NXRV103_B01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV103_B01 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 635
Score = 330 bits (715), Expect = 8e-090
Identities = 123/157 (78%), Positives = 137/157 (87%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 114 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 293
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGR NVHIANG C
Sbjct: 294 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRSVNVHIANGPC 473
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IT+QY+TN+IIHG+H DC+P NA+V SSP+ +GWR
Sbjct: 474 ITVQYVTNIIIHGIHXXDCRPVANALVXSSPTXFGWR 584
Score = 93.6 bits (198), Expect(2) = 6e-029
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -2
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 370 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 191
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 190 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 68
Score = 54.2 bits (112), Expect(2) = 6e-029
Identities = 25/45 (55%), Positives = 27/45 (60%)
Frame = -2 / -2
Query: 803 LGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
+GEL T AF GLQS PWM+ V Y VMQ P AM TL RP
Sbjct: 568 VGELXTRAFATGLQSXX*IPWMIMFVTYCTVMQGPFAM*TLTLRP 434
>gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_6_F07_A029 3', mRNA sequence
Length = 682
Score = 329 bits (713), Expect = 1e-089
Identities = 124/157 (78%), Positives = 139/157 (88%)
Frame = +1 / -3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YLSCGTGNPIDDCWRCD DW NNR RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 650 SSRRELSYLSCGTGNPIDDCWRCDPDWVNNRMRLADCAIGFGRNAIGGQNGRFYVVTDPN 471
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
D D V+PR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG C
Sbjct: 470 DYDAVDPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGANVHIANGPC 291
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IT+QY+ ++IIHG+HIHDCKP GNAMVR SP HYGWR
Sbjct: 290 ITVQYVKHIIIHGIHIHDCKPAGNAMVRDSPDHYGWR 180
Score = 74.4 bits (156), Expect(3) = 7e-031
Identities = 29/68 (42%), Positives = 49/68 (72%)
Frame = -1 / +3
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+G+V +G++ VD L AVHD+L E DDHV L++ P RL +++ +A+ A +R+D +V+
Sbjct: 291 ARTVGNVDIGSSPVDRLVAVHDKLFFELDDHVSLKNYP*RLRLNNSMAQRARSRIDCIVV 470
Query: 528 ARVGDHVD 505
+ DH++
Sbjct: 471 IGISDHIE 494
Score = 70.3 bits (147), Expect(3) = 7e-031
Identities = 30/44 (68%), Positives = 31/44 (70%)
Frame = -2 / +1
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDR 372
LP PPMA P PM QSA RL QS SQRQQSSMG PVPHD+
Sbjct: 496 LPFCPPMAFLPNPMAQSASLIRLFTQSGSQRQQSSMGFPVPHDK 627
Score = 27.6 bits (54), Expect(3) = 7e-031
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 819 APPIVAGRAAHHGVPRGLA 763
+PP++ R HHG+ GLA
Sbjct: 180 SPPVMIRRIPHHGISCGLA 236
>gb|CF478008.1|CF478008 RTWW3_17_E11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_17_E11_A022 5', mRNA sequence
Length = 709
Score = 325 bits (704), Expect = 2e-088
Identities = 123/155 (79%), Positives = 136/155 (87%)
Frame = +1 / +1
Query: 352 ARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSD 531
+RR L YLSCGTGNPIDDCWRC+ DW NNRKRLADC IGFG NA GGR+G+IYVVTD +D
Sbjct: 244 SRRELSYLSCGTGNPIDDCWRCNPDWENNRKRLADCAIGFGGNATGGRNGRIYVVTDSND 423
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACI 711
D VNPR GTLR+AVI EPLWIIF+RDMVI LKEEL MNS+KTIDGRGANVHIANGACI
Sbjct: 424 YDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDGRGANVHIANGACI 603
Query: 712 TIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGW 816
T+QY+ ++IIHG+HIHDCKP GNAMVR SP HYGW
Sbjct: 604 TVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGW 708
Score = 84.9 bits (179), Expect(2) = 3e-029
Identities = 46/103 (44%), Positives = 56/103 (54%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS +TA RRVP *ILP RPP+A P PM QSA FRL Q
Sbjct: 497 KIIHRGSV*ITAWRRVPGRGLTAS*SFESVTT*ILPFRPPVAFPPNPMAQSASLFRLFSQ 318
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYSDF 297
S QRQQSSMGLPVP D+ +++L+ S+ S S +
Sbjct: 317 SGLQRQQSSMGLPVPQDK*LSSLLELLILLSTASTTRSGCSTY 189
Score = 63.8 bits (133), Expect(2) = 3e-029
Identities = 30/49 (61%), Positives = 32/49 (65%)
Frame = -2 / -3
Query: 815 HP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
HP* GE T+AFP GLQSWM P M+ Y VMQAPLAM T AP P
Sbjct: 707 HP*CPGESLTIAFPAGLQSWM*IP*MIMWWTYCTVMQAPLAMWTFAPLP 561
>gb|CO200322.1|CO200322 GEO2_6_F04.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F04_A032 5', mRNA sequence
Length = 866
Score = 324 bits (702), Expect = 5e-088
Identities = 121/156 (77%), Positives = 137/156 (87%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YLSCGTGNPIDDCWRCD DW NNRKRLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 399 SSRRELSYLSCGTGNPIDDCWRCDPDWENNRKRLADCAIGFGRNAIGGKNGRFYVVTDPN 578
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
D D VNPR GTLR+AVI EPLWI F+RDMVI LKEELIMNS+KTIDGRG NVHIANG C
Sbjct: 579 DYDAVNPRPGTLRHAVIQSEPLWIYFQRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPC 758
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGW 816
IT+QY+ ++IIHG+HIHD +P GNAMVR SP+HYGW
Sbjct: 759 ITVQYVNHIIIHGIHIHDWQPAGNAMVRDSPTHYGW 866
Score = 72.5 bits (152), Expect(2) = 2e-027
Identities = 29/68 (42%), Positives = 48/68 (70%)
Frame = -1 / -1
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+ +V + +SVD L AVHD+L E DDHV L+ P+RL +++ +A+GA +DR+V+
Sbjct: 758 ARTVSNVDIYTSSVDCLVAVHDKLFFELDDHVSLKIYPQRLALNNSMAQGARPWIDRIVV 579
Query: 528 ARVGDHVD 505
+GD+++
Sbjct: 578 IGIGDNIE 555
Score = 70.3 bits (147), Expect(2) = 2e-027
Identities = 34/67 (50%), Positives = 41/67 (61%)
Frame = -2 / -2
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQS 324
LP PPMA P PM QSA FRL QS SQRQQSSMG PVP D+ +++L+ S
Sbjct: 553 LPFFPPMAFLPNPMAQSASLFRLFSQSGSQRQQSSMGFPVPQDK*LSSLLELLMLLSTIS 374
Query: 323 SHLSSYS 303
+ L+ S
Sbjct: 373 TTLAGSS 353
>gb|DR684038.1|DR684038 EST1074115 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO21 3' end, mRNA sequence
Length = 771
Score = 324 bits (701), Expect = 6e-088
Identities = 121/146 (82%), Positives = 132/146 (90%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 333 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 512
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHIANG C
Sbjct: 513 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPC 692
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAM 786
IT+QY+TN+IIHG+HIHDC+P GNAM
Sbjct: 693 ITVQYVTNIIIHGIHIHDCRPAGNAM 770
Score = 93.6 bits (198), Expect(2) = 2e-031
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 589 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 410
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 409 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 287
Score = 62.9 bits (131), Expect(2) = 2e-031
Identities = 25/39 (64%), Positives = 27/39 (69%)
Frame = -2 / -3
Query: 785 MAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
MAFP GLQSW+ PWM+ V Y VMQ P AM TL PRP
Sbjct: 769 MAFPAGLQSWI*IPWMIMFVTYCTVMQGPFAM*TLTPRP 653
>gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_F12 5' similar to Arabidopsis thaliana
sequence At4g13710 putative pectate lyase A11 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 728
Score = 314 bits (679), Expect = 7e-085
Identities = 114/152 (75%), Positives = 135/152 (88%)
Frame = +1 / +3
Query: 364 LGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPV 543
LGYLSC TGNPIDDCWRCD +W +RKRLADC IGFGR+A+GG+ G++Y+VTDP+D D V
Sbjct: 6 LGYLSCVTGNPIDDCWRCDPNWERDRKRLADCAIGFGRDALGGKHGRLYMVTDPNDYDAV 185
Query: 544 NPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQY 723
NPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHI NG CIT+QY
Sbjct: 186 NPRPGTLRHAVIQSEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGVNVHIGNGPCITVQY 365
Query: 724 ITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
++++IIHG+H+HDC+P GNAMVR SP+HYGWR
Sbjct: 366 VSHIIIHGIHVHDCRPAGNAMVRDSPTHYGWR 461
Score = 73.5 bits (154), Expect(2) = 1e-024
Identities = 29/66 (43%), Positives = 43/66 (65%)
Frame = -1 / -1
Query: 705 GTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIA 526
G + +V + SVD L VHD+ LLE DDHV LEDDP+ L ++DGV + A + + R++I
Sbjct: 347 GAVPNVDINTPSVDCLVTVHDQFLLELDDHVSLEDDPQGLALNDGVTQSAGSWIHRIIIV 168
Query: 525 RVGDHV 508
+ H+
Sbjct: 167 GIRHHI 150
Score = 60.2 bits (125), Expect(2) = 1e-024
Identities = 28/46 (60%), Positives = 29/46 (63%)
Frame = -2 / -2
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYP 366
LP PP A P PM QSA+RF Q S RQQSSMGLPV DR P
Sbjct: 145 LPCLPPRASLPNPMAQSAKRFLSRSQLGSHRQQSSMGLPVTQDR*P 8
>gb|CF400248.1|CF400248 RTWW1_4_C07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 3', mRNA sequence
Length = 715
Score = 309 bits (669), Expect = 2e-083
Identities = 116/152 (76%), Positives = 134/152 (88%)
Frame = +1 / -3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 662 SSRRELSYLTCGTGNPIDDCWRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 483
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DD+PVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG C
Sbjct: 482 DDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPC 303
Query: 709 ITIQYITNVIIHGLHIHDCKPTGNAMVRSSPS 804
IT+QY+ +VIIHG+HIHDCKP GN P+
Sbjct: 302 ITVQYVKHVIIHGIHIHDCKPGGNGHGEGFPN 207
Score = 79.9 bits (168), Expect(2) = 9e-027
Identities = 31/68 (45%), Positives = 50/68 (73%)
Frame = -1 / +3
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+G+V +GA++VD L VHD+LL E DDHV L+DDP+RL +++ VA+ A +D +V+
Sbjct: 303 ARTVGNVDIGASAVDCLVTVHDKLLFELDDHVSLKDDPQRLVLNNSVAQSAWPGIDWIVV 482
Query: 528 ARVGDHVD 505
+ D+++
Sbjct: 483 IGICDNIE 506
Score = 60.6 bits (126), Expect(2) = 9e-027
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = -2 / +1
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVP 381
LP PPMA P PM QSA RL QS SQRQQSS+G PVP
Sbjct: 508 LPFCPPMAFLPNPMAQSASLCRLFSQSASQRQQSSIGFPVP 630
>gb|DR090800.1|DR090800 RTAL1_17_A07.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_17_A07_A029 5', mRNA sequence
Length = 704
Score = 298 bits (646), Expect = 2e-080
Identities = 111/139 (79%), Positives = 128/139 (92%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 287 SSRRELSYLTCGTGNPIDDCWRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 466
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DD+PVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG C
Sbjct: 467 DDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPC 646
Query: 709 ITIQYITNVIIHGLHIHDC 765
IT+QY+ +VIIHG+HIHDC
Sbjct: 647 ITVQYVKHVIIHGIHIHDC 703
Score = 82.2 bits (173), Expect(2) = 2e-027
Identities = 32/68 (47%), Positives = 50/68 (73%)
Frame = -1 / -2
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+GDV +GA++VD L VHD+LL E DDHV L+DDP+RL +++ VA+ A +D +V+
Sbjct: 646 ARTVGDVDIGASAVDCLVTVHDKLLFELDDHVSLKDDPQRLVLNNSVAQSAWPGIDWIVV 467
Query: 528 ARVGDHVD 505
+ D+++
Sbjct: 466 IGICDNIE 443
Score = 60.6 bits (126), Expect(2) = 2e-027
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = -2 / -3
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVP 381
LP PPMA P PM QSA RL QS SQRQQSS+G PVP
Sbjct: 441 LPFCPPMAFLPNPMAQSASLCRLFSQSASQRQQSSIGFPVP 319
>gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_B05_A015 5', mRNA sequence
Length = 738
Score = 297 bits (643), Expect = 6e-080
Identities = 111/137 (81%), Positives = 126/137 (91%)
Frame = +1 / +1
Query: 409 WRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEE 588
WRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+DD+PVNPR GTLR+AVI E
Sbjct: 1 WRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPNDDNPVNPRPGTLRHAVIQNE 180
Query: 589 PLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCK 768
PLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG CIT+QY+ +VIIHG+HIHDCK
Sbjct: 181 PLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCK 360
Query: 769 PTGNAMVRSSPSHYGWR 819
P GNAMVR SP+HYGWR
Sbjct: 361 PGGNAMVRDSPTHYGWR 411
>gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clone RS03C05 similar to PECTATE
LYASE, mRNA sequence
Length = 621
Score = 291 bits (630), Expect = 4e-078
Identities = 110/131 (83%), Positives = 120/131 (91%)
Frame = +1 / +1
Query: 427 WHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIF 606
W NRKRLADCGIGFGRNAIGGRDG+ YVVTDP DDDPVNPR GTLR+AVI EPLWIIF
Sbjct: 1 WERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPRPGTLRHAVIQSEPLWIIF 180
Query: 607 KRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAM 786
+RDMVI LKEELIMNS+KTIDGRG NVHIANG CIT+QY+TN+IIHG+HIHDC+P GNAM
Sbjct: 181 QRDMVIMLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHIHDCRPAGNAM 360
Query: 787 VRSSPSHYGWR 819
VRSSP+HYGWR
Sbjct: 361 VRSSPTHYGWR 393
Score = 87.2 bits (184), Expect(2) = 7e-027
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = -2 / -2
Query: 815 HP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
HP* +GELRTMAFP GLQSW+ PWM+ V Y VMQ P AMCTL PRP
Sbjct: 389 HP*CVGELRTMAFPAGLQSWI*IPWMIMFVTYCTVMQGPFAMCTLTPRP 243
Score = 53.8 bits (111), Expect(2) = 7e-027
Identities = 29/57 (50%), Positives = 30/57 (52%)
Frame = -2 / -2
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRL 435
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L
Sbjct: 179 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLL 9
>gb|BG040772.1|BG040772 NXSI_114_H07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_114_H07 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 542
Score = 287 bits (621), Expect = 7e-077
Identities = 107/142 (75%), Positives = 127/142 (89%)
Frame = +1 / +3
Query: 331 RSINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIY 510
RSI+N T +R L +LSCGTGNPIDDCWRCD +W +NR+RLADCGIGFGRNA+GG++G+ Y
Sbjct: 117 RSIDNSTRKRELAFLSCGTGNPIDDCWRCDPNWESNRQRLADCGIGFGRNALGGKNGRFY 296
Query: 511 VVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVH 690
+VTDP+D D VNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVH
Sbjct: 297 LVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFERDMVIQLKEELIMNSYKTIDGRGVNVH 476
Query: 691 IANGACITIQYITNVIIHGLHI 756
IANG CIT+QY+TN+IIHG+H+
Sbjct: 477 IANGPCITVQYVTNIIIHGIHV 542
Score = 79.4 bits (167), Expect(2) = 2e-031
Identities = 37/56 (66%), Positives = 38/56 (67%)
Frame = -2 / -2
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLM 336
LP PP A P PMPQSARR LL Q SQRQQSSMGLPVPHDR R V+L M
Sbjct: 289 LPFLPPRAFLPNPMPQSARRCLLLSQLGSQRQQSSMGLPVPHDRKASSRFLVLLSM 122
Score = 76.7 bits (161), Expect(2) = 2e-031
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -1 / -1
Query: 705 GTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIA 526
G + +VH+ A S+D VHD+LLL+ DDH+ LEDDPERL ++ GV + A + + ++I
Sbjct: 491 GPVCNVHIDAPSIDCFVTVHDQLLLQLDDHISLEDDPERLCLNHGVTQSAGSWIHGIIIV 312
Query: 525 RVGDHV 508
R+ D +
Sbjct: 311 RIRDQI 294
>gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_103_C07 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 547
Score = 270 bits (583), Expect = 1e-071
Identities = 102/127 (80%), Positives = 116/127 (91%)
Frame = +1 / +2
Query: 439 RKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDM 618
RKRLADCGIGFGR+AIGG++G+ Y VTDP+D D VNPR GTLR+AVI EPLWI+F+RDM
Sbjct: 2 RKRLADCGIGFGRDAIGGKNGRFYRVTDPNDYDAVNPRPGTLRHAVIQTEPLWIVFERDM 181
Query: 619 VITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSS 798
VITLKEELIMNSFKTIDGRG NVHIANG CIT+QY+TN+IIHG+H+HDCKP GNAMVR S
Sbjct: 182 VITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDS 361
Query: 799 PSHYGWR 819
P+HYGWR
Sbjct: 362 PTHYGWR 382
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 269 bits (582), Expect = 2e-071
Identities = 103/127 (81%), Positives = 117/127 (92%)
Frame = +1 / -2
Query: 439 RKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDM 618
R+RLADC IGFGRNAIGG++G+ YVVTDP+DD+PVNPR GTLR+AVI EPLWIIF+RDM
Sbjct: 792 RQRLADCAIGFGRNAIGGQNGRFYVVTDPNDDNPVNPRPGTLRHAVIQNEPLWIIFERDM 613
Query: 619 VITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSS 798
VI LKEELIMNS+KTIDGRGANVHIANG CIT+QY+ +VIIHG+HIHDCKP GNAMVR S
Sbjct: 612 VIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKPGGNAMVRDS 433
Query: 799 PSHYGWR 819
P+HYGWR
Sbjct: 432 PTHYGWR 412
>gb|DR117585.1|DR117585 RTMG1_7_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 5', mRNA sequence
Length = 875
Score = 267 bits (578), Expect = 6e-071
Identities = 101/129 (78%), Positives = 117/129 (90%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 487 SSRRELSYLTCGTGNPIDDCWRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 666
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DD+PVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+ TIDGRGANVHIANG C
Sbjct: 667 DDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSY*TIDGRGANVHIANGPC 846
Query: 709 ITIQYITNV 735
IT+QY+ +V
Sbjct: 847 ITVQYVKHV 873
Score = 82.2 bits (173), Expect(2) = 2e-027
Identities = 32/68 (47%), Positives = 50/68 (73%)
Frame = -1 / -3
Query: 708 AGTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVI 529
A T+GDV +GA++VD L VHD+LL E DDHV L+DDP+RL +++ VA+ A +D +V+
Sbjct: 846 ARTVGDVDIGASAVDCLVTVHDKLLFELDDHVSLKDDPQRLVLNNSVAQSAWPGIDWIVV 667
Query: 528 ARVGDHVD 505
+ D+++
Sbjct: 666 IGICDNIE 643
Score = 60.6 bits (126), Expect(2) = 2e-027
Identities = 27/41 (65%), Positives = 28/41 (68%)
Frame = -2 / -1
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVP 381
LP PPMA P PM QSA RL QS SQRQQSS+G PVP
Sbjct: 641 LPFCPPMAFLPNPMAQSASLCRLFSQSASQRQQSSIGFPVP 519
>gb|DR180886.1|DR180886 RTMNUT1_35_A12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_35_A12_A029 5', mRNA sequence
Length = 767
Score = 267 bits (577), Expect = 8e-071
Identities = 102/132 (77%), Positives = 116/132 (87%)
Frame = +1 / +1
Query: 331 RSINNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIY 510
RSI+N T RR LGYLSCGTGNPIDDCWRCD +W NRKRLADC IGFGR+A+GG++G+ Y
Sbjct: 370 RSIDNSTRRRELGYLSCGTGNPIDDCWRCDPNWERNRKRLADCAIGFGRDALGGKNGRFY 549
Query: 511 VVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVH 690
+VTDP+D D VNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVH
Sbjct: 550 LVTDPNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELIMNSYKTIDGRGVNVH 729
Query: 691 IANGACITIQYI 726
IANG CIT+QY+
Sbjct: 730 IANGPCITVQYV 765
Score = 73.0 bits (153), Expect(2) = 1e-027
Identities = 35/56 (62%), Positives = 37/56 (66%)
Frame = -2 / -1
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDRYPRFRRAVMLLM 336
LP PP A P PM QSARRF L Q SQRQQSSMGLPVP +R P R V+L M
Sbjct: 542 LPFFPPRASLPNPMAQSARRFLLRSQLGSQRQQSSMGLPVPQER*PSSRLLVLLSM 375
Score = 70.7 bits (148), Expect(2) = 1e-027
Identities = 28/66 (42%), Positives = 45/66 (68%)
Frame = -1 / -3
Query: 705 GTIGDVHVGAASVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIA 526
G + +V++ A SVD L VHD+LLLE DDHV LE++P+RL ++ GV + + R+ ++I
Sbjct: 744 GPVCNVNIHAPSVDCLVTVHDQLLLELDDHVSLENNPQRLCLNHGVTQSSRTRIHGIIIV 565
Query: 525 RVGDHV 508
+ D +
Sbjct: 564 GIRDQI 547
>gb|DT633426.1|DT633426 EST1148357 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU77 3' end, mRNA sequence
Length = 861
Score = 163 bits (351), Expect(3) = 2e-070
Identities = 64/79 (81%), Positives = 70/79 (88%)
Frame = +1 / +1
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACI 711
DDPVNP +GTLRY VI EEPLWIIFKRDMVI LKEELIMNS+KTIDGRG NVHIANG CI
Sbjct: 472 DDPVNPWRGTLRYEVIQEEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCI 651
Query: 712 TIQYITNVIIHGLHIHDCK 768
TIQ + ++IIH +HIHDCK
Sbjct: 652 TIQDVNHIIIHNIHIHDCK 708
Score = 114 bits (243), Expect(3) = 2e-070
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
+ RR L +LS TGNPIDDCW D +W +RKRLADCG+GFG++AIGGR+G+IYVV DP
Sbjct: 292 STRRELAFLSHATGNPIDDCWMGDPNWRRDRKRLADCGVGFGKDAIGGREGRIYVVRDPG 471
Query: 529 DD 534
DD
Sbjct: 472 DD 477
Score = 27.6 bits (54), Expect(3) = 2e-070
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 781 AMVRSSPSHYGWR 819
A+VR SPSHYG R
Sbjct: 730 ALVRDSPSHYGLR 768
>gb|DR686230.1|DR686230 EST1076308 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABD75 3' end, mRNA sequence
Length = 740
Score = 163 bits (351), Expect(3) = 2e-070
Identities = 64/79 (81%), Positives = 70/79 (88%)
Frame = +1 / +3
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACI 711
DDPVNP +GTLRY VI EEPLWIIFKRDMVI LKEELIMNS+KTIDGRG NVHIANG CI
Sbjct: 345 DDPVNPWRGTLRYEVIQEEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNVHIANGPCI 524
Query: 712 TIQYITNVIIHGLHIHDCK 768
TIQ + ++IIH +HIHDCK
Sbjct: 525 TIQDVNHIIIHNIHIHDCK 581
Score = 114 bits (243), Expect(3) = 2e-070
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
+ RR L +LS TGNPIDDCW D +W +RKRLADCG+GFG++AIGGR+G+IYVV DP
Sbjct: 165 STRRELAFLSHATGNPIDDCWMGDPNWRRDRKRLADCGVGFGKDAIGGREGRIYVVRDPG 344
Query: 529 DD 534
DD
Sbjct: 345 DD 350
Score = 27.6 bits (54), Expect(3) = 2e-070
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +3
Query: 781 AMVRSSPSHYGWR 819
A+VR SPSHYG R
Sbjct: 603 ALVRDSPSHYGLR 641
>gb|DR683957.1|DR683957 EST1074033 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAN32 3' end, mRNA sequence
Length = 897
Score = 160 bits (345), Expect(3) = 1e-069
Identities = 63/79 (79%), Positives = 69/79 (87%)
Frame = +1 / +2
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACI 711
DDPVNP +GTLRY VI EEPLWIIFKR MVI LKEELIMNS+KTIDGRG NVHIANG CI
Sbjct: 464 DDPVNPWRGTLRYGVIQEEPLWIIFKRGMVIQLKEELIMNSYKTIDGRGVNVHIANGPCI 643
Query: 712 TIQYITNVIIHGLHIHDCK 768
TIQ + ++IIH +HIHDCK
Sbjct: 644 TIQDVNHIIIHNIHIHDCK 700
Score = 114 bits (243), Expect(3) = 1e-069
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
+ RR L +LS TGNPIDDCW D +W +RKRLADCG+GFG++AIGGR+G+IYVV DP
Sbjct: 284 STRRELAFLSHATGNPIDDCWMGDPNWRRDRKRLADCGVGFGKDAIGGREGRIYVVRDPG 463
Query: 529 DD 534
DD
Sbjct: 464 DD 469
Score = 27.6 bits (54), Expect(3) = 1e-069
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 781 AMVRSSPSHYGWR 819
A+VR SPSHYG R
Sbjct: 722 ALVRDSPSHYGLR 760
>gb|DT631978.1|DT631978 EST1146909 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFF03 3' end, mRNA sequence
Length = 846
Score = 160 bits (345), Expect(3) = 1e-069
Identities = 63/79 (79%), Positives = 69/79 (87%)
Frame = +1 / +1
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACI 711
DDPVNP +GTLRY VI EEPLWIIFKR MVI LKEELIMNS+KTIDGRG NVHIANG CI
Sbjct: 472 DDPVNPWRGTLRYGVIQEEPLWIIFKRGMVIQLKEELIMNSYKTIDGRGVNVHIANGPCI 651
Query: 712 TIQYITNVIIHGLHIHDCK 768
TIQ + ++IIH +HIHDCK
Sbjct: 652 TIQDVNHIIIHNIHIHDCK 708
Score = 114 bits (243), Expect(3) = 1e-069
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
+ RR L +LS TGNPIDDCW D +W +RKRLADCG+GFG++AIGGR+G+IYVV DP
Sbjct: 292 STRRELAFLSHATGNPIDDCWMGDPNWRRDRKRLADCGVGFGKDAIGGREGRIYVVRDPG 471
Query: 529 DD 534
DD
Sbjct: 472 DD 477
Score = 27.6 bits (54), Expect(3) = 1e-069
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 781 AMVRSSPSHYGWR 819
A+VR SPSHYG R
Sbjct: 730 ALVRDSPSHYGLR 768
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 262 bits (567), Expect = 2e-069
Identities = 100/127 (78%), Positives = 114/127 (89%)
Frame = +1 / +2
Query: 439 RKRLADCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDM 618
RKRLADC IGFGRNAIGG++G+ YVVTDP+D D VNPR GTLR+AVI EPLWI F+RDM
Sbjct: 2 RKRLADCAIGFGRNAIGGQNGRFYVVTDPNDYDAVNPRPGTLRHAVIQTEPLWITFERDM 181
Query: 619 VITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSS 798
VI LKEELIMNS+KTIDGRG NVHIANG CIT+QY++++IIHG+HIHDCKP GNAMVR S
Sbjct: 182 VIQLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVSHIIIHGIHIHDCKPAGNAMVRDS 361
Query: 799 PSHYGWR 819
P+HYGWR
Sbjct: 362 PTHYGWR 382
>gb|BQ634633.1|BQ634633 NXRV071_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV071_D02 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 259 bits (561), Expect = 1e-068
Identities = 100/121 (82%), Positives = 106/121 (87%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 115 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 294
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVIH EPLWIIF+RDMVI LKEELIMNS+KTI GR VHIANG C
Sbjct: 295 DDDPVNPRPGTLRHAVIHSEPLWIIFQRDMVIMLKEELIMNSYKTIYGRXVXVHIANGXC 474
Query: 709 I 711
I
Sbjct: 475 I 477
>gb|BX250216.1|BX250216 BX250216 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP033H01 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 664
Score = 255 bits (551), Expect = 3e-067
Identities = 98/120 (81%), Positives = 105/120 (87%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 304 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 483
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI L EELIMNS++TIDGRG NVHIA G C
Sbjct: 484 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIML*EELIMNSYQTIDGRGVNVHIAXGPC 663
Score = 93.6 bits (198), Expect(2) = 2e-021
Identities = 48/101 (47%), Positives = 58/101 (57%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQSARRFRLLCQ 426
K+I GS MTA*R VP * LPS PPMA PKPMPQSA F L Q
Sbjct: 560 KIIHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSLPPMAFLPKPMPQSASLFLLRSQ 381
Query: 425 SESQRQQSSMGLPVPHDRYPRFRRAVMLLMDLQSSHLSSYS 303
S SQRQQSSMG PVP ++ P +++L+ S+ +S +S
Sbjct: 380 SGSQRQQSSMGFPVPQEK*PSCLLELLILLSTISTTISGFS 258
Score = 29.0 bits (57), Expect(2) = 2e-021
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -3
Query: 707 QAPLAMCTLAPRP 669
Q P AMCTL PRP
Sbjct: 662 QGPXAMCTLTPRP 624
>gb|BX253884.1|BX253884 BX253884 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP089H11 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 662
Score = 253 bits (547), Expect = 1e-066
Identities = 97/115 (84%), Positives = 103/115 (89%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 317 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 496
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHI 693
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHI
Sbjct: 497 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHI 661
>gb|BM492945.1|BM492945 NXRV_032_E05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_032_E05 5' similar to Arabidopsis thaliana
sequence At1g04680 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 473
Score = 241 bits (521), Expect = 4e-063
Identities = 94/120 (78%), Positives = 100/120 (83%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 114 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 293
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGAC 708
DD VNP GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTI R VHIANG C
Sbjct: 294 DDXXVNPXPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIXXRXVXVHIANGPC 473
>gb|DR689988.1|DR689988 EST1080074 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACP80 3' end, mRNA sequence
Length = 811
Score = 153 bits (328), Expect(2) = 3e-062
Identities = 57/69 (82%), Positives = 64/69 (92%)
Frame = +1 / +2
Query: 613 DMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVR 792
DMVI LKEELIMNS+KTIDGRG NVHIANG CIT+QY+TN+IIHG+HIHD +P GNAMVR
Sbjct: 161 DMVIMLKEELIMNSYKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHIHDSRPAGNAMVR 340
Query: 793 SSPSHYGWR 819
SSP+HYGWR
Sbjct: 341 SSPTHYGWR 367
Score = 106 bits (226), Expect(2) = 3e-062
Identities = 42/51 (82%), Positives = 44/51 (86%)
Frame = +1 / +1
Query: 454 DCGIGFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIF 606
DCGI FGRNAIGGRDG+ YVVTDP DDDPVNPR GTLR+AVI EPL IIF
Sbjct: 1 DCGIDFGRNAIGGRDGRFYVVTDPRDDDPVNPRPGTLRHAVIQSEPLCIIF 153
Score = 74.8 bits (157), Expect(2) = 7e-021
Identities = 31/49 (63%), Positives = 34/49 (69%)
Frame = -2 / -2
Query: 815 HP*WLGELRTMAFPVGLQSWMWSPWMMTLVMYWMVMQAPLAMCTLAPRP 669
HP* +GELRTMAFP GL SW+ PWM+ V Y VMQ P AM TL P P
Sbjct: 363 HP*CVGELRTMAFPAGLLSWI*IPWMIMFVTYCTVMQGPFAM*TLTPLP 217
Score = 46.0 bits (94), Expect(2) = 7e-021
Identities = 24/50 (48%), Positives = 26/50 (52%)
Frame = -2 / -3
Query: 605 KMIQSGSSWMTA*RRVPXXXXXXXXXXXXXXX*ILPSRPPMALRPKPMPQ 456
K++ GS MTA*R VP * LPSRPPMA PK MPQ
Sbjct: 152 KIMHRGSL*MTA*RSVPGLGFTGSSSLGSVTT*NLPSRPPMAFLPKSMPQ 3
>gb|DR745375.1|DR745375 RTCU1_28_H07.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_28_H07_A029 5', mRNA sequence
Length = 327
Score = 238 bits (514), Expect = 4e-062
Identities = 91/108 (84%), Positives = 97/108 (89%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 2 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 181
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDG
Sbjct: 182 DDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDG 325
>gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_35_H02_A029 3', mRNA sequence
Length = 753
Score = 238 bits (514), Expect = 4e-062
Identities = 87/118 (73%), Positives = 106/118 (89%)
Frame = +1 / -1
Query: 466 GFGRNAIGGRDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELI 645
GFGR+A+GG+ G++Y+VTDP+D D VNPR GTLR+AVI EPLWIIF+RDMVI LKEELI
Sbjct: 750 GFGRDALGGKHGRLYMVTDPNDYDAVNPRPGTLRHAVIQSEPLWIIFQRDMVIQLKEELI 571
Query: 646 MNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
MNS+KTIDGRG NVHI NG CIT+QY++++IIHG+H+HDC+P GNAMVR SP+HYGWR
Sbjct: 570 MNSYKTIDGRGVNVHIGNGPCITVQYVSHIIIHGIHVHDCRPAGNAMVRDSPTHYGWR 397
>gb|DR060099.1|DR060099 RTNIT1_25_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E07_A029 5', mRNA sequence
Length = 841
Score = 221 bits (477), Expect = 5e-057
Identities = 85/111 (76%), Positives = 96/111 (86%)
Frame = +1 / +3
Query: 340 NNITARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVT 519
N +++R L YLSCGTGNPIDDCWRCD DW NNRKRLADC IGFGRNAIGG++G+ YVVT
Sbjct: 507 NISSSKRELSYLSCGTGNPIDDCWRCDPDWENNRKRLADCAIGFGRNAIGGQNGRFYVVT 686
Query: 520 DPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
DP+D D VNPR GTLR+AVI EPLWI F+RDMV+ LKEELIMNS+KTIDG
Sbjct: 687 DPNDYDAVNPRPGTLRHAVIQTEPLWITFERDMVMQLKEELIMNSYKTIDG 839
Score = 72.1 bits (151), Expect(2) = 7e-025
Identities = 32/44 (72%), Positives = 32/44 (72%)
Frame = -2 / -1
Query: 503 LPSRPPMALRPKPMPQSARRFRLLCQSESQRQQSSMGLPVPHDR 372
LP PPMA P PM QSA FRL QS SQRQQSSMGLPVP DR
Sbjct: 670 LPF*PPMAFLPNPMAQSASLFRLFSQSGSQRQQSSMGLPVPQDR 539
Score = 62.0 bits (129), Expect(2) = 7e-025
Identities = 24/55 (43%), Positives = 39/55 (70%)
Frame = -1 / -3
Query: 672 SVDGLEAVHDELLLERDDHVPLEDDPERLFVDDGVAEGALARVDRVVIARVGDHV 508
+VD L AVHD+L E DHV L+ DP+RL +++G+A+ A +DR+V+ + +H+
Sbjct: 839 AVDCLVAVHDKLFFELHDHVSLKGDPQRLRLNNGMAQRAGPGIDRIVVVGISNHI 675
>gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clone RS40C03, mRNA sequence
Length = 511
Score = 215 bits (465), Expect = 2e-055
Identities = 81/104 (77%), Positives = 93/104 (89%)
Frame = +1 / +1
Query: 508 YVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANV 687
Y+VTDP+D D V PR GTLR+AVI EPLWIIFKRDMVI LKEELIMNS+KTIDGRG NV
Sbjct: 4 YMVTDPNDYDAVTPRPGTLRHAVIQTEPLWIIFKRDMVIQLKEELIMNSYKTIDGRGVNV 183
Query: 688 HIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
HIANG CIT+QY++++IIHG+H+HDCKP GNAMVR SP+HYGWR
Sbjct: 184 HIANGPCITVQYVSHIIIHGIHVHDCKPAGNAMVRDSPTHYGWR 315
>gb|BX680745.1|BX680745 BX680745 RS Pinus pinaster cDNA clone RS48A10, mRNA sequence
Length = 571
Score = 214 bits (462), Expect = 6e-055
Identities = 83/107 (77%), Positives = 92/107 (85%)
Frame = +1 / +2
Query: 352 ARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSD 531
+RR L YL+CGTGNPIDDCWRC+ DW NNRKRLADC IGFG NA GGR+G+IYVVTD +D
Sbjct: 251 SRRELSYLTCGTGNPIDDCWRCNPDWENNRKRLADCAIGFGGNATGGRNGRIYVVTDSND 430
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
D VNPR GTLR+AVI EPLWIIF+RDMVI LKEEL MNS+KTIDG
Sbjct: 431 YDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDG 571
>gb|DR078591.1|DR078591 RTFEPL1_5_E02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_E02_A029 5', mRNA sequence
Length = 748
Score = 213 bits (460), Expect = 1e-054
Identities = 80/102 (78%), Positives = 92/102 (90%)
Frame = +1 / +3
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 441 SSRRELSYLTCGTGNPIDDCWRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 620
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNS 654
DD+PVNPR GTLR+AVI EPLWIIF+RDMVI L EELIMNS
Sbjct: 621 DDNPVNPRPGTLRHAVIQNEPLWIIFERDMVIQLXEELIMNS 746
>gb|BE758614.1|BE758614 NXCI_069_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_B03 5' similar to Arabidopsis
thaliana sequence At1g67750 pectate lyase 1-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 434
Score = 212 bits (458), Expect = 2e-054
Identities = 82/109 (75%), Positives = 93/109 (85%)
Frame = +1 / +1
Query: 493 RDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
R+G+IYVV D +D D VNPR GTLR+AVI EPLWIIF+RDMVI LKEEL MNS+KTIDG
Sbjct: 1 RNGRIYVVADSNDYDAVNPRPGTLRHAVIQTEPLWIIFQRDMVIQLKEELFMNSYKTIDG 180
Query: 673 RGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
ANVHIANGACIT+QY+ ++IIHG+HIHDCKP GNA VR SP HYGWR
Sbjct: 181 XXANVHIANGACITVQYVHHIIIHGIHIHDCKPAGNATVRDSPGHYGWR 327
>gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_A06_A029 5', mRNA sequence
Length = 815
Score = 210 bits (454), Expect = 8e-054
Identities = 81/109 (74%), Positives = 97/109 (88%)
Frame = +1 / +1
Query: 493 RDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
++G+ YVVTD SD+D VNP+ GTLR+AVI +EPLWIIF+ DMVI LKEEL+MNSFKTIDG
Sbjct: 1 QNGQYYVVTDSSDEDAVNPKPGTLRHAVIQDEPLWIIFQSDMVIRLKEELLMNSFKTIDG 180
Query: 673 RGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
RGA+VHIA+GACITIQY+TN+IIHG+ IH+C GNAMVR+SP HYGWR
Sbjct: 181 RGADVHIAHGACITIQYVTNIIIHGVSIHECVQAGNAMVRASPEHYGWR 327
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 203 bits (438), Expect = 1e-051
Identities = 78/94 (82%), Positives = 86/94 (91%)
Frame = +1 / -1
Query: 538 PVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITI 717
PVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG CIT+
Sbjct: 790 PVNPRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITV 611
Query: 718 QYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
QY+ +VIIHG+HIHDCKP GNAMVR SP+HYGWR
Sbjct: 610 QYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWR 509
>gb|AW226228.1|AW226228 ST79H03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST79H03, mRNA sequence
Length = 350
Score = 197 bits (424), Expect = 1e-049
Identities = 73/88 (82%), Positives = 82/88 (93%)
Frame = +1 / +2
Query: 556 GTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNV 735
GTLR+AVI EPLWI+F+RDMVITLKEELIMNSFKTIDGRG NVHIANG CIT+QY+TN+
Sbjct: 2 GTLRHAVIQTEPLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNI 181
Query: 736 IIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IIHG+H+HDCKP GNAMVR SP+HYGWR
Sbjct: 182 IIHGIHVHDCKPAGNAMVRDSPTHYGWR 265
>gb|BF778460.1|BF778460 NXSI_085_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_085_A08 5' similar to Arabidopsis thaliana
sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 294
Score = 195 bits (421), Expect = 3e-049
Identities = 75/96 (78%), Positives = 83/96 (86%)
Frame = +1 / +2
Query: 493 RDGKIYVVTDPSDDDPVNPRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDG 672
RDG+ YVVTDP DDDPVNPR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTID
Sbjct: 2 RDGRFYVVTDPRDDDPVNPRPGTLRHAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDX 181
Query: 673 RGANVHIANGACITIQYITNVIIHGLHIHDCKPTGN 780
NVHIANG CIT QY+TN+IIHG+HIHDC+P GN
Sbjct: 182 XXVNVHIANGPCITXQYVTNIIIHGIHIHDCRPAGN 289
>gb|BE582301.1|BE582301 NXCI_031_G04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_031_G04 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 330
Score = 191 bits (412), Expect = 5e-048
Identities = 73/91 (80%), Positives = 81/91 (89%)
Frame = +1 / +3
Query: 547 PRKGTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYI 726
PR GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHI NG CIT+QY+
Sbjct: 3 PRPGTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIXNGPCITVQYV 182
Query: 727 TNVIIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
+VIIHG+HIHDCKP GNAM R SP+HYGWR
Sbjct: 183 KHVIIHGIHIHDCKPGGNAMXRDSPTHYGWR 275
>gb|BE810207.1|BE810207 NXCI_061_D08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_061_D08 5' similar to Arabidopsis
thaliana sequence At4g24780 pectate lyase like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 377
Score = 190 bits (410), Expect = 9e-048
Identities = 73/88 (82%), Positives = 81/88 (92%)
Frame = +1 / +2
Query: 556 GTLRYAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNV 735
GTLR+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG CIT+QY+ +V
Sbjct: 2 GTLRHAVIQNEPLWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHV 181
Query: 736 IIHGLHIHDCKPTGNAMVRSSPSHYGWR 819
IIHG+HIHDCKP GNAMVR SP+HYGWR
Sbjct: 182 IIHGIHIHDCKPGGNAMVRDSPTHYGWR 265
>gb|CX651754.1|CX651754 COLD1_54_C07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_C07_A029 5', mRNA sequence
Length = 290
Score = 183 bits (394), Expect = 1e-045
Identities = 67/84 (79%), Positives = 77/84 (91%)
Frame = +1 / +2
Query: 568 YAVIHEEPLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHG 747
+AVI EPLWIIF+RDMVI LKEELIMNS+KTIDGRG NVHI NG C+T+QY+TN+IIHG
Sbjct: 2 HAVIQSEPLWIIFQRDMVIMLKEELIMNSYKTIDGRGVNVHIGNGPCVTVQYVTNIIIHG 181
Query: 748 LHIHDCKPTGNAMVRSSPSHYGWR 819
+HIHDC+P GNAMVRSSP+HYGWR
Sbjct: 182 IHIHDCRPAGNAMVRSSPTHYGWR 253
>gb|CX713220.1|CX713220 RTPQ1_7_F01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_F01_A032 5', mRNA sequence
Length = 719
Score = 183 bits (394), Expect = 1e-045
Identities = 66/85 (77%), Positives = 77/85 (90%)
Frame = +1 / +2
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR L YL+CGTGNPIDDCWRCD+DW NNR+RLADC IGFGRNAIGG++G+ YVVTDP+
Sbjct: 464 SSRRELSYLTCGTGNPIDDCWRCDADWENNRQRLADCAIGFGRNAIGGQNGRFYVVTDPN 643
Query: 529 DDDPVNPRKGTLRYAVIHEEPLWII 603
DD+PVNPR GTLR+AVI EPLWII
Sbjct: 644 DDNPVNPRPGTLRHAVIQNEPLWII 718
>gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_2_B02_A015 5', mRNA sequence
Length = 585
Score = 179 bits (386), Expect = 2e-044
Identities = 65/77 (84%), Positives = 73/77 (94%)
Frame = +1 / +1
Query: 589 PLWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCK 768
PLWI+F+RDMVITLKEELIMNSFKTIDGRG NVHIANG CIT+QY+TN+IIHG+H+HDCK
Sbjct: 1 PLWIVFERDMVITLKEELIMNSFKTIDGRGVNVHIANGPCITVQYVTNIIIHGIHVHDCK 180
Query: 769 PTGNAMVRSSPSHYGWR 819
P GNAMVR SP+HYGWR
Sbjct: 181 PAGNAMVRDSPTHYGWR 231
>gb|BX253211.1|BX253211 BX253211 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP079G09 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 563
Score = 178 bits (383), Expect = 5e-044
Identities = 66/80 (82%), Positives = 70/80 (87%)
Frame = +1 / +1
Query: 349 TARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPS 528
++RR LGY SCGTGNPIDDCWRCD DW NRKRLADCGIGFGRNAIGGRDG+ YVVTDP
Sbjct: 322 SSRRQLGYFSCGTGNPIDDCWRCDPDWERNRKRLADCGIGFGRNAIGGRDGRFYVVTDPR 501
Query: 529 DDDPVNPRKGTLRYAVIHEE 588
DDDPVNPR GTLR+AVI E
Sbjct: 502 DDDPVNPRPGTLRHAVIQSE 561
>gb|CO200002.1|CO200002 GEO2_4_G10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_4_G10_A032 5', mRNA sequence
Length = 805
Score = 178 bits (383), Expect = 5e-044
Identities = 66/90 (73%), Positives = 77/90 (85%)
Frame = +1 / +1
Query: 355 RRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSDD 534
RR L YLSCG+GNPIDDCWRCD +W NR+RLADC IGFGR AIGG++G+ YVVTD SD+
Sbjct: 535 RRKLSYLSCGSGNPIDDCWRCDPNWQKNRQRLADCAIGFGRGAIGGKNGQYYVVTDSSDE 714
Query: 535 DPVNPRKGTLRYAVIHEEPLWIIFKRDMVI 624
D VNP+ GTLR+AVI +EPLWIIF+ DMVI
Sbjct: 715 DAVNPKPGTLRHAVIQDEPLWIIFQSDMVI 804
>gb|CF385211.1|CF385211 RTDR1_2_C04.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_C04_A015 5', mRNA
sequence
Length = 769
Score = 174 bits (374), Expect = 8e-043
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +1 / +1
Query: 352 ARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSD 531
+RR L YLSCGTGNPIDDCWRCD +W NR+RLADC IGFGR+AIGG++G+ YVVTD SD
Sbjct: 514 SRRQLSYLSCGTGNPIDDCWRCDPNWQMNRQRLADCAIGFGRDAIGGKNGQYYVVTDSSD 693
Query: 532 DDPVNPRKGTLRYAVIHEEPLWIIF 606
+DPVNP GTLRYAVI ++PLWIIF
Sbjct: 694 NDPVNPTPGTLRYAVIQDDPLWIIF 768
>gb|DR177509.1|DR177509 RTMNUT1_5_F01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_F01_A029 5', mRNA sequence
Length = 671
Score = 171 bits (367), Expect = 8e-042
Identities = 64/82 (78%), Positives = 71/82 (86%)
Frame = +1 / +1
Query: 352 ARRNLGYLSCGTGNPIDDCWRCDSDWHNNRKRLADCGIGFGRNAIGGRDGKIYVVTDPSD 531
+RR L YLSCGTGNPIDDCWRC+ DW N+RKRLADC IGFGRNAIGGR+G+IYVVTD +D
Sbjct: 424 SRRELSYLSCGTGNPIDDCWRCNPDWENDRKRLADCAIGFGRNAIGGRNGRIYVVTDSND 603
Query: 532 DDPVNPRKGTLRYAVIHEEPLW 597
D VNPR GTLR+AVI EPLW
Sbjct: 604 YDAVNPRPGTLRHAVIQTEPLW 669
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 169 bits (364), Expect = 2e-041
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = +1 / +3
Query: 592 LWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKP 771
LWIIF+RDMVI LKEELIMNS+KTIDGRGANVHIANG CIT+QY+ +VIIHG+HIHDCKP
Sbjct: 3 LWIIFERDMVIQLKEELIMNSYKTIDGRGANVHIANGPCITVQYVKHVIIHGIHIHDCKP 182
Query: 772 TGNAMVRSSPSHYGWR 819
GNAMVR SP+HYGWR
Sbjct: 183 GGNAMVRDSPTHYGWR 230
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 356,480,142
Number of Sequences: 355925
Number of extensions: 4406802
Number of successful extensions: 37056
Number of sequences better than 1.0e-020: 102
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11861881900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)