TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 204 8e-052
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 196 2e-049
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 195 6e-049
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 193 2e-048
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 192 4e-048
gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stresse... 189 3e-047
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 188 5e-047
gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stresse... 188 7e-047
gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip libra... 188 9e-047
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 187 2e-046
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 187 2e-046
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 187 2e-046
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 187 2e-046
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 187 2e-046
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 187 2e-046
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 187 2e-046
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 187 2e-046
gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo li... 186 2e-046
gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo li... 186 2e-046
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 186 2e-046
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 186 2e-046
gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo li... 186 2e-046
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 186 2e-046
gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus pota... 185 4e-046
gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus p... 184 8e-046
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 184 1e-045
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 183 2e-045
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 183 2e-045
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 183 2e-045
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 183 2e-045
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 182 3e-045
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 182 3e-045
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 182 3e-045
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 182 4e-045
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 182 6e-045
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 180 2e-044
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 179 4e-044
gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch ... 178 5e-044
gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinu... 178 7e-044
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 177 1e-043
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 177 1e-043
gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch ... 177 1e-043
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 177 1e-043
gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control P... 176 3e-043
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 176 3e-043
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 176 3e-043
gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control P... 175 5e-043
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 175 5e-043
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 174 1e-042
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 173 2e-042
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 173 2e-042
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 173 2e-042
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 173 2e-042
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 173 2e-042
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 171 6e-042
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 171 6e-042
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 171 6e-042
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 171 6e-042
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 171 6e-042
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 171 6e-042
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 171 6e-042
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 171 6e-042
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 171 8e-042
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 171 8e-042
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 171 8e-042
gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch... 171 8e-042
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 171 1e-041
gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip libra... 170 1e-041
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 170 1e-041
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 170 2e-041
gb|CV035967.1|CV035967 RTNACL1_43_E10.g1_A029 Roots plus ad... 169 3e-041
gb|BX678005.1|BX678005 BX678005 RN Pinus pinaster cDNA clon... 169 3e-041
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 169 4e-041
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 169 4e-041
gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added... 168 5e-041
gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added... 168 5e-041
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 168 7e-041
gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clon... 168 7e-041
gb|DT633408.1|DT633408 EST1148339 Normalized pine embryo li... 146 9e-041
gb|DR686505.1|DR686505 EST1076583 Normalized pine embryo li... 146 9e-041
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 167 1e-040
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 167 1e-040
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 167 1e-040
gb|DR015810.1|DR015810 STRS1_5_F07.g1_A034 Shoot tip pitch ... 145 1e-040
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 167 1e-040
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 167 1e-040
gb|CO163969.1|CO163969 FLD1_45_A11.b1_A029 Root flooded Pin... 166 2e-040
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 166 2e-040
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 166 2e-040
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 166 3e-040
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 166 3e-040
gb|DR055413.1|DR055413 RTCA1_23_C03.g2_A029 Roots minus cal... 140 4e-040
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 165 5e-040
gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered lo... 165 5e-040
gb|CF395899.1|CF395899 RTDS2_19_G06.g1_A021 Drought-stresse... 165 6e-040
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 165 6e-040
gb|CF397637.1|CF397637 RTDS3_4_A07.g1_A022 Drought-stressed... 164 9e-040
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 164 9e-040
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 164 9e-040
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 164 9e-040
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 164 1e-039
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 163 2e-039
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 163 2e-039
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 163 2e-039
gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pin... 163 2e-039
gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pi... 163 2e-039
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 163 2e-039
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 163 2e-039
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 162 3e-039
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 162 3e-039
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 144 4e-039
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 144 4e-039
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 144 4e-039
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 161 6e-039
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 161 6e-039
gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iro... 161 8e-039
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 160 1e-038
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 160 1e-038
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 160 1e-038
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 160 1e-038
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 160 1e-038
gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulf... 160 1e-038
gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered lob... 122 5e-038
gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus pota... 158 5e-038
gb|CV033497.1|CV033497 RTNACL1_34_H05.g1_A029 Roots plus ad... 158 5e-038
gb|DR089238.1|DR089238 RTAL1_7_A05.g1_A029 Roots plus added... 158 5e-038
gb|DR384837.1|DR384837 RTHG1_4_H08.g1_A029 Roots plus added... 158 5e-038
gb|DR386238.1|DR386238 RTHG1_13_G03.g1_A029 Roots plus adde... 158 5e-038
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 158 7e-038
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 139 1e-037
gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus ad... 155 7e-037
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 154 9e-037
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 153 2e-036
gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potas... 153 2e-036
gb|CF396536.1|CF396536 RTDS2_22_H07.g1_A021 Drought-stresse... 141 3e-036
gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 ... 152 4e-036
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 139 7e-036
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 151 8e-036
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 150 2e-035
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 147 1e-034
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 146 3e-034
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 101 3e-034
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 144 1e-033
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 144 1e-033
gb|BF609979.1|BF609979 NXSI_053_C11_F NXSI (Nsf Xylem Side ... 142 3e-033
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 141 8e-033
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 138 4e-032
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 134 1e-031
gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pin... 137 1e-031
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 137 1e-031
gb|DT632905.1|DT632905 EST1147836 Normalized pine embryo li... 137 1e-031
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 135 4e-031
gb|CF393224.1|CF393224 RTDR3_17_B01.g1_A022 Loblolly pine r... 134 9e-031
gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Plani... 131 9e-030
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 130 1e-029
gb|DN448288.1|DN448288 EST944087 Sequencing ESTs from loblo... 112 4e-029
gb|DT625580.1|DT625580 EST1157504 Sequencing ESTs from lobl... 112 4e-029
gb|CN783759.1|CN783759 EST782450 Sequencing ESTs from loblo... 112 4e-029
gb|CV138259.1|CV138259 EST849468 Sequencing ESTs from loblo... 112 4e-029
gb|DT624539.1|DT624539 EST1158826 Sequencing ESTs from lobl... 112 4e-029
gb|CO173249.1|CO173249 NDL1_35_A08.b1_A029 Needles control ... 128 4e-029
gb|CV034962.1|CV034962 RTNACL1_12_F05.g1_A029 Roots plus ad... 125 4e-028
gb|CX714163.1|CX714163 RTPQ1_18_D03.g1_A032 Roots treated w... 125 4e-028
gb|DN458982.1|DN458982 EST954781 Sequencing ESTs from loblo... 113 5e-028
gb|DN464734.1|DN464734 EST960533 Sequencing ESTs from loblo... 113 5e-028
gb|CN783895.1|CN783895 EST782586 Sequencing ESTs from loblo... 113 5e-028
gb|DN455288.1|DN455288 EST951087 Sequencing ESTs from loblo... 113 5e-028
gb|CV135175.1|CV135175 EST846384 Sequencing ESTs from loblo... 113 5e-028
gb|DN463709.1|DN463709 EST959508 Sequencing ESTs from loblo... 113 5e-028
gb|DT626735.1|DT626735 EST1159811 Sequencing ESTs from lobl... 113 5e-028
gb|CO412408.1|CO412408 EST842793 Sequencing ESTs from loblo... 113 5e-028
gb|DN452317.1|DN452317 EST948116 Sequencing ESTs from loblo... 113 5e-028
gb|CV136199.1|CV136199 EST847408 Sequencing ESTs from loblo... 113 5e-028
gb|DN447482.1|DN447482 EST943281 Sequencing ESTs from loblo... 113 5e-028
gb|DN456471.1|DN456471 EST952270 Sequencing ESTs from loblo... 113 5e-028
gb|CO411548.1|CO411548 EST841933 Sequencing ESTs from loblo... 113 5e-028
gb|CO414624.1|CO414624 EST845009 Sequencing ESTs from loblo... 113 5e-028
gb|CX651169.1|CX651169 COLD1_50_D03.g1_A029 Root cold Pinus... 124 1e-027
gb|DR746217.1|DR746217 RTCU1_35_B06.g1_A029 Roots plus adde... 124 1e-027
gb|DR050127.1|DR050127 RTBOR1_21_A09.g1_A029 Roots plus add... 111 6e-027
gb|DR013838.1|DR013838 HEAT1_21_G09.g1_A029 Root at 37 C fo... 111 6e-027
gb|DR024798.1|DR024798 STRS1_67_B12.g1_A034 Shoot tip pitch... 111 6e-027
gb|DR089099.1|DR089099 RTAL1_6_B11.g1_A029 Roots plus added... 111 6e-027
gb|CO364221.1|CO364221 RTK1_14_A05.g1_A029 Roots minus pota... 111 6e-027
gb|CV139163.1|CV139163 EST850372 Sequencing ESTs from loblo... 111 6e-027
gb|DR024941.1|DR024941 STRS1_68_B11.g1_A034 Shoot tip pitch... 111 6e-027
gb|DT626587.1|DT626587 EST1158511 Sequencing ESTs from lobl... 111 6e-027
gb|CF669684.1|CF669684 RTCNT1_45_A07.g1_A029 Root control P... 111 6e-027
gb|CF386912.1|CF386912 RTDR1_9_D07.g1_A015 Loblolly pine ro... 111 6e-027
gb|CO173319.1|CO173319 NDL1_35_A08.g1_A029 Needles control ... 119 2e-026
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 75 3e-026
gb|CF392063.1|CF392063 RTDR3_12_C02.g1_A022 Loblolly pine r... 80 4e-026
gb|DR167893.1|DR167893 RTPHOS1_21_G02.g1_A029 Roots minus p... 118 4e-026
gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus ad... 116 2e-025
gb|DR096412.1|DR096412 STRR1_27_G02.g1_A033 Stem Response R... 116 2e-025
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 115 4e-025
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 115 4e-025
gb|DT627526.1|DT627526 EST1160602 Sequencing ESTs from lobl... 113 1e-024
gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo li... 95 4e-024
gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo li... 95 4e-024
gb|CF672556.1|CF672556 RTCNT1_64_A03.g1_A029 Root control P... 111 9e-024
gb|CO366361.1|CO366361 RTK1_27_A03.g1_A029 Roots minus pota... 111 9e-024
gb|DR098178.1|DR098178 STRR1_39_D04.g1_A033 Stem Response R... 111 9e-024
gb|BQ654804.1|BQ654804 NXRV085_H06_F NXRV (Nsf Xylem Root w... 110 2e-023
gb|CV033833.1|CV033833 RTNACL1_36_H06.g1_A029 Roots plus ad... 109 3e-023
gb|DR112102.1|DR112102 RTS1_25_H07.g1_A029 Roots minus sulf... 109 3e-023
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 108 4e-023
gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfu... 108 6e-023
gb|BQ701199.1|BQ701199 NXSI_023_G01_F NXSI (Nsf Xylem Side ... 103 1e-021
gb|CO165016.1|CO165016 FLD1_51_F09.g1_A029 Root flooded Pin... 102 3e-021
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 204 bits (441), Expect = 8e-052
Identities = 77/120 (64%), Positives = 94/120 (78%)
Frame = +3 / -2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K RKGLWSPEED+KL +I +GHGCWSA+P +AGLQR GKSCRLRWINYLRP LK G
Sbjct: 675 KQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYLRPDLKRG 496
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FSP+EE ++ LH+ LGN+WS+IA HLPGRTDNE+KN WNS +KK++ + P+T P
Sbjct: 495 TFSPQEENLIVELHSVLGNRWSQIATHLPGRTDNEIKNLWNSCIKKKLRQRGIDPNTHRP 316
Score = 114 bits (243), Expect = 6e-025
Identities = 57/114 (50%), Positives = 64/114 (56%)
Frame = -2 / +2
Query: 484 GAGVLGPWSLPSTLFLRYEFQ*FLTSLSVLPGKCRAILDHLLPSVAWRLITVSSSSGENM 305
G VLG + FL +EFQ FL SLSVLPG+C AI DHL P SS GEN+
Sbjct: 317 GLCVLGSMPRCLSFFLMHEFQRFLISLSVLPGRCVAI*DHLFPRTECSSTMRFSSCGENV 496
Query: 304 PCFSPGRR*LIHRSLQLLPFRWSPAFAGSALQQPXXXXXXXXXXXXXXSGDHRP 143
P F G +*LIHRSLQL P RW PA G+ALQ P SGDH+P
Sbjct: 497 PRFRSGLK*LIHRSLQLFPQRWRPACFGTALQHPWPYLVIWRTSFSSSSGDHKP 658
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 196 bits (423), Expect = 2e-049
Identities = 75/120 (62%), Positives = 90/120 (75%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K RKGLWSPEED+KL +I +GHGCWSA+P +AGLQR GKSCRLRWINYLRP LK G
Sbjct: 344 KQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYLRPDLKRG 523
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FSP+EE ++ LH+ LGN+WS+IA HLPGRTDNE+KN WNS +K + +T P
Sbjct: 524 TFSPQEENLIVELHSVLGNRWSQIATHLPGRTDNEIKNLWNSCIKXXXRXRGIDXNTHXP 703
Score = 111 bits (236), Expect = 5e-024
Identities = 56/114 (49%), Positives = 62/114 (54%)
Frame = -2 / -3
Query: 484 GAGVLGPWSLPSTLFLRYEFQ*FLTSLSVLPGKCRAILDHLLPSVAWRLITVSSSSGENM 305
G VL FL +EFQ FL SLSVLPG+C AI DHL P SS GEN+
Sbjct: 702 GXCVLXSMPRXLXXFLMHEFQRFLISLSVLPGRCVAI*DHLFPRTECSSTMRFSSCGENV 523
Query: 304 PCFSPGRR*LIHRSLQLLPFRWSPAFAGSALQQPXXXXXXXXXXXXXXSGDHRP 143
P F G +*LIHRSLQL P RW PA G+ALQ P SGDH+P
Sbjct: 522 PRFRSGLK*LIHRSLQLFPQRWRPACFGTALQHPWPYLVIWRTSFSSSSGDHKP 361
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 195 bits (420), Expect = 6e-049
Identities = 74/120 (61%), Positives = 90/120 (75%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K RKGLWSPEED+KL +I +GHGCWSA+P +AGLQR GKSCRLRWINYLRP LK G
Sbjct: 350 KQKLRKGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYLRPDLKRG 529
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FSP E ++ LH+ LGN+WS+IA HLPG TDNE+KN WNS +KK++ + +T P
Sbjct: 530 TFSPXXENLIVELHSVLGNRWSQIATHLPGXTDNEIKNLWNSCIKKKLRQRGXXXNTHXP 709
Score = 110 bits (234), Expect = 1e-023
Identities = 52/102 (50%), Positives = 59/102 (57%)
Frame = -2 / -2
Query: 448 TLFLRYEFQ*FLTSLSVLPGKCRAILDHLLPSVAWRLITVSSSSGENMPCFSPGRR*LIH 269
+ FL +EFQ FL SLSVLPG+C AI DHL P S GEN+P F G +*LIH
Sbjct: 672 SFFLMHEFQRFLISLSVLPGRCVAI*DHLFPRTECSSTMRFSXXGENVPRFRSGLK*LIH 493
Query: 268 RSLQLLPFRWSPAFAGSALQQPXXXXXXXXXXXXXXSGDHRP 143
RSLQL P RW PA G+ALQ P SGDH+P
Sbjct: 492 RSLQLFPQRWRPACFGTALQHPWPYLVIWRTSFSSSSGDHKP 367
>gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130B11, mRNA sequence
Length = 685
Score = 193 bits (417), Expect = 2e-048
Identities = 71/109 (65%), Positives = 90/109 (82%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
KP RKGLWSPEED KL +Y++ +G GCWS + +AGLQR GKSCRLRWINYLRP LK G
Sbjct: 86 KPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYLRPDLKRG 265
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVE 452
FSP+EE+ ++ LH+ LGN+WS+IA LPGRTDNE+KN+WNS +KK+++
Sbjct: 266 AFSPQEEQLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSCIKKKLK 412
>gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (MYB4) mRNA, complete cds
Length = 945
Score = 192 bits (414), Expect = 4e-048
Identities = 71/109 (65%), Positives = 89/109 (81%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
KP RKGLWSPEED KL +Y++ +G GCWS + +AGLQR GKSCRLRWINYLRP LK G
Sbjct: 40 KPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVAKQAGLQRCGKSCRLRWINYLRPDLKRG 219
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVE 452
FSP+EE ++ LH+ LGN+WS+IA LPGRTDNE+KN+WNS +KK+++
Sbjct: 220 AFSPQEEHWIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSCIKKKLK 366
>gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_H10_A015 5', mRNA sequence
Length = 723
Score = 189 bits (408), Expect = 3e-047
Identities = 70/107 (65%), Positives = 85/107 (79%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K ++G WSPEED KL YI HGHGCWS+L +AGLQR GKSCRLRW+NYLRPG+K G
Sbjct: 169 KKAVKRGFWSPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYLRPGIKRG 348
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKR 446
FS EEE ++SL A L N+W++IA+HLPGRTD E+KNYW+S LKK+
Sbjct: 349 NFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNYWHSCLKKK 489
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 188 bits (406), Expect = 5e-047
Identities = 73/117 (62%), Positives = 86/117 (73%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+PEEDQKL YI HGHG W ALP KAGL R GKSCRLRW NYLRP +K G
Sbjct: 123 KVGLKKGPWTPEEDQKLLAYIQEHGHGSWRALPQKAGLLRCGKSCRLRWTNYLRPDIKRG 302
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPST 476
F+P+EE+T++ LHA LGN+WS I LP RTDNE+KNYWN++LKKR+ P T
Sbjct: 303 KFNPQEEQTIIQLHALLGNRWSTITTQLPKRTDNEIKNYWNTHLKKRLVQMGIDPMT 473
>gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_C12_A021 5', mRNA sequence
Length = 607
Score = 188 bits (405), Expect = 7e-047
Identities = 69/107 (64%), Positives = 85/107 (79%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K ++G WSPEED KL YI HGHGCWS+L +AGLQR GKSCRLRW+NYLRPG+K G
Sbjct: 171 KKAVKRGFWSPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYLRPGIKRG 350
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKR 446
FS EEE ++SL A L N+W++IA+HLPGRTD E+KNYW++ LKK+
Sbjct: 351 NFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNYWHNCLKKK 491
>gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18F02, mRNA sequence
Length = 578
Score = 188 bits (404), Expect = 9e-047
Identities = 73/124 (58%), Positives = 90/124 (72%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG WS +ED+ L YI HG G W +LP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 41 KTHTNKGAWSKDEDEALVAYIQAHGEGSWRSLPKAAGLQRCGKSCRLRWINYLRPDLKRG 220
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FSPEE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + PST P
Sbjct: 221 NFSPEEDEIIIKLHSMLGNKWSLIASKLPGRTDNEIKNYWNTHIKRKMLERGLDPSTHLP 400
Query: 486 AASN 497
S+
Sbjct: 401 LMSD 412
>gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_D12_A022 5', mRNA
sequence
Length = 659
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +1
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 82 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 261
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 262 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 441
Query: 501 DDD 509
D
Sbjct: 442 RHD 450
>gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_D09_A015 5', mRNA sequence
Length = 667
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +2
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 53 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 232
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 233 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 412
Query: 501 DDD 509
D
Sbjct: 413 RHD 421
>gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A01_A029 5', mRNA sequence
Length = 812
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +1
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 1 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 180
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 181 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 360
Query: 501 DDD 509
D
Sbjct: 361 RHD 369
>gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 5', mRNA sequence
Length = 873
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +1
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 55 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 234
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 235 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 414
Query: 501 DDD 509
D
Sbjct: 415 RHD 423
>gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_A03_A029 3', mRNA sequence
Length = 790
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / -1
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 742 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 563
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 562 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 383
Query: 501 DDD 509
D
Sbjct: 382 RHD 374
>gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_A05_A034 5', mRNA sequence
Length = 752
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +3
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 60 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 239
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 240 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 419
Query: 501 DDD 509
D
Sbjct: 420 RHD 428
>gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_G08_A033 5', mRNA sequence
Length = 499
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +3
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 30 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 209
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 210 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 389
Query: 501 DDD 509
D
Sbjct: 390 RHD 398
>gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_11_H03_A029 5', mRNA sequence
Length = 669
Score = 187 bits (402), Expect = 2e-046
Identities = 73/123 (59%), Positives = 86/123 (69%)
Frame = +3 / +3
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 60 KGAWTKEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSED 239
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P NS
Sbjct: 240 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRNS 419
Query: 501 DDD 509
D
Sbjct: 420 RHD 428
>gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE88, mRNA sequence
Length = 846
Score = 186 bits (401), Expect = 2e-046
Identities = 69/107 (64%), Positives = 83/107 (77%)
Frame = +3 / -3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K ++G W PEED KL YI HGHGCWS+L +AGLQR GKSCRLRW+NYLRPG+K G
Sbjct: 826 KKAVKRGFWLPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYLRPGIKRG 647
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKR 446
FS EEE ++SL A L N+W++IA+HLPGRTD E+KNYW S LKK+
Sbjct: 646 NFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNYWRSCLKKK 506
>gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE88 3' end, mRNA sequence
Length = 779
Score = 186 bits (401), Expect = 2e-046
Identities = 69/107 (64%), Positives = 83/107 (77%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K ++G W PEED KL YI HGHGCWS+L +AGLQR GKSCRLRW+NYLRPG+K G
Sbjct: 205 KKAVKRGFWLPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYLRPGIKRG 384
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKR 446
FS EEE ++SL A L N+W++IA+HLPGRTD E+KNYW S LKK+
Sbjct: 385 NFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNYWRSCLKKK 525
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 186 bits (401), Expect = 2e-046
Identities = 70/126 (55%), Positives = 90/126 (71%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ EEDQKL +IL HGH CW A+P AGL R GKSCRLRW NYLRP LK G
Sbjct: 52 KVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 231
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
+ S EE+ ++ LH+ LGN+WS+IA HLPGRTDNE+KNYWN+++KK+++ P T P
Sbjct: 232 LLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVTHGP 411
Query: 486 AASNSD 503
++
Sbjct: 412 IIDQAE 429
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 186 bits (401), Expect = 2e-046
Identities = 70/126 (55%), Positives = 90/126 (71%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ EEDQKL +IL HGH CW A+P AGL R GKSCRLRW NYLRP LK G
Sbjct: 105 KVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 284
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
+ S EE+ ++ LH+ LGN+WS+IA HLPGRTDNE+KNYWN+++KK+++ P T P
Sbjct: 285 LLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVTRGP 464
Query: 486 AASNSD 503
++
Sbjct: 465 IIDQAE 482
>gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF723 3' end, mRNA sequence
Length = 795
Score = 186 bits (401), Expect = 2e-046
Identities = 69/107 (64%), Positives = 83/107 (77%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K ++G W PEED KL YI HGHGCWS+L +AGLQR GKSCRLRW+NYLRPG+K G
Sbjct: 213 KKAVKRGFWLPEEDMKLITYITTHGHGCWSSLSERAGLQRCGKSCRLRWMNYLRPGIKRG 392
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKR 446
FS EEE ++SL A L N+W++IA+HLPGRTD E+KNYW S LKK+
Sbjct: 393 NFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNYWRSCLKKK 533
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 186 bits (401), Expect = 2e-046
Identities = 70/126 (55%), Positives = 90/126 (71%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ EEDQKL +IL HGH CW A+P AGL R GKSCRLRW NYLRP LK G
Sbjct: 113 KVGLKKGPWTAEEDQKLISFILNHGHCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 292
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
+ S EE+ ++ LH+ LGN+WS+IA HLPGRTDNE+KNYWN+++KK+++ P T P
Sbjct: 293 LLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNYWNTHIKKKLKRMGIDPVTRGP 472
Query: 486 AASNSD 503
++
Sbjct: 473 IIDQAE 490
>gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B09_A029 3', mRNA sequence
Length = 904
Score = 185 bits (399), Expect = 4e-046
Identities = 74/120 (61%), Positives = 87/120 (72%)
Frame = +3 / -1
Query: 138 RKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSP 317
+KG W+PEEDQ L YI HGHG W ALP +AGL R GKSCRLRW NYLRP +K G FS
Sbjct: 883 KKGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSL 704
Query: 318 EEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASN 497
+EE+T++ LH LGN+WS IA HLPGRTDNE+KN WN++LKKR+ P T AP N
Sbjct: 703 KEEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVTHAPRGYN 524
>gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_H05_A029 5', mRNA sequence
Length = 806
Score = 184 bits (397), Expect = 8e-046
Identities = 74/119 (62%), Positives = 86/119 (72%)
Frame = +3 / +2
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+PEEDQ L YI HGHG W ALP +AGL R GKSCRLRW NYLRP +K G FS +
Sbjct: 2 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYLRPDIKRGNFSLK 181
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASN 497
EE+T++ LH LGN+WS IA HLPGRTDNE+KN WN++LKKR+ P T AP N
Sbjct: 182 EEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNVWNTHLKKRLLQIGVDPVTHAPRGYN 358
>gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_20_G08_A029 5', mRNA sequence
Length = 644
Score = 184 bits (396), Expect = 1e-045
Identities = 71/120 (59%), Positives = 85/120 (70%)
Frame = +3 / +1
Query: 141 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPE 320
KG W+ EED +L YI +HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS +
Sbjct: 118 KGAWTKEEDDRLIQYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGFFSED 297
Query: 321 EEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNS 500
E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P S
Sbjct: 298 EDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGIDPLTHRPFQKTS 477
>gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_E10_A015 5', mRNA
sequence
Length = 733
Score = 183 bits (394), Expect = 2e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 36 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 215
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 216 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 395
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 396 LGQPHNSNTTC 428
>gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_B07_A021 5', mRNA
sequence
Length = 712
Score = 183 bits (394), Expect = 2e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 78 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 257
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 258 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 437
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 438 LGQPHNSNTTC 470
>gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F10_A029 5', mRNA sequence
Length = 826
Score = 183 bits (394), Expect = 2e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 67 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 246
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 247 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 426
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 427 LGQPHNSNTTC 459
>gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_E05_A034 5', mRNA sequence
Length = 791
Score = 183 bits (394), Expect = 2e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 62 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 241
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 242 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 421
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 422 LGQPHNSNTTC 454
>gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clone RS58C06, mRNA sequence
Length = 605
Score = 182 bits (393), Expect = 3e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 24 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 203
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 204 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 383
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 384 LGQPHNSNTIC 416
>gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_E02_A029 5', mRNA sequence
Length = 708
Score = 182 bits (393), Expect = 3e-045
Identities = 69/120 (57%), Positives = 86/120 (71%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ EED+KL ++I LHGHGCW +P AGL R GKSCRLRW NYLRP LK G
Sbjct: 196 KVGLKKGPWTAEEDRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 375
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
+ S EE+ ++ LHA +GN+WSRIA LPGRTDNE+KNYWN+ +KK++ P T P
Sbjct: 376 LLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKP 555
>gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (MYB1) mRNA, complete cds
Length = 1023
Score = 182 bits (393), Expect = 3e-045
Identities = 69/120 (57%), Positives = 86/120 (71%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ EED+KL ++I LHGHGCW +P AGL R GKSCRLRW NYLRP LK G
Sbjct: 25 KVGLKKGPWTAEEDRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNYLRPDLKRG 204
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
+ S EE+ ++ LHA +GN+WSRIA LPGRTDNE+KNYWN+ +KK++ P T P
Sbjct: 205 LLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNYWNTRIKKKLRQMGIDPVTHKP 384
>gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_G05_A029 3', mRNA sequence
Length = 625
Score = 182 bits (392), Expect = 4e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / -3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 614 KSS*NKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 435
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 434 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 255
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 254 LGQPHNSNTTC 222
>gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_D06_A029 5', mRNA sequence
Length = 726
Score = 182 bits (391), Expect = 6e-045
Identities = 69/131 (52%), Positives = 90/131 (68%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 50 KAHTNKGGWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 229
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 230 NFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 409
Query: 486 AASNSDDDSHC 518
+ ++ C
Sbjct: 410 LGQPHNSNTTC 442
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 180 bits (387), Expect = 2e-044
Identities = 68/130 (52%), Positives = 89/130 (68%)
Frame = +3 / -3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP +K G
Sbjct: 801 KAHTNKGAWTKEEDDRLIAHIRAHGEGCWRSLPTAAGLLRCGKSCRLRWINYLRPDIKRG 622
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
FS EE+E ++ LH+ +GNKWS IA LPGRTDNE+KNYWNS++K+++ + P + P
Sbjct: 621 NFSSEEDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNYWNSHIKRKLVSRGFDPGSHRP 442
Query: 486 AASNSDDDSH 515
+S+
Sbjct: 441 LCPGPPHNSN 412
>gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 5', mRNA sequence
Length = 854
Score = 179 bits (385), Expect = 4e-044
Identities = 71/124 (57%), Positives = 85/124 (68%)
Frame = +3 / +1
Query: 138 RKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSP 317
++G EED +L YI HG GCW +LP AGL R GKSCRLRWINYLRP LK G FS
Sbjct: 1 KQGSLDQEEDDRLTQYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGGFSE 180
Query: 318 EEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASN 497
+E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P N
Sbjct: 181 DEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTRRPFQRN 360
Query: 498 SDDD 509
S D
Sbjct: 361 SRHD 372
>gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_D02_A034 3', mRNA sequence
Length = 909
Score = 178 bits (384), Expect = 5e-044
Identities = 69/128 (53%), Positives = 89/128 (69%)
Frame = +3 / +1
Query: 102 GCKACDKPKPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINY 281
GC + K + + ++G W+ ED+ L +YI HG G W LP KAGL+R+GKSCRLRW+NY
Sbjct: 34 GCGSPSKHEEHLKRGAWTASEDKILIEYIKTHGTGQWRGLPRKAGLERSGKSCRLRWLNY 213
Query: 282 LRPGLKHGMFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKD 461
LRP +K G SPEE+E ++ LH LGN+W+ IA LPGRTDNEVKNYWN+ L KRV+ +
Sbjct: 214 LRPDIKRGNISPEEDELLVRLHRLLGNRWTLIAGRLPGRTDNEVKNYWNTQLSKRVQRGE 393
Query: 462 QGPSTPAP 485
P P
Sbjct: 394 FEPKFQKP 417
>gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_D03_A029 5', mRNA sequence
Length = 693
Score = 178 bits (383), Expect = 7e-044
Identities = 67/108 (62%), Positives = 83/108 (76%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ +ED+ L DYI HGHG W ALP +AGL R GKSCRLRW NYLRP +K G
Sbjct: 66 KMGVKKGAWTLDEDKILVDYITKHGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRG 245
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRV 449
FSPEEE+ ++ LH +GN+WS IA +LPGRTDNE+KN WN++LKKR+
Sbjct: 246 NFSPEEEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNVWNTHLKKRL 389
>gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G09 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 177 bits (381), Expect = 1e-043
Identities = 67/120 (55%), Positives = 85/120 (70%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED +L +I HG GCW +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 117 KAHTNKGAWTKEEDDRLIAHIRTHGEGCWRSLPKAAGLMRCGKSCRLRWINYLRPDLKRG 296
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
S EE+E ++ LH+ LGNKWS IA LPGRTDNE+KNYWN+++K+++ + P + P
Sbjct: 297 NXSEEEDELIIKLHSLLGNKWSLIAXXLPGRTDNEIKNYWNTHIKRKLLNRGLDPQSHRP 476
>gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_A10_A029 3', mRNA sequence
Length = 655
Score = 177 bits (381), Expect = 1e-043
Identities = 70/121 (57%), Positives = 85/121 (70%)
Frame = +3 / -2
Query: 123 PKPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKH 302
P + KG W+ EED KL YI HG G W++LP AGL R GKSCRLRW+NYLRP LK
Sbjct: 630 PIGDRNKGAWTREEDDKLIQYIQTHGEGGWNSLPKAAGLLRCGKSCRLRWMNYLRPQLKR 451
Query: 303 GMFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPA 482
G FS +E++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T
Sbjct: 450 GNFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTHR 271
Query: 483 P 485
P
Sbjct: 270 P 268
>gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_D02_A034 5', mRNA sequence
Length = 547
Score = 177 bits (381), Expect = 1e-043
Identities = 67/117 (57%), Positives = 86/117 (73%)
Frame = +3 / +2
Query: 102 GCKACDKPKPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINY 281
GC + K + + ++G W+ ED+ L +YI HG G W LP KAGL+R+GKSCRLRW+NY
Sbjct: 182 GCGSPSKHEEHLKRGAWTASEDKILIEYIKTHGTGQWRGLPRKAGLERSGKSCRLRWLNY 361
Query: 282 LRPGLKHGMFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVE 452
LRP +K G SPEE+E ++ LH LGN+W+ IA LPGRTDNEVKNYWN+ L KRV+
Sbjct: 362 LRPDIKRGNISPEEDELLVRLHRLLGNRWTLIAGRLPGRTDNEVKNYWNTQLSKRVQ 532
>gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 5', mRNA sequence
Length = 729
Score = 177 bits (381), Expect = 1e-043
Identities = 70/120 (58%), Positives = 85/120 (70%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED++L +I HG G W +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 38 KAHTNKGAWTKEEDRRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 217
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
F+ EE+E ++ LHA LGNKWS IA L GRTDNE+KNYWNS++KK++ K P T P
Sbjct: 218 GFTEEEDELIIKLHAVLGNKWSLIAGRLAGRTDNEIKNYWNSHIKKKLLSKGLDPKTHCP 397
>gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D02_A029 5', mRNA sequence
Length = 557
Score = 176 bits (378), Expect = 3e-043
Identities = 66/108 (61%), Positives = 83/108 (76%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +KG W+ +ED+ L DYI HGHG W ALP +AGL R GKSCRLRW NYL+P +K G
Sbjct: 44 KMGVKKGPWTLDEDKILVDYITKHGHGNWRALPKQAGLLRCGKSCRLRWTNYLKPDIKRG 223
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRV 449
FSPEEE+ ++ LH +GN+WS IA +LPGRTDNE+KN WN++LKKR+
Sbjct: 224 NFSPEEEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNVWNTHLKKRL 367
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 176 bits (378), Expect = 3e-043
Identities = 65/104 (62%), Positives = 81/104 (77%)
Frame = +3 / +3
Query: 138 RKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSP 317
++G WS +ED L YI +HGHG W LP KAGL+R+GKSCRLRW+NYLRP +K G SP
Sbjct: 81 KRGTWSVQEDMILLQYIRIHGHGEWGRLPEKAGLKRSGKSCRLRWMNYLRPNIKRGDISP 260
Query: 318 EEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRV 449
+EEE ++ LH LGN+WS IA LPGRTDNE+KNYWNS+L K++
Sbjct: 261 DEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKL 392
>gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_16_B04_A029 5', mRNA sequence
Length = 748
Score = 176 bits (378), Expect = 3e-043
Identities = 66/102 (64%), Positives = 81/102 (79%)
Frame = +3 / +1
Query: 144 GLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPEE 323
G W+PEED+KL YI HG G W ++P AGLQR GKSCRLRW NYLRP +K G FS +E
Sbjct: 1 GPWTPEEDKKLLAYIEQHGLGNWRSVPVNAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQE 180
Query: 324 EETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRV 449
E+T++ LHA LGN+WS IA HLP RTDNE+KNYWN++L+KR+
Sbjct: 181 EQTIIQLHALLGNRWSTIATHLPKRTDNEIKNYWNTHLRKRL 306
>gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_30_H07_A029 5', mRNA sequence
Length = 667
Score = 175 bits (377), Expect = 5e-043
Identities = 69/126 (54%), Positives = 85/126 (67%)
Frame = +3 / +1
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K +G W+PEED L +YI HG G W LP KA L R GKSCRLRW+NYLRP +KHG
Sbjct: 91 KVGLNRGPWTPEEDLCLSNYIESHGEGGWRTLPKKARLLRCGKSCRLRWMNYLRPDVKHG 270
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
PEEE+ ++ LH LGN+WS IA +PGRTDNEVKNYWN++L K++ + P T P
Sbjct: 271 HILPEEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNYWNTHLSKKLISQGIDPRTHKP 450
Query: 486 AASNSD 503
A + D
Sbjct: 451 LAESED 468
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 175 bits (377), Expect = 5e-043
Identities = 66/115 (57%), Positives = 83/115 (72%)
Frame = +3 / +2
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ EED L +I HG GCW +LP AGL R GKSCRLRWINYLRP +K G
Sbjct: 74 KAHTNKGAWTKEEDDHLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDIKRG 253
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGP 470
FS EE+E ++ LH+ +GNKWS IA LPGRTDNE+KNYWNS++K+++ + P
Sbjct: 254 NFSSEEDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNYWNSHIKRKLVSRGFDP 418
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 174 bits (374), Expect = 1e-042
Identities = 66/120 (55%), Positives = 85/120 (70%)
Frame = +3 / +3
Query: 126 KPNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 305
K + KG W+ +ED +L +I HG G W +LP AGL R GKSCRLRWINYLRP LK G
Sbjct: 45 KAHTNKGAWTKQEDDRLIAHIRAHGEGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 224
Query: 306 MFSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAP 485
F+ EE+E ++ LH+ +GNKWS IA LPGRTDNE+KNYWN+++K+++ K P T P
Sbjct: 225 SFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSKGLDPQTHRP 404
>gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 5', mRNA sequence
Length = 689
Score = 173 bits (373), Expect = 2e-042
Identities = 69/122 (56%), Positives = 84/122 (68%)
Frame = +3 / +3
Query: 144 GLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSPEE 323
G W+ EED +L YI HG G W++LP AGL R GKSCRLRW+NYLRP LK G FS +E
Sbjct: 3 GAWTREEDDRLIQYIQAHGEGGWNSLPKAAGLLRCGKSCRLRWMNYLRPQLKRGNFSEDE 182
Query: 324 EETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKKRVEGKDQGPSTPAPAASNSD 503
++ ++ LHA LGNKWS IA LPGRTDNE+KNYWNS+LK+++ P T P S
Sbjct: 183 DDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYWNSHLKRKLISMGVDPLTHRPFQKISR 362
Query: 504 DD 509
D
Sbjct: 363 HD 368
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 231,490,335
Number of Sequences: 355925
Number of extensions: 3103795
Number of successful extensions: 53223
Number of sequences better than 1.0e-020: 236
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6784196250
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)