TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.1
(1136 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR097479.1|DR097479 STRR1_34_H05.g3_A033 Stem Response R... 312 4e-084
gb|DR117422.1|DR117422 RTMG1_6_H01.g1_A029 Roots minus magn... 304 4e-083
gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control ... 308 6e-083
gb|DR097773.1|DR097773 STRR1_36_H05.g3_A033 Stem Response R... 307 9e-083
gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered lo... 306 2e-082
gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2... 286 4e-082
gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered lo... 303 2e-081
gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism... 303 2e-081
gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magn... 303 2e-081
gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iro... 283 2e-081
gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control P... 302 3e-081
gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered lob... 286 8e-081
gb|DR168990.1|DR168990 RTPHOS1_29_E12.b1_A029 Roots minus p... 300 1e-080
gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered lo... 299 3e-080
gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered lo... 293 7e-079
gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late ... 293 1e-078
gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered lob... 292 2e-078
gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus ad... 292 2e-078
gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered lo... 292 3e-078
gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iro... 291 8e-078
gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine r... 272 2e-077
gb|CF478224.1|CF478224 RTWW3_19_G08.g1_A022 Well-watered lo... 283 1e-075
gb|AL751061.1|AL751061 AL751061 RS Pinus pinaster cDNA clon... 283 2e-075
gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered lo... 283 2e-075
gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 ... 265 2e-075
gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control P... 282 2e-075
gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciat... 281 6e-075
gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus ad... 280 2e-074
gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus ad... 275 5e-073
gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus mag... 257 8e-073
gb|DR069223.1|DR069223 RTDK1_5_E09.g1_A029 Roots, dark Pinu... 271 7e-072
gb|CO199504.1|CO199504 GEO2_1_E01.g1_A032 Root gravitropism... 266 2e-070
gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pin... 244 2e-069
gb|DR017596.1|DR017596 STRS1_17_G04.b1_A034 Shoot tip pitch... 263 2e-069
gb|DR100690.1|DR100690 STRR1_66_H02.g1_A033 Stem Response R... 260 1e-068
gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus adde... 242 3e-068
gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine ro... 242 3e-068
gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2... 256 2e-067
gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated wi... 256 2e-067
gb|DR097388.1|DR097388 STRR1_34_H05.b1_A033 Stem Response R... 254 6e-067
gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control P... 234 1e-066
gb|BX250981.1|BX250981 BX250981 Pinus pinaster differenciat... 253 2e-066
gb|CF473597.1|CF473597 RTWW2_3_C02.g1_A021 Well-watered lob... 252 4e-066
gb|CR354745.1|CR354745 CR354745 Pinus pinaster differenciat... 251 8e-066
gb|CO366790.1|CO366790 RTK1_30_C11.b1_A029 Roots minus pota... 248 7e-065
gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered lob... 247 1e-064
gb|DR023301.1|DR023301 STRS1_56_E08.g1_A034 Shoot tip pitch... 247 1e-064
gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Plani... 229 6e-064
gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered lob... 228 9e-064
gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control P... 201 1e-063
gb|BM367381.1|BM367381 NXLV_048_E03_F NXLV (Nsf Xylem Late ... 243 2e-063
gb|CX647323.1|CX647323 COLD1_15_G01.b1_A029 Root cold Pinus... 188 1e-062
gb|DR019720.1|DR019720 STRS1_32_A09.b1_A034 Shoot tip pitch... 209 7e-062
gb|CO174502.1|CO174502 NDL1_44_A03.g1_A029 Needles control ... 236 2e-061
gb|AL750621.1|AL750621 AL750621 RN Pinus pinaster cDNA clon... 235 4e-061
gb|CF665030.1|CF665030 RTCNT1_13_A07.g1_A029 Root control P... 235 4e-061
gb|DR023486.1|DR023486 STRS1_58_B05.b1_A034 Shoot tip pitch... 233 1e-060
gb|BX254536.1|BX254536 BX254536 Pinus pinaster differenciat... 233 2e-060
gb|CF401071.1|CF401071 RTWW1_9_G03.g1_A015 Well-watered lob... 228 6e-059
gb|BG040297.1|BG040297 NXSI_110_G02_F NXSI (Nsf Xylem Side ... 227 1e-058
gb|BQ633895.1|BQ633895 NXRV062_B09_F NXRV (Nsf Xylem Root w... 143 3e-058
gb|CO369134.1|CO369134 RTK1_45_E02.b1_A029 Roots minus pota... 226 3e-058
gb|AW754904.1|AW754904 PC08B10 Pine TriplEx pollen cone lib... 220 1e-056
gb|CO170986.1|CO170986 NDL1_18_F08.b1_A029 Needles control ... 220 2e-056
gb|BE761988.1|BE761988 NXCI_075_F07_F NXCI (Nsf Xylem Compr... 217 1e-055
gb|DR386187.1|DR386187 RTHG1_13_B03.g1_A029 Roots plus adde... 212 4e-054
gb|CF474497.1|CF474497 RTWW2_9_G09.b1_A021 Well-watered lob... 190 9e-054
gb|CF670903.1|CF670903 RTCNT1_53_H01.b1_A029 Root control P... 210 2e-053
gb|CO200240.1|CO200240 GEO2_6_F04.b1_A032 Root gravitropism... 210 2e-053
gb|BF049728.1|BF049728 NXCI_106_D04_F NXCI (Nsf Xylem Compr... 209 3e-053
gb|DR177419.1|DR177419 RTMNUT1_5_F01.b1_A029 Roots minus mi... 205 5e-052
gb|CF472577.1|CF472577 RTDS1_10_A06.g1_A015 Drought-stresse... 165 6e-051
gb|DR745814.1|DR745814 RTCU1_32_E09.g1_A029 Roots plus adde... 199 3e-050
gb|DR097687.1|DR097687 STRR1_36_H05.b1_A033 Stem Response R... 198 8e-050
gb|BQ198210.1|BQ198210 NXLV128_A12_F NXLV (Nsf Xylem Late w... 179 1e-047
gb|DR742971.1|DR742971 RTCU1_8_E01.g2_A029 Roots plus added... 190 2e-047
gb|BX250283.1|BX250283 BX250283 Pinus pinaster differenciat... 186 2e-046
gb|CO201671.1|CO201671 RTCNT2_7_G09.b1_A029 Root control 2 ... 186 3e-046
gb|CF401104.1|CF401104 RTWW1_10_B05.b1_A015 Well-watered lo... 100 2e-044
gb|CF401635.1|CF401635 RTWW1_14_C04.b1_A015 Well-watered lo... 177 2e-043
gb|AW985282.1|AW985282 NXNV_135_D01_F Nsf Xylem Normal wood... 176 3e-043
gb|BE662271.1|BE662271 ST84/ST84A04 Pine TriplEx shoot tip ... 175 5e-043
gb|CF402095.1|CF402095 RTWW1_20_F02.b1_A015 Well-watered lo... 175 6e-043
gb|CX651681.1|CX651681 COLD1_54_C07.b1_A029 Root cold Pinus... 173 2e-042
gb|CF385204.1|CF385204 RTDR1_2_G08.g1_A015 Loblolly pine ro... 95 8e-042
gb|BE241357.1|BE241357 NXNV_186_H07_F Nsf Xylem Normal wood... 166 2e-040
gb|AW064989.1|AW064989 ST38C07 Pine TriplEx shoot tip libra... 138 1e-039
gb|BX254296.1|BX254296 BX254296 Pinus pinaster differenciat... 159 4e-038
gb|CF474563.1|CF474563 RTWW2_9_G09.g1_A021 Well-watered lob... 130 1e-035
gb|BF220841.1|BF220841 NXCI_154_E09_F NXCI (Nsf Xylem Compr... 142 4e-033
gb|CF389343.1|CF389343 RTDR2_7_H11.b1_A021 Loblolly pine ro... 142 4e-033
gb|AW065014.1|AW065014 ST38F01 Pine TriplEx shoot tip libra... 140 1e-032
gb|CF401168.1|CF401168 RTWW1_10_B05.g1_A015 Well-watered lo... 93 1e-031
gb|BM158766.1|BM158766 NXLV_038_B05_F NXLV (Nsf Xylem Late ... 136 3e-031
gb|AW698214.1|AW698214 NXNV_070_A01_F Nsf Xylem Normal wood... 133 2e-030
gb|CD027822.1|CD027822 NXNV_070_A01 Nsf Xylem Normal wood V... 133 2e-030
gb|BQ291291.1|BQ291291 NXRV058_D01_F NXRV (Nsf Xylem Root w... 88 5e-030
gb|CF471824.1|CF471824 RTDS1_7_C12.b1_A015 Drought-stressed... 92 1e-029
gb|CF477967.1|CF477967 RTWW3_17_E11.b1_A022 Well-watered lo... 130 2e-029
gb|AW698057.1|AW698057 NXNV_078_C05_F Nsf Xylem Normal wood... 128 7e-029
gb|DR180809.1|DR180809 RTMNUT1_35_A12.b1_A029 Roots minus m... 128 7e-029
gb|AL751028.1|AL751028 AL751028 RS Pinus pinaster cDNA clon... 98 8e-029
gb|AW698213.1|AW698213 NXNV_070_A02_F Nsf Xylem Normal wood... 122 3e-027
gb|CD027823.1|CD027823 NXNV_070_A02 Nsf Xylem Normal wood V... 122 3e-027
gb|DR023697.1|DR023697 STRS1_59_A03.g1_A034 Shoot tip pitch... 94 2e-026
gb|DR048046.1|DR048046 RTBOR1_6_F07.b2_A029 Roots plus adde... 100 2e-026
gb|BG039718.1|BG039718 NXSI_103_C07_F NXSI (Nsf Xylem Side ... 103 2e-026
gb|BQ197748.1|BQ197748 NXLV115_E01_F NXLV (Nsf Xylem Late w... 116 2e-025
gb|BX680185.1|BX680185 BX680185 RS Pinus pinaster cDNA clon... 98 3e-025
gb|CD027993.1|CD027993 NXNV_144_B09_F Nsf Xylem Normal wood... 110 2e-023
gb|CF389587.1|CF389587 RTDR2_8_D07.b1_A021 Loblolly pine ro... 109 5e-023
gb|BQ701060.1|BQ701060 NXRV115_A06_F NXRV (Nsf Xylem Root w... 108 6e-023
gb|BF169643.1|BF169643 NXCI_125_F11_F NXCI (Nsf Xylem Compr... 107 1e-022
gb|BQ699768.1|BQ699768 NXRV128_F12_F NXRV (Nsf Xylem Root w... 72 4e-022
gb|CD021858.1|CD021858 NXNV_165_H04_F Nsf Xylem Normal wood... 101 7e-021
>gb|DR097479.1|DR097479 STRR1_34_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H05_A033 5', mRNA sequence
Length = 799
Score = 312 bits (675), Expect = 4e-084
Identities = 125/244 (51%), Positives = 163/244 (66%)
Frame = -3 / +2
Query: 1044 ITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSM 865
IT+QNV ++I+H + +RDS H+G R IW+DH+S+
Sbjct: 8 ITIQNVSHIIVHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFEGSHIWVDHVSL 187
Query: 864 SSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQ 685
S+CADGL+DA+ GSTAIT+SN HFT H+ VML G SD+ + D MQ+T+A+NHFG+GLVQ
Sbjct: 188 SNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTPDVNMQITIAYNHFGEGLVQ 367
Query: 684 RMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYS 505
RMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D+S KEVTKR
Sbjct: 368 RMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNSLAKEVTKRINKDAD 547
Query: 504 EYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVG 325
++K+W W+S+ D+ LNGA+F SG Y + ++A+ LT+ AG L+C+ G
Sbjct: 548 QWKDWNWRSKGDMMLNGAYFTPSGAGASSAYLKASSLEARPSTLVGPLTQNAGVLSCKKG 727
Query: 324 RKC* 313
+C*
Sbjct: 728 TRC* 739
Score = 161 bits (347), Expect = 6e-039
Identities = 102/241 (42%), Positives = 120/241 (49%)
Frame = +2 / -2
Query: 323 LPTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLY 502
+P Q S PA+ VS LA + Y PD +K APL S D Q +
Sbjct: 729 VPFLQESTPAFWVSGPTSVEGLASRLDAFKYAEDAPAPDGVKYAPLSIISPFDLQFQSFH 550
Query: 503 SLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGI 682
++ R VTSL L S A P L++VGF LPP+AY+SQ V*SLFTTWK P GI
Sbjct: 549 *SASLFIRFVTSLAKLLSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGI 370
Query: 683 RCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQL 862
CT P PKWL A V C+ S SL PN+IT VKW E V+AV+P AS PSAQL
Sbjct: 369 LCTRPSPKWLYAIVICMLTSGV*LSL*PNNITSLW*VKWLFEMVIAVDPMMASMRPSAQL 190
Query: 863 LMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTFCSV 1042
+ S Q+ L E PSPS P ES P S T W + TF V
Sbjct: 189 DKET*STQMWLPSKMEMPSPSHMVLHP*CVGESLTIAFPAGLQS*T*MPWTMM*LTF*MV 10
Query: 1043 I 1045
I
Sbjct: 9 I 7
>gb|DR117422.1|DR117422 RTMG1_6_H01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_H01_A029 5', mRNA sequence
Length = 826
Score = 304 bits (659), Expect(2) = 4e-083
Identities = 125/246 (50%), Positives = 158/246 (64%)
Frame = -3 / +2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V ++I+H + +RDS H+G R IW+DH
Sbjct: 41 GPCITVQYVSHIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDH 220
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
+S+S+CADGL+DA+ GSTAIT+SN +FT H+ VML G SD + D M+VT+A+NHFG+G
Sbjct: 221 VSLSNCADGLIDAIMGSTAITISNSYFTHHNEVMLLGHSDGYTPDVNMRVTIAYNHFGEG 400
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
L+QRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTKR Y
Sbjct: 401 LMQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPFAKEVTKRVYG 580
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNC 334
E+KNW W+S+ DL LNGA+F SG Y + + A+ LT+ AG L C
Sbjct: 581 DLDEWKNWNWRSKGDLMLNGAYFTPSGAAASSTYVKASSLPARSSSLVGPLTQNAGVLFC 760
Query: 333 RVGRKC 316
R G +C
Sbjct: 761 RKGVRC 778
Score = 180 bits (387), Expect = 2e-044
Identities = 108/243 (44%), Positives = 126/243 (51%)
Frame = +2 / -2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P Q S PA+ VS LA + +Y+ PD +K AP RS D QF +S
Sbjct: 768 PFLQKSTPAFWVSGPTRLEDLAGRLDAFTYVEDAAAPDGVKYAPFSIRSPFDLQFQFFHS 589
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
Y+R VTS + A+ LP L++VGF LPP+AY+SQ V*SLFTTWK P GIR
Sbjct: 588 SKSPYTRFVTSFAKGFAGAKNLLP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIR 409
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
C P PKWL A VT I S SL PN+IT VK E VMAVEP AS PSAQL
Sbjct: 408 CIRPSPKWLYAIVTRIFTSGV*PSL*PNNITSLW*VK*LFEMVMAVEPMMASMRPSAQLD 229
Query: 866 MDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTFCSVI 1045
+ WS Q+ L P E PSPS P ES P S T W I T+ +VI
Sbjct: 228 KETWSTQM*LPPNMEIPSPSQIVLHP*CVGESLTIAFPAGLQS*T*MPWMIM*LTY*TVI 49
Query: 1046 CAP 1054
P
Sbjct: 48 HGP 40
Score = 24.9 bits (48), Expect(2) = 4e-083
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3 / +2
Query: 1089 TIDGRGAQVHI 1057
TIDGRG VHI
Sbjct: 2 TIDGRGVNVHI 34
>gb|CO171062.1|CO171062 NDL1_18_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_18_F08_A029 5', mRNA sequence
Length = 802
Score = 308 bits (666), Expect = 6e-083
Identities = 125/241 (51%), Positives = 158/241 (65%)
Frame = -3 / +1
Query: 1035 QNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSC 856
Q V++VI++ + +RDS H+G R +IW+DH S+SSC
Sbjct: 1 QYVKHVIIYGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSC 180
Query: 855 ADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMP 676
DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+GLVQRMP
Sbjct: 181 TDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMP 360
Query: 675 RCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYK 496
RCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E + ++
Sbjct: 361 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWR 540
Query: 495 NWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC 316
W W+S+ DL LNGAFF QSG + Y + + A+ SLT YAG L CR G +C
Sbjct: 541 QWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC 720
Query: 315 * 313
*
Sbjct: 721 * 723
Score = 198 bits (427), Expect = 6e-050
Identities = 107/224 (47%), Positives = 125/224 (55%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 710 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 531
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 530 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 351
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 350 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 171
Query: 866 MDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
++WS QI P ETPSPSL P ES P SW
Sbjct: 170 KEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMAFPPGLQSW 39
>gb|DR097773.1|DR097773 STRR1_36_H05.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_36_H05_A033 5', mRNA sequence
Length = 798
Score = 307 bits (665), Expect = 9e-083
Identities = 123/244 (50%), Positives = 162/244 (66%)
Frame = -3 / +2
Query: 1044 ITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSM 865
IT+QNV ++I+H + +RDS H+G R IW+DH+S+
Sbjct: 2 ITIQNVSHIIVHGIHVHDCKPAGNAMVRDSPTHYGWRTMCDGDGISIFEGSHIWVDHVSL 181
Query: 864 SSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQ 685
S+CADGL+DA+ GSTAIT+S+ HFT H+ VML G SD+ + D MQ+T+A+NHFG+GLV
Sbjct: 182 SNCADGLIDAIMGSTAITISDNHFTHHNEVMLLGHSDSYTPDVNMQITIAYNHFGEGLVH 361
Query: 684 RMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYS 505
RMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D+S KEVTKR
Sbjct: 362 RMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNSLAKEVTKRINKDAD 541
Query: 504 EYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVG 325
++K+W W+S+ D+ LNGA+F SG Y + ++A+ LT+ AG L+C+ G
Sbjct: 542 QWKDWNWRSKGDMMLNGAYFTPSGAGASSAYLKASSLEARPSTLVGPLTQNAGVLSCKKG 721
Query: 324 RKC* 313
+C*
Sbjct: 722 TRC* 733
Score = 160 bits (345), Expect = 1e-038
Identities = 102/241 (42%), Positives = 120/241 (49%)
Frame = +2 / -1
Query: 323 LPTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLY 502
+P Q S PA+ VS LA + Y PD +K APL S D Q +
Sbjct: 723 VPFLQESTPAFWVSGPTSVEGLASRLDAFKYAEDAPAPDGVKYAPLSIISPFDLQFQSFH 544
Query: 503 SLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGI 682
++ R VTSL L S A P L++VGF LPP+AY+SQ V*SLFTTWK P GI
Sbjct: 543 *SASLFIRFVTSLAKLLSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGI 364
Query: 683 RCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQL 862
CT P PKWL A V C+ S SL PN+IT VKW E V+AV+P AS PSAQL
Sbjct: 363 LCTRPSPKWLYAIVICMLTSGV*LSL*PNNITSLW*VKWLSEMVIAVDPMMASMRPSAQL 184
Query: 863 LMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTFCSV 1042
+ S Q+ L E PSPS P ES P S T W + TF V
Sbjct: 183 DKET*STQMWLPSKMEMPSPSHMVLHP*CVGESLTIAFPAGLQS*T*MPWTMM*LTF*MV 4
Query: 1043 I 1045
I
Sbjct: 3 I 1
>gb|CF402753.1|CF402753 RTWW1_22_G07.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_22_G07_A015 5', mRNA sequence
Length = 807
Score = 306 bits (662), Expect = 2e-082
Identities = 131/247 (53%), Positives = 156/247 (63%)
Frame = -3 / +2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IW+DH
Sbjct: 17 GACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDH 196
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DA+ GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+G
Sbjct: 197 CSLSNCADGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEG 376
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQR+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTK E
Sbjct: 377 LVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKHEDA 556
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNC 334
S ++ W W+S DL LNGAFF QSG Y + + AK SLT AG L C
Sbjct: 557 PESAWRQWNWRSDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNAGVLAC 736
Query: 333 RVGRKC* 313
R G +C*
Sbjct: 737 RXGTRC* 757
Score = 188 bits (406), Expect = 5e-047
Identities = 96/188 (51%), Positives = 112/188 (59%)
Frame = +2 / -1
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D ++L S VTSL + AR RLPWL++VG LPP+
Sbjct: 636 PD*VKNAPFNIRSPSDLQFHCRHALSGASSCFVTSLEKRLTGARNRLPWLLIVGLALPPI 457
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+RCTSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 456 AYISQCV*SLFTTWK*PCRHLGMRCTSPSPKWLKATVTCMLTSCTYSSLWPRSMTLSWCV 277
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
E V+AV+P AS SPSAQ ++ S QI L P ETPSPSL P ES
Sbjct: 276 IKLFEIVIAVDPRIASMSPSAQFDKEQ*STQILLPPKMETPSPSLLVLHP*CPGESLTMA 97
Query: 974 PPCAAASW 997
P SW
Sbjct: 96 FPAGLQSW 73
>gb|CO362033.1|CO362033 NDL2_8_E07.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 5', mRNA sequence
Length = 753
Score = 286 bits (619), Expect(2) = 4e-082
Identities = 116/214 (54%), Positives = 145/214 (67%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V++VI+H + +RDS H+G R +IW+DH
Sbjct: 111 GPCITVQYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDH 290
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+G
Sbjct: 291 CSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEG 470
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E
Sbjct: 471 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDA 650
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKY 412
+ ++ W W+S+ DL LNGAFF QSG + Y
Sbjct: 651 PENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSY 752
Score = 190 bits (410), Expect(2) = 9e-051
Identities = 98/188 (52%), Positives = 112/188 (59%)
Frame = +2 / -3
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D L++ S LVTSL AR RLPWL++VGF LPP+
Sbjct: 730 PD*VKNAPFNIRSPSDLQFHCLHAFSGASSCLVTSLENALLGARNRLPWLLIVGFALPPI 551
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQ V*SLFTTWK P R G+RCTSP PKWLKA VTC+ S +SL P SIT SC
Sbjct: 550 AYISQ*V*SLFTTWKYPCRHLGMRCTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCD 371
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
LE V+AV+P AS SPS QL ++WS QI P ETPSPSL P ES
Sbjct: 370 I*LLEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMA 191
Query: 974 PPCAAASW 997
P SW
Sbjct: 190 FPPGLQSW 167
Score = 40.0 bits (81), Expect(2) = 4e-082
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / +3
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRGA VHI
Sbjct: 33 IQLKEELIMNSYKTIDGRGANVHI 104
Score = 30.9 bits (61), Expect(2) = 9e-051
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1 / -2
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
DV + ++ VD LV HD+LL ELD
Sbjct: 104 DVDIGASAVDCLVTVHDKLLFELD 33
>gb|CF401342.1|CF401342 RTWW1_11_C09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_C09_A015 5', mRNA sequence
Length = 779
Score = 303 bits (655), Expect = 2e-081
Identities = 121/218 (55%), Positives = 149/218 (68%)
Frame = -3 / +2
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+RDS H+G R +IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++
Sbjct: 35 VRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQ 214
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 215 HDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 394
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI SQGNRF A ++ KEVTK E + ++ W W+S+ DL LNGAFF QSG
Sbjct: 395 GSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAA 574
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+ Y + + A+ SLT YAG L CR G +C*
Sbjct: 575 SSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC* 688
Score = 198 bits (427), Expect = 6e-050
Identities = 107/224 (47%), Positives = 125/224 (55%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 675 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 496
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 495 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 316
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 315 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 136
Query: 866 MDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
++WS QI P ETPSPSL P ES P SW
Sbjct: 135 KEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMAFPPGLQSW 4
>gb|CO200608.1|CO200608 GEO2_8_A10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_8_A10_A032 5', mRNA sequence
Length = 865
Score = 303 bits (655), Expect = 2e-081
Identities = 121/218 (55%), Positives = 149/218 (68%)
Frame = -3 / -1
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+RDS H+G R +IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++
Sbjct: 853 VRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQ 674
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 673 HDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 494
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI SQGNRF A ++ KEVTK E + ++ W W+S+ DL LNGAFF QSG
Sbjct: 493 GSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAA 314
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+ Y + + A+ SLT YAG L CR G +C*
Sbjct: 313 SSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC* 200
Score = 195 bits (421), Expect = 4e-049
Identities = 101/201 (50%), Positives = 119/201 (59%)
Frame = +2 / +3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 213 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 392
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 393 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 572
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 573 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 752
Query: 866 MDRWSIQISLDPITETPSPSL 928
++WS QI P ETPSPSL
Sbjct: 753 KEQWSTQILFAPKMETPSPSL 815
>gb|DR117495.1|DR117495 RTMG1_7_G09.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_7_G09_A029 3', mRNA sequence
Length = 878
Score = 303 bits (655), Expect = 2e-081
Identities = 121/218 (55%), Positives = 149/218 (68%)
Frame = -3 / +2
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+RDS H+G R +IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++
Sbjct: 5 VRDSPTHYGWRTRSDEDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQ 184
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 185 HDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 364
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI SQGNRF A ++ KEVTK E + ++ W W+S+ DL LNGAFF QSG
Sbjct: 365 GSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAA 544
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+ Y + + A+ SLT YAG L CR G +C*
Sbjct: 545 SSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC* 658
Score = 192 bits (413), Expect = 5e-048
Identities = 100/201 (49%), Positives = 118/201 (58%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 645 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 466
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 465 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 286
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 285 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 106
Query: 866 MDRWSIQISLDPITETPSPSL 928
++WS QI P ETPS SL
Sbjct: 105 KEQWSTQILFAPKMETPSSSL 43
>gb|DR161157.1|DR161157 RTFE1_10_E01.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 3', mRNA sequence
Length = 799
Score = 283 bits (613), Expect(2) = 2e-081
Identities = 115/207 (55%), Positives = 143/207 (69%)
Frame = -3 / -1
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V++VI+H + +RDS H+G R +IW+DH
Sbjct: 628 GPCITVQYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDH 449
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+G
Sbjct: 448 CSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEG 269
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E
Sbjct: 268 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDA 89
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSG 433
+ ++ W W+S+ DL LNGAFF QSG
Sbjct: 88 PENAWRQWNWRSEGDLMLNGAFFTQSG 8
Score = 190 bits (410), Expect(2) = 9e-051
Identities = 98/188 (52%), Positives = 112/188 (59%)
Frame = +2 / +3
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D L++ S LVTSL AR RLPWL++VGF LPP+
Sbjct: 9 PD*VKNAPFNIRSPSDLQFHCLHAFSGASSCLVTSLENALLGARNRLPWLLIVGFALPPI 188
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQ V*SLFTTWK P R G+RCTSP PKWLKA VTC+ S +SL P SIT SC
Sbjct: 189 AYISQ*V*SLFTTWKYPCRHLGMRCTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCD 368
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
LE V+AV+P AS SPS QL ++WS QI P ETPSPSL P ES
Sbjct: 369 I*LLEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMA 548
Query: 974 PPCAAASW 997
P SW
Sbjct: 549 FPPGLQSW 572
Score = 40.0 bits (81), Expect(2) = 2e-081
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / -1
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRGA VHI
Sbjct: 706 IQLKEELIMNSYKTIDGRGANVHI 635
Score = 30.9 bits (61), Expect(2) = 9e-051
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1 / +2
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
DV + ++ VD LV HD+LL ELD
Sbjct: 635 DVDIGASAVDCLVTVHDKLLFELD 706
>gb|CF671517.1|CF671517 RTCNT1_57_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_D05_A029 5', mRNA sequence
Length = 792
Score = 302 bits (654), Expect = 3e-081
Identities = 129/244 (52%), Positives = 154/244 (63%)
Frame = -3 / +1
Query: 1044 ITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSM 865
IT+Q V ++I+H + +RDS H+G R +IW+DH S+
Sbjct: 1 ITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDHCSL 180
Query: 864 SSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQ 685
S+CADGL+DA+ GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+GLVQ
Sbjct: 181 SNCADGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEGLVQ 360
Query: 684 RMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYS 505
R+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTK E S
Sbjct: 361 RIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKHEDAPES 540
Query: 504 EYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVG 325
++ W W+S DL LNGAFF QSG Y + + AK SLT AG L CR G
Sbjct: 541 AWRQWNWRSDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNAGVLACRKG 720
Query: 324 RKC* 313
+C*
Sbjct: 721 TRC* 732
Score = 188 bits (406), Expect = 5e-047
Identities = 96/188 (51%), Positives = 112/188 (59%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D ++L S VTSL + AR RLPWL++VG LPP+
Sbjct: 611 PD*VKNAPFNIRSPSDLQFHCRHALSGASSCFVTSLEKRLTGARNRLPWLLIVGLALPPI 432
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+RCTSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 431 AYISQCV*SLFTTWK*PCRHLGMRCTSPSPKWLKATVTCMLTSCTYSSLWPRSMTLSWCV 252
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
E V+AV+P AS SPSAQ ++ S QI L P ETPSPSL P ES
Sbjct: 251 IKLFEIVIAVDPRIASMSPSAQFDKEQ*STQILLPPKMETPSPSLLVLHP*CPGESLTMA 72
Query: 974 PPCAAASW 997
P SW
Sbjct: 71 FPAGLQSW 48
>gb|CF400305.1|CF400305 RTWW1_4_F08.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_4_F08_A015 5', mRNA sequence
Length = 763
Score = 286 bits (619), Expect(2) = 8e-081
Identities = 122/231 (52%), Positives = 146/231 (63%)
Frame = -3 / +2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IW+DH
Sbjct: 71 GACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDH 250
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DA+ GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+G
Sbjct: 251 CSLSNCADGLIDAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEG 430
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQR+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTK E
Sbjct: 431 LVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKHEDA 610
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESL 361
S ++ W W+S DL LNGAFF QSG Y + + AK SL
Sbjct: 611 PESAWRQWNWRSDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSL 763
Score = 188 bits (406), Expect(2) = 4e-048
Identities = 96/188 (51%), Positives = 112/188 (59%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D ++L S VTSL + AR RLPWL++VG LPP+
Sbjct: 690 PD*VKNAPFNIRSPSDLQFHCRHALSGASSCFVTSLEKRLTGARNRLPWLLIVGLALPPI 511
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+RCTSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 510 AYISQCV*SLFTTWK*PCRHLGMRCTSPSPKWLKATVTCMLTSCTYSSLWPRSMTLSWCV 331
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
E V+AV+P AS SPSAQ ++ S QI L P ETPSPSL P ES
Sbjct: 330 IKLFEIVIAVDPRIASMSPSAQFDKEQ*STQILLPPKMETPSPSLLVLHP*CPGESLTMA 151
Query: 974 PPCAAASW 997
P SW
Sbjct: 150 FPAGLQSW 127
Score = 35.4 bits (71), Expect(2) = 8e-081
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -3 / +2
Query: 1116 QELIVSSDKTIDGRGAQVHI 1057
+ELI++S KTIDGRG VHI
Sbjct: 5 EELIMNSYKTIDGRGVNVHI 64
Score = 24.0 bits (46), Expect(2) = 4e-048
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1 / -1
Query: 1057 DVHLRSAPVDGLVAAHDEL 1113
+V + ++PVD LV HD+L
Sbjct: 64 NVDIYTSPVDCLVTIHDKL 8
>gb|DR168990.1|DR168990 RTPHOS1_29_E12.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_29_E12_A029 3', mRNA sequence
Length = 735
Score = 300 bits (649), Expect = 1e-080
Identities = 123/226 (54%), Positives = 149/226 (65%)
Frame = -3 / -1
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+R S H+G R +W+DH S+S+CADGL+DA+ STAIT+SN HFT
Sbjct: 717 VRSSPTHYGWRTMCDGDGVSIFGGSHVWVDHCSLSNCADGLIDAIMASTAITISNNHFTH 538
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G +DA + D+ MQVT+AFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 537 HDKVMLLGHNDAYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 358
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI S+GNR+ A D KEVTKR T + +KNW W+SQ DLFLNGA+F SG
Sbjct: 357 GSANPTINSEGNRYLAPVDRFAKEVTKRVETPHGRWKNWNWRSQGDLFLNGAYFINSGAG 178
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC*CVCSSRLQ 289
Y + + AK + LT AG L CR G +C* L+
Sbjct: 177 AASSYAKASSLGAKPASRVKFLTGNAGPLACRTGSRC*MALKLELR 40
Score = 178 bits (383), Expect = 7e-044
Identities = 98/200 (49%), Positives = 120/200 (60%)
Frame = +2 / +2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P RQ PA+ V + LA + + L + P+ +K APLRN+S D QF +
Sbjct: 77 PVRQARGPAFPVRNFTRDAGLAPRLEAFA*LEAAPAPELMKYAPLRNKSP*DLQFQFFHL 256
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
+ V +R VTSL S+ AR P L++VG LPP+AY+SQ V*SLFTT K P R G+R
Sbjct: 257 PWGVSTRFVTSLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMR 436
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CT P PKWLKA VTC+ LS ASL P S+T S VK E V+AVE AS SPSAQL
Sbjct: 437 CTRPSPKWLKAIVTCMFLSGA*ASLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPSAQLE 616
Query: 866 MDRWSIQISLDPITETPSPS 925
++ S Q L P ETPSPS
Sbjct: 617 SEQ*STQTWLPPKIETPSPS 676
>gb|CF401295.1|CF401295 RTWW1_11_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_11_C07_A015 5', mRNA sequence
Length = 755
Score = 299 bits (647), Expect = 3e-080
Identities = 127/240 (52%), Positives = 151/240 (62%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IW+DH
Sbjct: 36 GACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDH 215
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DA+ GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+G
Sbjct: 216 CSLSNCADGLIDAIMGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEG 395
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQR+PRCRHG+FHVVNNDY HW MYAIGGS NPTI SQGNRF A + KEVTK EY
Sbjct: 396 LVQRIPRCRHGYFHVVNNDYAHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKHEYA 575
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNC 334
S ++ W W+S DL LNGAFF QSG Y + + AK SLT AG L C
Sbjct: 576 PESAWRRWNWRSDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNAGVLAC 755
Score = 203 bits (437), Expect = 2e-051
Identities = 99/188 (52%), Positives = 114/188 (60%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D ++L YS VTSL + AR RLPWL++VGF LPP+
Sbjct: 655 PD*VKNAPFNIRSPSDLQFHLRHALSGAYSCFVTSLEKRLTGARNRLPWLLIVGFALPPI 476
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQC *SLFTTWK P R G+RCTSP PKWLKATVTC+ S +SL P SIT S V
Sbjct: 475 AYISQCA*SLFTTWK*PCRHLGMRCTSPSPKWLKATVTCMLTSCTYSSLWPRSITLSWCV 296
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
E V+AV+P AS SPSAQ ++WS QI L P ETPSPSL P ES
Sbjct: 295 IKLFEIVIAVDPMIASMSPSAQFDKEQWSTQILLPPKMETPSPSLLVLHP*CPGESLTMA 116
Query: 974 PPCAAASW 997
P SW
Sbjct: 115 FPAGLQSW 92
>gb|CF401713.1|CF401713 RTWW1_14_C04.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_14_C04_A015 5', mRNA sequence
Length = 733
Score = 293 bits (634), Expect(2) = 7e-079
Identities = 124/232 (53%), Positives = 148/232 (63%)
Frame = -3 / +2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IW+DH
Sbjct: 38 GACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIFGGSNIWVDH 217
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DA+ GSTAIT+SN T HD+VML G SD +D MQVTVAFNHFG+G
Sbjct: 218 CSLSNCADGLIDAILGSTAITISNNFMTHHDNVMLLGHSDEYMQDVNMQVTVAFNHFGEG 397
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQR+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D KEVTK E
Sbjct: 398 LVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVDRSSKEVTKHEDA 577
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLT 358
S ++ W W+S DL LNGAFF QSG Y + + AK SLT
Sbjct: 578 PESAWRQWNWRSDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLT 733
Score = 185 bits (399), Expect = 4e-046
Identities = 96/188 (51%), Positives = 112/188 (59%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D L++L S VTS S+ AR RLPWL++VG LPP+
Sbjct: 657 PD*VKNAPFNIRSPSDLQFHCLHALSGASSCFVTSFEERSTGARNRLPWLLIVGLALPPI 478
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+R TSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 477 AYISQCV*SLFTTWK*PCRHLGMRWTSPSPKWLKATVTCMLTSCIYSSL*PRSMTLSWCV 298
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
E V+AV+P AS SPSAQ ++ S QI L P ETPSPSL P ES
Sbjct: 297 IKLFEIVIAVDPRIASMSPSAQFDKEQ*STQILLPPKMETPSPSLLVLHP*CPGESLTMA 118
Query: 974 PPCAAASW 997
P SW
Sbjct: 117 FPAGLQSW 94
Score = 22.1 bits (42), Expect(2) = 7e-079
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / +2
Query: 1086 IDGRGAQVHI 1057
IDGRG VH+
Sbjct: 2 IDGRGVNVHV 31
>gb|BM133679.1|BM133679 NXLV_010_G02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_010_G02 5' similar to Arabidopsis thaliana
sequence At4g24780 pectate lyase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 807
Score = 293 bits (635), Expect = 1e-078
Identities = 117/216 (54%), Positives = 145/216 (67%)
Frame = -3 / +3
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+RDS H+G R +IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++
Sbjct: 66 VRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQ 245
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G SD ++D MQ T+AFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 246 HDKVMLLGHSDDYTQDVNMQATIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 425
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI SQGNRF A ++ KEVTK E + ++ W W+S+ DL LNGAFF QSG
Sbjct: 426 GSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAA 605
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRK 319
+ Y + + A+ SLT YAG L C G +
Sbjct: 606 SSSSYAKXSSLAARPSSLVSSLTTYAGVLQCXAGSR 713
Score = 196 bits (422), Expect = 3e-049
Identities = 106/224 (47%), Positives = 123/224 (54%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA L+ L PD +K AP RS D L++
Sbjct: 706 PAXHCRTPAYVVREETRDEGLAARLEXLA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 527
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 526 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 347
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA V C+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 346 CTSPSPKWLKAIVACMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 167
Query: 866 MDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
++WS QI P ETPSPSL P ES P SW
Sbjct: 166 KEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMAFPPGLQSW 35
>gb|CF400336.1|CF400336 RTWW1_4_C07.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_C07_A015 5', mRNA sequence
Length = 788
Score = 292 bits (633), Expect = 2e-078
Identities = 115/192 (59%), Positives = 140/192 (72%)
Frame = -3 / -3
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFN
Sbjct: 777 IWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFN 598
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
HFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVT
Sbjct: 597 HFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVT 418
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
K E + ++ W W+S+ DL LNGAFF QSG + Y + + A+ SLT YA
Sbjct: 417 KHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYA 238
Query: 348 GALNCRVGRKC* 313
G L CR G +C*
Sbjct: 237 GVLQCRAGSRC* 202
Score = 179 bits (386), Expect = 3e-044
Identities = 93/188 (49%), Positives = 111/188 (59%)
Frame = +2 / +2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 215 PALHCRTPAYVVREETRDEGLAARLDALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 394
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 395 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 574
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 575 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 754
Query: 866 MDRWSIQI 889
++WS QI
Sbjct: 755 KEQWSTQI 778
>gb|CV033562.1|CV033562 RTNACL1_35_F12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 3', mRNA sequence
Length = 812
Score = 292 bits (633), Expect = 2e-078
Identities = 115/192 (59%), Positives = 140/192 (72%)
Frame = -3 / +1
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IW+DH S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFN
Sbjct: 7 IWVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFN 186
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
HFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVT
Sbjct: 187 HFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVT 366
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
K E + ++ W W+S+ DL LNGAFF QSG + Y + + A+ SLT YA
Sbjct: 367 KHEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYA 546
Query: 348 GALNCRVGRKC* 313
G L CR G +C*
Sbjct: 547 GVLQCRAGSRC* 582
Score = 179 bits (386), Expect = 3e-044
Identities = 93/188 (49%), Positives = 111/188 (59%)
Frame = +2 / -1
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 569 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 390
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 389 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 210
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 209 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 30
Query: 866 MDRWSIQI 889
++WS QI
Sbjct: 29 KEQWSTQI 6
>gb|CF478684.1|CF478684 RTWW3_16_H09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_H09_A022 5', mRNA sequence
Length = 770
Score = 292 bits (632), Expect = 3e-078
Identities = 123/218 (56%), Positives = 144/218 (66%)
Frame = -3 / -3
Query: 966 IRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTR 787
+RDS H+G R IW+DH S+SSC GL+DA+ GSTAIT+SN T
Sbjct: 756 VRDSPDHYGWRTISDGDGVSIFGASHIWVDHCSLSSCTVGLIDAIMGSTAITISNNFMTH 577
Query: 786 HDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIG 607
HD VML G +D + D MQVTVAFNHFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIG
Sbjct: 576 HDKVMLLGHNDDYTPDVNMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIG 397
Query: 606 GSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQ 427
GS NPTI SQGNRF A + KEVTKREYT S +++W W+S+ DL LNGAFF SG
Sbjct: 396 GSANPTINSQGNRFLAPVNRFSKEVTKREYTPKSIWRHWNWRSEGDLMLNGAFFVPSGMD 217
Query: 426 NERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
Y + + A+ SLT AG L CR G +C*
Sbjct: 216 VSTSYSKASSLSARPSFLVTSLTGNAGVLTCRKGSRC* 103
Score = 198 bits (426), Expect = 8e-050
Identities = 103/201 (51%), Positives = 121/201 (60%)
Frame = +2 / +2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P + PA+ V + LA +L L PD K AP RS D Q L+
Sbjct: 116 PFLHVRTPAFPVREVTRNEGLAERLEALE*LVDTSIPDGTKNAPFNIRSPSDLQFQCLHM 295
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
L+ VYSR VTSL + AR RLPWL++VGF LPPMAY+SQCV*SLFTTWK P R GI
Sbjct: 296 LFGVYSRFVTSLEKRLTGARNRLPWLLIVGFALPPMAYISQCV*SLFTTWK*PCRHLGIL 475
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CT P PKWLKATVTC+ S +SL P S+T S V E V+AV+P AS SP+ QL
Sbjct: 476 CTRPSPKWLKATVTCMLTSGV*SSLWPRSMTLSWCVIKLFEMVIAVDPIMASMSPTVQLD 655
Query: 866 MDRWSIQISLDPITETPSPSL 928
++ S QI L P ETPSPSL
Sbjct: 656 KEQ*STQIWLAPKMETPSPSL 718
>gb|DR161241.1|DR161241 RTFE1_10_E01.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_E01_A029 5', mRNA sequence
Length = 791
Score = 291 bits (629), Expect = 8e-078
Identities = 114/191 (59%), Positives = 139/191 (72%)
Frame = -3 / -2
Query: 885 WIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNH 706
W+DH S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNH
Sbjct: 790 WVDHCSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNH 611
Query: 705 FGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTK 526
FG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK
Sbjct: 610 FGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTK 431
Query: 525 REYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAG 346
E + ++ W W+S+ DL LNGAFF QSG + Y + + A+ SLT YAG
Sbjct: 430 HEDAPENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAG 251
Query: 345 ALNCRVGRKC* 313
L CR G +C*
Sbjct: 250 VLQCRAGSRC* 218
Score = 177 bits (382), Expect = 1e-043
Identities = 92/187 (49%), Positives = 110/187 (58%)
Frame = +2 / +3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 231 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 410
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 411 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 590
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 591 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLD 770
Query: 866 MDRWSIQ 886
++WS Q
Sbjct: 771 KEQWSTQ 791
>gb|CF390665.1|CF390665 RTDR2_20_H04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_20_H04_A021 5', mRNA
sequence
Length = 704
Score = 272 bits (589), Expect(2) = 2e-077
Identities = 108/207 (52%), Positives = 141/207 (68%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V ++I+H + +RDS H+G R +W+DH
Sbjct: 84 GPCITVQYVSHIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHVWVDH 263
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
+S+++CADGL+DA+ STAIT+SN +FT H+ VML G SD+ + D M+VTVA+NHFG+G
Sbjct: 264 VSLANCADGLIDAIMASTAITISNSYFTNHNEVMLLGHSDSYTPDVNMRVTVAYNHFGEG 443
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
L+QRMPRC+HG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTKR Y
Sbjct: 444 LIQRMPRCKHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPANPSAKEVTKRIYG 623
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSG 433
++K W W+S+ D+ LNGA+F SG
Sbjct: 624 DVDQWKYWNWRSKGDMMLNGAYFVPSG 704
Score = 155 bits (334), Expect = 4e-037
Identities = 93/207 (44%), Positives = 109/207 (52%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD K APL S D Q+ + Y R VTS + A+ LP L++VGF LPP+
Sbjct: 703 PDGTKYAPLSIISPFDLQFQYFH*STSPYIRFVTSFAEGFAGAKNLLP*LLIVGFALPPI 524
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQ V*SLFTTWK P GIRC P PKWL ATVT I S SL PN+IT LV
Sbjct: 523 AYISQ*V*SLFTTWKYPCLHLGIRCIRPSPKWLYATVTRIFTSGV*LSL*PNNITSLWLV 344
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
K E V+AV+ AS PSAQL + WS Q L P + PSPS P ES
Sbjct: 343 K*LFEIVIAVDAMMASIRPSAQLAKETWSTQTWLPPKMDIPSPSQIVLHP*CVGESLTIA 164
Query: 974 PPCAAASWTCRLWRITLRTFCSVICAP 1054
P S T W + T+ +VI P
Sbjct: 163 FPAGLQS*T*MPWMMM*LTYWTVIHGP 83
Score = 38.2 bits (77), Expect(2) = 2e-077
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / +3
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRG VHI
Sbjct: 6 IQLKEELIMNSYKTIDGRGVNVHI 77
>gb|CF478224.1|CF478224 RTWW3_19_G08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_G08_A022 5', mRNA sequence
Length = 764
Score = 283 bits (613), Expect = 1e-075
Identities = 113/216 (52%), Positives = 146/216 (67%)
Frame = -3 / +1
Query: 960 DSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHD 781
DS H+G R +W+DH+S+++CADGL+DA+ STAIT+SN +FT H+
Sbjct: 1 DSPTHYGCRTICDGDGISIFGGSHVWVDHVSLANCADGLIDAIMASTAITISNSYFTNHN 180
Query: 780 HVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGS 601
VML G SD+ + D M+VTVA+NHFG+GL+QRMPRCRHG+FHVVNNDYTHW MYAIGGS
Sbjct: 181 EVMLLGHSDSYTPDVNMRVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGS 360
Query: 600 RNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNE 421
NPTI SQGNRF A + KEVTKR Y ++K W W+S+ D+ LNGA+F SG
Sbjct: 361 ANPTINSQGNRFLAPANPSAKEVTKRIYGHVDQWKYWNWRSKGDMMLNGAYFVPSGAGAS 540
Query: 420 RKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
Y + ++A+ SLT+ AG L C+ G +C*
Sbjct: 541 SAYQKASSMEARPSSLVGSLTQNAGVLFCKKGARC* 648
Score = 166 bits (356), Expect = 4e-040
Identities = 94/200 (47%), Positives = 108/200 (54%)
Frame = +2 / -1
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P Q S PA+ V D LA M + Y PD K AP S D Q+ +
Sbjct: 635 PFLQKSTPAF*VRDPTRLEGLASMLDAF*YAEDAPAPDGTKYAPFSIISPFDLQFQYFH* 456
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
C Y R VTS + A+ LP L+MVGF LPP+AY+SQ V*SLFTTWK P GIR
Sbjct: 455 STCPYIRFVTSFAEGFAGAKNLLP*LLMVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIR 276
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
C P PKWL ATVT I S SL PN+IT LVK E V+AV+ AS PSAQL
Sbjct: 275 CIRPSPKWLYATVTRIFTSGV*LSL*PNNITSLWLVK*LFEIVIAVDAMMASIRPSAQLA 96
Query: 866 MDRWSIQISLDPITETPSPS 925
+ WS Q L P + PSPS
Sbjct: 95 NETWSTQTWLPPKMDIPSPS 36
>gb|AL751061.1|AL751061 AL751061 RS Pinus pinaster cDNA clone RS03F05 similar to PECTATE
LYASE, mRNA sequence
Length = 607
Score = 283 bits (612), Expect = 2e-075
Identities = 113/201 (56%), Positives = 140/201 (69%)
Frame = -3 / +2
Query: 1035 QNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSC 856
Q V N+I+H + +RDS H+G R IW+DH+S+S+C
Sbjct: 2 QYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDHVSLSNC 181
Query: 855 ADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMP 676
ADGL+DA+ GSTAIT+SN +FT H+ VML G SD+ + D M+VT+A+NHFG+GLVQRMP
Sbjct: 182 ADGLIDAIMGSTAITISNSYFTHHNEVMLMGHSDSYTPDVNMRVTIAYNHFGEGLVQRMP 361
Query: 675 RCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYK 496
RCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTKR Y +E+K
Sbjct: 362 RCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPANPFAKEVTKRVYGDVNEWK 541
Query: 495 NWVWKSQDDLFLNGAFFNQSG 433
NW W+S+ DL LNGA+F SG
Sbjct: 542 NWNWRSKGDLMLNGAYFTPSG 604
Score = 155 bits (334), Expect = 4e-037
Identities = 91/200 (45%), Positives = 106/200 (53%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D QF +S Y+R VTS + A P L++VGF LPP+
Sbjct: 603 PDGVKYAPFSIRSPFDLQFQFFHSFTSPYTRFVTSFAKGFAGAENLFP*LLIVGFALPPI 424
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQ V*SL TTWK P GIRCT P PKWL A VT I S SL P +IT V
Sbjct: 423 AYISQ*V*SLLTTWKYPCLHLGIRCTRPSPKWLYAIVTRIFTSGV*LSL*PINITSLW*V 244
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
K E V+AV+P AS PSAQL + WS Q+ L P E PSPS P ES
Sbjct: 243 K*LFEIVIAVDPMMASMRPSAQLDKETWSTQM*LPPNMEIPSPSQMVLHP*CVGESLTMA 64
Query: 974 PPCAAASWTCRLWRITLRTF 1033
P S T W + L T+
Sbjct: 63 FPAGLQS*T*MPWMMMLVTY 4
>gb|CF402186.1|CF402186 RTWW1_20_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_20_F02_A015 5', mRNA sequence
Length = 785
Score = 283 bits (612), Expect = 2e-075
Identities = 120/216 (55%), Positives = 141/216 (65%)
Frame = -3 / +2
Query: 960 DSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHD 781
DS H+G R +IWIDH S+S+C+DGL+DAV GSTAIT+SN T HD
Sbjct: 26 DSPGHYGWRTRSDGDGVSIVGGSNIWIDHCSLSNCSDGLIDAVLGSTAITISNNFMTHHD 205
Query: 780 HVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGS 601
VML G SD +D +MQVTVAFNHFG+GLVQR+PRCRHG+FHVVNNDYTHW MYAIGGS
Sbjct: 206 KVMLLGHSDEYVQDAKMQVTVAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGS 385
Query: 600 RNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNE 421
NPTI SQGNRF A + KEVTK E S ++ W W+S DL LNGAFF Q+G
Sbjct: 386 ANPTINSQGNRFLAPVNRFSKEVTKHEDAPESAWRRWNWRSDGDLLLNGAFFTQTGAAAS 565
Query: 420 RKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
Y + + A S+T AG L CR G +C*
Sbjct: 566 SSYAKASSLAAMPSSLVVSITGNAGVLACRKGSRC* 673
Score = 211 bits (455), Expect = 8e-054
Identities = 104/201 (51%), Positives = 124/201 (61%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P R PA+ V ++ +A + + L P +KKAP NRS D L++
Sbjct: 660 PFRHARTPAFPVMETTREDGIAARLEAFA*LDDAAAPV*VKKAPFNNRSPSDLQFHRLHA 481
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
L S VTSL + AR RLPWL++VGF LPP+AY+SQCV*SLFTTWK P R G+R
Sbjct: 480 LSGASSCFVTSLEKRLTGARNRLPWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMR 301
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLL 865
CTSP PKWLKATVTCI S +SL P S+T S V E V+AVEP TAS SPS Q
Sbjct: 300 CTSPSPKWLKATVTCILASCTYSSLWPRSMTLSWCVIKLFEIVIAVEPRTASMSPSEQFD 121
Query: 866 MDRWSIQISLDPITETPSPSL 928
++WSIQI L P ETPSPSL
Sbjct: 120 KEQWSIQILLPPTMETPSPSL 58
>gb|CO201745.1|CO201745 RTCNT2_7_G09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_G09_A029 5', mRNA sequence
Length = 837
Score = 265 bits (574), Expect(2) = 2e-075
Identities = 109/191 (57%), Positives = 129/191 (67%)
Frame = -3 / +2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V ++I+H + +RDS H+G R +IW+DH
Sbjct: 263 GPCITVQYVSHIIIHGIHIHDCKPAGNAMVRDSPTHYGWRTISDGDGVSIFGASNIWVDH 442
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+SSC DGL+DA+ GSTAIT+SN T HD VML G +D ++D MQVTVAFNHFG+G
Sbjct: 443 CSLSSCTDGLIDAIRGSTAITISNNFMTHHDKVMLLGHNDDYTQDVNMQVTVAFNHFGEG 622
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D KEVTKREYT
Sbjct: 623 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDYHSSKEVTKREYT 802
Query: 513 QYSEYKNWVWK 481
S +K W W+
Sbjct: 803 AESVWKQWNWR 835
Score = 187 bits (402), Expect(2) = 5e-049
Identities = 96/173 (55%), Positives = 108/173 (62%)
Frame = +2 / -1
Query: 479 DFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWK 658
D ++L VYSR VTSL S AR RLPWL++VGF LPPMAY+SQ V*SLFTT K
Sbjct: 837 DLQFHCFHTLSAVYSRFVTSLEE**SGARNRLPWLLIVGFALPPMAYISQWV*SLFTT*K 658
Query: 659 KP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTA 838
P R G+RCTSP PKWLKATVTC+ S +SL PNSIT S V E V+AV+P A
Sbjct: 657 *PCRHLGMRCTSPSPKWLKATVTCMLTSWV*SSLWPNSITLSWWVIKLFEIVIAVDPLMA 478
Query: 839 STSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
S SPS QL ++WS QI L P ETPSPSL P ES P SW
Sbjct: 477 SMSPSVQLDKEQWSTQILLAPKMETPSPSLIVLHP*CVGESLTMAFPAGLQSW 319
Score = 38.2 bits (77), Expect(2) = 2e-075
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / +2
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRG VHI
Sbjct: 185 IQLKEELIMNSYKTIDGRGVNVHI 256
Score = 28.6 bits (56), Expect(2) = 5e-049
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1 / -3
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
+V + ++ VD LVA HD+L ELD
Sbjct: 256 NVDIDASAVDCLVAVHDKLFFELD 185
>gb|CF670977.1|CF670977 RTCNT1_53_H01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_53_H01_A029 5', mRNA sequence
Length = 640
Score = 282 bits (611), Expect = 2e-075
Identities = 118/192 (61%), Positives = 136/192 (70%)
Frame = -3 / +2
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IW+DH S+SSC DGL+DA+ GSTAIT+SN T HD VML G +D + D MQVTVAFN
Sbjct: 5 IWVDHCSLSSCTDGLIDAIMGSTAITISNNFMTHHDKVMLLGHNDDYTPDVNMQVTVAFN 184
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
HFG+GLVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVT
Sbjct: 185 HFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVT 364
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
KREYT S +++W W+S+ DL LNGAFF SG Y + A+ SLT A
Sbjct: 365 KREYTPKSIWRHWNWRSKGDLMLNGAFFVPSGMDVSTSYSKASSPSARPSFLVTSLTGNA 544
Query: 348 GALNCRVGRKC* 313
G L CR G +C*
Sbjct: 545 GVLTCRKGSRC* 580
Score = 182 bits (391), Expect = 5e-045
Identities = 88/152 (57%), Positives = 101/152 (66%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD K AP RS D Q L+ L+ VYSR VTSL + AR RLPWL++VGF LPPM
Sbjct: 459 PDGTKNAPFNIRSPFDLQFQCLHMLFGVYSRFVTSLEKRLTGARNRLPWLLIVGFALPPM 280
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R GI CTSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 279 AYISQCV*SLFTTWK*PCRHLGILCTSPSPKWLKATVTCMLTSGV*SSLWPRSMTLSWCV 100
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQI 889
E V+AV+P AS SPS QL ++ S QI
Sbjct: 99 IKLFEMVIAVDPIMASMSPSVQLDKEQ*STQI 4
>gb|BX255698.1|BX255698 BX255698 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP008G04 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 667
Score = 281 bits (608), Expect = 6e-075
Identities = 113/215 (52%), Positives = 144/215 (66%)
Frame = -3 / +1
Query: 1029 VRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDHLSMSSCAD 850
V++VI+H + +RDS H+G R +IW+DH S+SSC D
Sbjct: 4 VKHVIIHGIHIHDCKPGGNTMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDHCSLSSCTD 183
Query: 849 GLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRC 670
GL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRC
Sbjct: 184 GLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRC 363
Query: 669 RHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNW 490
RHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E + ++ W
Sbjct: 364 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQW 543
Query: 489 VWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAK 385
W+S+ DL LNGAFF QSG + Y + + A+
Sbjct: 544 NWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAAR 648
Score = 190 bits (409), Expect = 2e-047
Identities = 98/188 (52%), Positives = 112/188 (59%)
Frame = +2 / -3
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D L++ S LVTSL AR RLPWL++VGF LPP+
Sbjct: 599 PD*VKNAPFNIRSPSDLQFHCLHAFSGASSCLVTSLENALLGARNRLPWLLIVGFALPPI 420
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQ V*SLFTTWK P R G+RCTSP PKWLKA VTC+ S +SL P SIT SC
Sbjct: 419 AYISQ*V*SLFTTWKYPCRHLGMRCTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCD 240
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAP 973
LE V+AV+P AS SPS QL ++WS QI P ETPSPSL P ES
Sbjct: 239 I*LLEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPSPSLLVLHP*CVGESLTMV 60
Query: 974 PPCAAASW 997
P SW
Sbjct: 59 FPPGLQSW 36
>gb|CV033540.1|CV033540 RTNACL1_35_D11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_D11_A029 3', mRNA sequence
Length = 876
Score = 280 bits (605), Expect = 2e-074
Identities = 118/192 (61%), Positives = 134/192 (69%)
Frame = -3 / +3
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IWIDH S+S+CADGL+DAV GSTAIT+SN T HD VML G SD +D MQVTVAFN
Sbjct: 12 IWIDHCSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFN 191
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
FG+GLVQR+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVT
Sbjct: 192 RFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFHAPVNPFSKEVT 371
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
K E S ++ W W+S DL LNGAFF QSG Y + + AK SLTR +
Sbjct: 372 KHEDALESVWREWNWRSNGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTRNS 551
Query: 348 GALNCRVGRKC* 313
G L CR G +C*
Sbjct: 552 GVLVCRKGSRC* 587
Score = 173 bits (372), Expect = 2e-042
Identities = 85/154 (55%), Positives = 101/154 (65%)
Frame = +2 / -3
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D L++L S VTSL + A RLPWL++VGF LPP+
Sbjct: 466 PD*VKNAPFSIRSPFDLQFHSLHTLSSASSCFVTSLEKGLTGAWNRLPWLLIVGFALPPI 287
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+RCTSP PK LKATVTC+ S +SL P S+T S V
Sbjct: 286 AYISQCV*SLFTTWK*PCRHLGMRCTSPSPKRLKATVTCMLTSCIYSSL*PRSMTLSWCV 107
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISL 895
E V+AV+P TAS SPSAQ ++WSIQI L
Sbjct: 106 IKLFEIVIAVDPRTASMSPSAQFDKEQWSIQILL 5
>gb|CV033650.1|CV033650 RTNACL1_35_F12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_35_F12_A029 5', mRNA sequence
Length = 775
Score = 275 bits (594), Expect = 5e-073
Identities = 110/187 (58%), Positives = 134/187 (71%)
Frame = -3 / +2
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
L + SC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+G
Sbjct: 2 LLLVSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEG 181
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E
Sbjct: 182 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDA 361
Query: 513 QYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNC 334
+ ++ W W+S+ DL LNGAFF QSG + Y + + A+ SLT YAG L C
Sbjct: 362 PENAWRQWNWRSEGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAGVLQC 541
Query: 333 RVGRKC* 313
R G +C*
Sbjct: 542 RAGSRC* 562
Score = 170 bits (365), Expect = 2e-041
Identities = 89/179 (49%), Positives = 105/179 (58%)
Frame = +2 / -2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 549 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 370
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 369 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 190
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQL 862
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL
Sbjct: 189 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQL 13
>gb|DR120859.1|DR120859 RTMG1_32_A06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_A06_A029 5', mRNA sequence
Length = 815
Score = 257 bits (555), Expect(2) = 8e-073
Identities = 104/202 (51%), Positives = 132/202 (65%)
Frame = -3 / +1
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V N+I+H + +R S H+G R IWIDH
Sbjct: 208 GACITIQYVTNIIIHGVSIHECVQAGNAMVRASPEHYGWRTVSDGDGISIFGGRYIWIDH 387
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+C DGL+DA+ GSTAIT+SN +F+ HD VML G +D+ + D MQ+T+AFN+FG+G
Sbjct: 388 CSLSNCKDGLIDAIMGSTAITISNNYFSHHDMVMLLGHADSYTNDAIMQITIAFNYFGEG 567
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
L+QRMPRCRHG+FHVVNN Y HW MYAIGGS PTI S+GN F A D++ KEVTKR
Sbjct: 568 LIQRMPRCRHGYFHVVNNQYAHWEMYAIGGSAKPTINSEGNIFIAPDNANAKEVTKRLDV 747
Query: 513 QYSEYKNWVWKSQDDLFLNGAF 448
E+ W W+S DL LNGA+
Sbjct: 748 VGEEWTQWNWRSAGDLMLNGAY 813
Score = 139 bits (298), Expect = 4e-032
Identities = 89/203 (43%), Positives = 103/203 (50%)
Frame = +2 / -1
Query: 446 KKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMS 625
K APL RS D ++S S LVTSL L S A LP L+MVG LPP+AY+S
Sbjct: 815 K*APLSIRSPADLQFHCVHSSPTTSSLLVTSLALALSGAMNMLPSLLMVGLALPPIAYIS 636
Query: 626 QCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPL 805
QC LFTT K P GI SP PK LKA V CI S S P S+T S K
Sbjct: 635 QCAYWLFTT*KYPCLHLGIL*MSPSPK*LKAMVICIIASFV*LSACPRSMTMSWCEK*LF 456
Query: 806 ETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCA 985
E VMAV+P AS PS QL ++ SIQI P E PSPS + P E+ P
Sbjct: 455 EMVMAVDPMIASIRPSLQLEREQ*SIQI*RPPKIEIPSPSDTVLQP*CSGEALTMALPA* 276
Query: 986 AASWTCRLWRITLRTFCSVICAP 1054
SW + L T+C V+ AP
Sbjct: 275 THSWMLTP*IMMLVTYCIVMQAP 207
Score = 38.2 bits (77), Expect(2) = 8e-073
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / +1
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
+ L +EL+++S KTIDGRGA VHI
Sbjct: 130 IRLKEELLMNSFKTIDGRGADVHI 201
>gb|DR069223.1|DR069223 RTDK1_5_E09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_E09_A029 5', mRNA sequence
Length = 877
Score = 271 bits (586), Expect = 7e-072
Identities = 111/192 (57%), Positives = 132/192 (68%)
Frame = -3 / -2
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IW+DH SMS+C DGL+DAV ST IT+SN +FT H+ VML G SD D+ MQ TVA N
Sbjct: 723 IWVDHCSMSNCEDGLIDAVKASTYITISNNYFTHHNKVMLLGHSDDHHHDKVMQATVALN 544
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
HFG+GLVQRMPRCR G+FHV NNDYT W MYAIGGS NPTI+SQGNRF A + KEVT
Sbjct: 543 HFGEGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPMVKEVT 364
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
KR+ + SE+K W W S+DD LNGA+F SG Q Y + K E +TR A
Sbjct: 363 KRQNSTESEWKKWNWISEDDALLNGAYFTPSGSQVLSTYTAAYSARPKSSAVVEEITRNA 184
Query: 348 GALNCRVGRKC* 313
G L+C+ G +C*
Sbjct: 183 GVLSCKKGTRC* 148
Score = 160 bits (345), Expect = 1e-038
Identities = 82/163 (50%), Positives = 98/163 (60%)
Frame = +2 / +2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP + SS D F +SL + LVTSL + A LP L MVGF LPPM
Sbjct: 269 PDGVKYAPFSSASSSDIQFHFFHSLSVEFCLLVTSLTMGFPDAMNLLP*LSMVGFELPPM 448
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+ V*SL TWK P R GIRCT P PKWL ATV CI+LS +SL PN+IT V
Sbjct: 449 AYIPHSV*SLLNTWKYPNRHLGIRCTRPSPKWLSATVACITLS*WWSSL*PNNITLLW*V 628
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSP 922
K LE V+ V+ TAS PS+QL +++WS + L E PSP
Sbjct: 629 K*LLEMVI*VDALTASMRPSSQLDIEQWSTHMCLAVEIEIPSP 757
>gb|CO199504.1|CO199504 GEO2_1_E01.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_1_E01_A032 5', mRNA sequence
Length = 821
Score = 266 bits (576), Expect = 2e-070
Identities = 108/185 (58%), Positives = 133/185 (71%)
Frame = -3 / -1
Query: 867 MSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLV 688
+S+CADGL+DA+ GSTAIT+SN +FT H+ VML G SD+ + D M+VT+A+NHFG+GL+
Sbjct: 821 LSNCADGLIDAIMGSTAITISNSYFTHHNEVMLMGHSDSYTPDVNMRVTIAYNHFGEGLI 642
Query: 687 QRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQY 508
QRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTKR Y
Sbjct: 641 QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPANPFAKEVTKRVYGDV 462
Query: 507 SEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRV 328
E+KNW W+S+ DL LNGA+F SG Y + + A+ LT+ AG L CR
Sbjct: 461 EEWKNWNWRSKGDLMLNGAYFTPSGAGASSAYVKAASLPARPSSLVGPLTQTAGVLFCRK 282
Query: 327 GRKC* 313
G +C*
Sbjct: 281 GVRC* 267
Score = 140 bits (300), Expect = 2e-032
Identities = 82/179 (45%), Positives = 96/179 (53%)
Frame = +2 / +1
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P Q S PA VS LA ++ +Y PD +K AP RS D QF +S
Sbjct: 280 PFLQNSTPAVWVSGPTRLEGLAGRLAAFTYAEDAPAPDGVKYAPFSIRSPFDLQFQFFHS 459
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
Y+R VTS + A P L++VGF LPP+AY+SQ V*SLFTTWK P GIR
Sbjct: 460 STSPYTRFVTSFAKGFAGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIR 639
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQL 862
C P PKWL A VT I S SL P +IT VK E V+AV+P AS PSAQL
Sbjct: 640 CIRPSPKWLYAIVTRIFTSGV*LSL*PINITSLW*VK*LFEMVIAVDPMMASMRPSAQL 816
>gb|DR071311.1|DR071311 RTDK1_19_C02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_C02_A029 3', mRNA sequence
Length = 793
Score = 244 bits (527), Expect(2) = 2e-069
Identities = 100/176 (56%), Positives = 123/176 (69%)
Frame = -3 / -2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V++VI+H + +RDS H+G R +IW+DH
Sbjct: 531 GPCITVQYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDH 352
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+G
Sbjct: 351 CSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEG 172
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTK 526
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK
Sbjct: 171 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTK 4
Score = 175 bits (377), Expect(2) = 1e-045
Identities = 88/157 (56%), Positives = 99/157 (63%)
Frame = +2 / +2
Query: 527 LVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPK 706
LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+RCTSP PK
Sbjct: 5 LVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSPK 184
Query: 707 WLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQ 886
WLKA VTC+ S +SL P SIT SC LE V+AV+P AS SPS QL ++WS Q
Sbjct: 185 WLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLDKEQWSTQ 364
Query: 887 ISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
I P ETPSPSL P ES P SW
Sbjct: 365 ILFAPKMETPSPSLLVLHP*CVGESLTMAFPPGLQSW 475
Score = 40.0 bits (81), Expect(2) = 2e-069
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / -2
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRGA VHI
Sbjct: 609 IQLKEELIMNSYKTIDGRGANVHI 538
Score = 28.6 bits (56), Expect(2) = 1e-045
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1 / +1
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
+V + ++ VD LV HD+LL ELD
Sbjct: 538 NVDIGASAVDCLVTVHDKLLFELD 609
>gb|DR017596.1|DR017596 STRS1_17_G04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_G04_A034 3', mRNA sequence
Length = 761
Score = 263 bits (568), Expect = 2e-069
Identities = 109/189 (57%), Positives = 129/189 (68%)
Frame = -3 / +1
Query: 879 DHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFG 700
DH SMS+C DGL+DAV ST IT+SN +FT H+ VML G SD D+ MQ TVA NHFG
Sbjct: 1 DHCSMSNCEDGLIDAVKASTYITISNNYFTHHNKVMLLGHSDDHHHDKVMQATVALNHFG 180
Query: 699 KGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKRE 520
+GLVQRMPRCR G+FHV NNDYT W MYAIGGS NPTI+SQGNRF A + KEVTKR+
Sbjct: 181 EGLVQRMPRCRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPMVKEVTKRQ 360
Query: 519 YTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGAL 340
+ SE+K W W S+DD LNGA+F SG Q Y + K E +TR AG L
Sbjct: 361 NSAESEWKKWNWISEDDALLNGAYFTPSGSQVLSTYTAAYSARPKSSAVVEEITRNAGVL 540
Query: 339 NCRVGRKC* 313
+C+ G +C*
Sbjct: 541 SCKKGTRC* 567
Score = 151 bits (325), Expect = 7e-036
Identities = 76/148 (51%), Positives = 91/148 (61%)
Frame = +2 / -1
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP + SS D F +SL + LVTSL + A LP L MVGF LPPM
Sbjct: 446 PDGVKYAPFSSASSSDIQFHFFHSLSAEFCLLVTSLTMGFPDAMNLLP*LSMVGFELPPM 267
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+ V*SL TWK P R GIRCT P PKWL ATV CI+LS +SL PN+IT V
Sbjct: 266 AYIPHSV*SLLNTWKYPNRHLGIRCTRPSPKWLSATVACITLS*WWSSL*PNNITLLW*V 87
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRW 877
K LE V+ V+ TAS PS+QL +++W
Sbjct: 86 K*LLEMVI*VDALTASMRPSSQLDIEQW 3
>gb|DR100690.1|DR100690 STRR1_66_H02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_H02_A033 5', mRNA sequence
Length = 816
Score = 260 bits (563), Expect = 1e-068
Identities = 106/183 (57%), Positives = 128/183 (69%)
Frame = -3 / +1
Query: 888 IWIDHLSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFN 709
IW+DH S+S C DGL+DA+ GSTAIT+SN +FT HD VML G SD+ +D MQVT+AFN
Sbjct: 46 IWVDHCSLSKCNDGLIDAIMGSTAITISNNYFTHHDEVMLLGHSDSYVQDVIMQVTIAFN 225
Query: 708 HFGKGLVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVT 529
+FG+GL+QRMPRCRHG+FHVVNN Y HW MYAIGGS NPTI S+GN+F A DD KEVT
Sbjct: 226 YFGEGLIQRMPRCRHGYFHVVNNQYAHWEMYAIGGSANPTINSEGNKFLAPDDDNAKEVT 405
Query: 528 KREYTQYSEYKNWVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYA 349
KR E+ W W+S DL LNGAFF SG ++ Y + AK E++T A
Sbjct: 406 KRLDAGPDEWTQWNWRSAGDLMLNGAFFVASGAESTDSYALASSLGAKPVALVETITEEA 585
Query: 348 GAL 340
G L
Sbjct: 586 GVL 594
Score = 148 bits (318), Expect = 6e-035
Identities = 83/164 (50%), Positives = 94/164 (57%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD KKAP RS D ++S S LVTSL L SS A+ LP L++VG LPP+
Sbjct: 500 PDATKKAPFSIRSPADLQFHCVHSSGPASSLLVTSLALSSSGAKNLLPSLLIVGLALPPI 321
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQC LFTT K P R GI SP PK LKA VTCI S SL P S+T S V
Sbjct: 320 AYISQCAYWLFTT*KYPCRHLGILWISPSPK*LKAIVTCIITSCT*LSL*PRSMTSS*CV 141
Query: 794 KWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPS 925
K E VMAV+P AS PS L ++WS QI P E PSPS
Sbjct: 140 K*LFEMVMAVDPMIASIRPSLHLEREQWSTQI*RPPKIEMPSPS 9
>gb|DR746198.1|DR746198 RTCU1_35_H02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_35_H02_A029 3', mRNA sequence
Length = 753
Score = 242 bits (522), Expect(2) = 3e-068
Identities = 96/172 (55%), Positives = 121/172 (70%)
Frame = -3 / -1
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V ++I+H + +RDS H+G R D+W+DH
Sbjct: 516 GPCITVQYVSHIIIHGIHVHDCRPAGNAMVRDSPTHYGWRTISDGDGISIFGGSDVWVDH 337
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
+S+S+CADGL+DA+ GST IT+SN HFT HD +L GASD+ + D +M+VT+A+NHFGKG
Sbjct: 336 VSLSNCADGLIDAIMGSTGITISNSHFTHHDKAILLGASDSYTPDVKMRVTIAYNHFGKG 157
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFK 538
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D++ K
Sbjct: 156 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNALAK 1
Score = 152 bits (326), Expect(2) = 3e-038
Identities = 84/167 (50%), Positives = 93/167 (55%)
Frame = +2 / +2
Query: 554 STARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCI 733
S A P L++VGF LPP+AY+SQ V*SLFTTWK P GI CT PLPKWL A VT I
Sbjct: 17 SGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPLPKWLYAIVTRI 196
Query: 734 SLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITET 913
S SLAPN+I S VKW E VM V+P AS PSAQL D WS SL P E
Sbjct: 197 LTSGV*LSLAPNNIALSW*VKWLFEMVMPVDPMMASMRPSAQLDNDTWSTHTSLPPKMEI 376
Query: 914 PSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTFCSVICAP 1054
PSPSL P ES P S T W + T+ +VI P
Sbjct: 377 PSPSLIVLHP*CVGESLTIAFPAGLQS*T*MPWMMM*LTY*TVIQGP 517
Score = 38.2 bits (77), Expect(2) = 3e-068
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / -1
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRG VHI
Sbjct: 594 IQLKEELIMNSYKTIDGRGVNVHI 523
Score = 27.6 bits (54), Expect(2) = 3e-038
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1 / +1
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
+V + + VD LV HD+ L ELD
Sbjct: 523 NVDINTPSVDCLVTVHDQFLLELD 594
>gb|CF389614.1|CF389614 RTDR2_8_D07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D07_A021 5', mRNA sequence
Length = 638
Score = 242 bits (522), Expect(2) = 3e-068
Identities = 103/178 (57%), Positives = 121/178 (67%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IWIDH
Sbjct: 84 GACITVQYVHHIIIHGIHIHDCKPAGNAMVRDSPGHYGWRTRSDGDGVSIVGGSNIWIDH 263
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+C+DGL+DAV GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+G
Sbjct: 264 CSLSNCSDGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEG 443
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKRE 520
LVQR+PRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTK E
Sbjct: 444 LVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFFAPVNRFSKEVTKHE 617
Score = 188 bits (405), Expect = 6e-047
Identities = 90/159 (56%), Positives = 103/159 (64%)
Frame = +2 / -2
Query: 521 SRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPL 700
S VTSL + A+ RLPWL++VGF LPP+AY+SQCV*SLFTTWK P R G+RCTSP
Sbjct: 616 SCFVTSLEKRLTGAKNRLPWLLIVGFALPPIAYISQCV*SLFTTWK*PCRHLGMRCTSPS 437
Query: 701 PKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWS 880
PKWLKATVTC+ S +SL P S+T S V E V+AVEP TAS SPS Q ++WS
Sbjct: 436 PKWLKATVTCMLTSCTYSSLWPRSMTLSWCVIKLFEIVIAVEPRTASMSPSEQFDKEQWS 257
Query: 881 IQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASW 997
IQI L P ETPSPSL P ES P SW
Sbjct: 256 IQILLPPTMETPSPSLLVLHP*CPGESLTMAFPAGLQSW 140
Score = 38.2 bits (77), Expect(2) = 3e-068
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / +3
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +EL ++S KTIDGRGA VHI
Sbjct: 6 IQLKEELFMNSYKTIDGRGANVHI 77
>gb|CO361957.1|CO361957 NDL2_8_E07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E07_A029 3', mRNA sequence
Length = 763
Score = 256 bits (554), Expect = 2e-067
Identities = 103/175 (58%), Positives = 125/175 (71%)
Frame = -3 / +3
Query: 837 AVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGF 658
A+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRCRHG+
Sbjct: 3 AIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGY 182
Query: 657 FHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKS 478
FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E + ++ W W+S
Sbjct: 183 FHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRS 362
Query: 477 QDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+ DL LNGAFF QSG + Y + + A+ SLT YAG L CR G +C*
Sbjct: 363 EGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC* 527
Score = 157 bits (338), Expect = 1e-037
Identities = 83/171 (48%), Positives = 99/171 (57%)
Frame = +2 / -1
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 514 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 335
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 334 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 155
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTA 838
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P A
Sbjct: 154 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMA 2
>gb|CX713137.1|CX713137 RTPQ1_7_F01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_7_F01_A032 3', mRNA sequence
Length = 752
Score = 256 bits (554), Expect = 2e-067
Identities = 103/175 (58%), Positives = 125/175 (71%)
Frame = -3 / +3
Query: 837 AVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGF 658
A+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+GLVQRMPRCRHG+
Sbjct: 3 AIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEGLVQRMPRCRHGY 182
Query: 657 FHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKS 478
FHVVNNDYTHW MYAIGGS NPTI SQGNRF A ++ KEVTK E + ++ W W+S
Sbjct: 183 FHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPSNAFSKEVTKHEDAPENAWRQWNWRS 362
Query: 477 QDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+ DL LNGAFF QSG + Y + + A+ SLT YAG L CR G +C*
Sbjct: 363 EGDLMLNGAFFTQSGAASSSSYAKASSLAARPSSLVSSLTTYAGVLQCRAGSRC* 527
Score = 157 bits (338), Expect = 1e-037
Identities = 83/171 (48%), Positives = 99/171 (57%)
Frame = +2 / -2
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P PAY+V + LA +L+ L PD +K AP RS D L++
Sbjct: 514 PALHCRTPAYVVREETRDEGLAARLEALA*LDDEAAPD*VKNAPFNIRSPSDLQFHCLHA 335
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
S LVTSL AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+R
Sbjct: 334 FSGASSCLVTSLENALLGARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMR 155
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTA 838
CTSP PKWLKA VTC+ S +SL P SIT SC LE V+AV+P A
Sbjct: 154 CTSPSPKWLKAIVTCMLTS*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMA 2
>gb|DR097388.1|DR097388 STRR1_34_H05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H05_A033 3', mRNA sequence
Length = 830
Score = 254 bits (550), Expect = 6e-067
Identities = 101/177 (57%), Positives = 128/177 (72%)
Frame = -3 / +2
Query: 843 VDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRH 664
+DA+ GSTAIT+SN HFT H+ VML G SD+ + D MQ+T+A+NHFG+GLVQRMPRCRH
Sbjct: 2 IDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTPDVNMQITIAYNHFGEGLVQRMPRCRH 181
Query: 663 GFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVW 484
G+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A D+S KEVTKR ++K+W W
Sbjct: 182 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPDNSLAKEVTKRINKDADQWKDWNW 361
Query: 483 KSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
+S+ D+ LNGA+F SG Y + ++A+ LT+ AG L+C+ G +C*
Sbjct: 362 RSKGDMMLNGAYFTPSGAGASSAYLKASSLEARPSTLVGPLTQNAGVLSCKKGTRC* 532
Score = 138 bits (296), Expect = 7e-032
Identities = 78/173 (45%), Positives = 93/173 (53%)
Frame = +2 / -3
Query: 323 LPTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLY 502
+P Q S PA+ VS LA + Y PD +K APL S D Q +
Sbjct: 522 VPFLQESTPAFWVSGPTSVEGLASRLDAFKYAEDAPAPDGVKYAPLSIISPFDLQFQSFH 343
Query: 503 SLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGI 682
++ R VTSL L S A P L++VGF LPP+AY+SQ V*SLFTTWK P GI
Sbjct: 342 *SASLFIRFVTSLAKLLSGAENLFP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGI 163
Query: 683 RCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTAS 841
CT P PKWL A V C+ S SL PN+IT VKW E V+AV+P AS
Sbjct: 162 LCTRPSPKWLYAIVICMLTSGV*LSL*PNNITSLW*VKWLFEMVIAVDPMMAS 4
>gb|CF665374.1|CF665374 RTCNT1_15_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_15_D05_A029 5', mRNA sequence
Length = 583
Score = 234 bits (506), Expect(2) = 1e-066
Identities = 94/163 (57%), Positives = 115/163 (70%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V++VI+H + +RDS H+G R +IW+DH
Sbjct: 90 GPCITVQYVKHVIIHGIHIHDCKPGGNAMVRDSPTHYGWRTRSDGDGVSIFGANNIWVDH 269
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+SSC DGL+DA+ GSTAIT+SN + ++HD VML G SD ++D MQVT+AFNHFG+G
Sbjct: 270 CSLSSCTDGLIDAIRGSTAITISNNYMSQHDKVMLLGHSDDYTQDVNMQVTIAFNHFGEG 449
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRF 565
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF
Sbjct: 450 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 578
Score = 170 bits (366), Expect(2) = 5e-044
Identities = 83/146 (56%), Positives = 94/146 (64%)
Frame = +2 / -1
Query: 560 ARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISL 739
AR RLPWL++VGF LPP+AY+SQ V*SLFTTWK P R G+RCTSP PKWLKA VTC+
Sbjct: 583 ARNRLPWLLIVGFALPPIAYISQ*V*SLFTTWKYPCRHLGMRCTSPSPKWLKAIVTCMLT 404
Query: 740 SLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPS 919
S +SL P SIT SC LE V+AV+P AS SPS QL ++WS QI P ETPS
Sbjct: 403 S*V*SSLWPRSITLSCCDI*LLEMVIAVDPRMASMSPSVQLDKEQWSTQILFAPKMETPS 224
Query: 920 PSLSPRTPQWCCESRIAPPPCAAASW 997
PSL P ES P SW
Sbjct: 223 PSLLVLHP*CVGESLTMAFPPGLQSW 146
Score = 40.0 bits (81), Expect(2) = 1e-066
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -3 / +3
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +ELI++S KTIDGRGA VHI
Sbjct: 12 IQLKEELIMNSYKTIDGRGANVHI 83
Score = 28.6 bits (56), Expect(2) = 5e-044
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1 / -3
Query: 1057 DVHLRSAPVDGLVAAHDELLAELD 1128
+V + ++ VD LV HD+LL ELD
Sbjct: 83 NVDIGASAVDCLVTVHDKLLFELD 12
>gb|BX250981.1|BX250981 BX250981 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP043G03 similar to PECTATE LYASE PRECURSOR,
mRNA sequence
Length = 678
Score = 253 bits (546), Expect = 2e-066
Identities = 104/179 (58%), Positives = 123/179 (68%)
Frame = -3 / +3
Query: 825 STAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVV 646
STAIT+SN HFT HD VML G +D + D+ MQVT+AFNHFG+GLVQRMPRCRHG+FHVV
Sbjct: 12 STAITISNNHFTHHDKVMLLGHNDGYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVV 191
Query: 645 NNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDL 466
NNDYTHW MYAIGGS NPTI S+GNR+ A D KE+TKR T + +KNW W+SQ DL
Sbjct: 192 NNDYTHWEMYAIGGSANPTINSEGNRYLAPVDRFAKEITKRVDTPHGRWKNWNWRSQGDL 371
Query: 465 FLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC*CVCSSRLQ 289
FLNGAFF SG Y + + A+ + LT AG L CR G +C* L+
Sbjct: 372 FLNGAFFINSGAGAASSYAKASSLGARPASRVKFLTGNAGPLACRTGSRC*TALKLELR 548
Score = 137 bits (294), Expect = 1e-031
Identities = 76/167 (45%), Positives = 96/167 (57%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P RQ PA+ V + LA + + L + P+ +K APLRN+S D QF +
Sbjct: 511 PVRQARGPAFPVRNFTRDAGLAPRLEAFA*LEAAPAPELMKNAPLRNKSP*DLQFQFFHL 332
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
+ V +R V SL S+ AR P L++VG LPP+AY+SQ V*SL TT K P R G+R
Sbjct: 331 PWGVSTRFVISLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLLTT*KYPWRHLGMR 152
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVE 826
CT P PKWL A VTC+ LS SL P S+T S VK E V+AVE
Sbjct: 151 CTRPSPKWLNAIVTCMFLSGA*PSLCPRSMTLSWWVK*LFEMVIAVE 11
>gb|CF473597.1|CF473597 RTWW2_3_C02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_3_C02_A021 5', mRNA sequence
Length = 682
Score = 252 bits (544), Expect = 4e-066
Identities = 103/178 (57%), Positives = 125/178 (70%)
Frame = -3 / +3
Query: 846 LVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCR 667
L+DA+ G TAIT+SN HFT H+ VML G SD+ + D MQVT+AFNHFG+GLVQRMPRCR
Sbjct: 3 LIDAIMGFTAITISNNHFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEGLVQRMPRCR 182
Query: 666 HGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWV 487
HG+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTKRE +E++ W
Sbjct: 183 HGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFSAPANPFAKEVTKREDNNVNEWRQWN 362
Query: 486 WKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
W+S+ D+ LNGA+F SG Y + + A+ + LT AG L CR G +C*
Sbjct: 363 WRSEGDMLLNGAYFVPSGAGAASAYAKASSLGARPSSLVQPLTATAGVLTCRRGVRC* 536
Score = 132 bits (283), Expect = 4e-030
Identities = 77/172 (44%), Positives = 92/172 (53%)
Frame = +2 / -1
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P Q+S PA VS LA + +Y + PD K AP + S D L+S
Sbjct: 523 PLLQVSTPAVAVSGWTRLEGLAPRLDAFAYAEAAPAPDGTKYAPFSSISPSDLQFHCLHS 344
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
+ S VTSL + A LP L++VGF LPP+AY+SQ V*SLFTTWK P GI
Sbjct: 343 FTLLSSLFVTSLAKGFAGAENLLP*LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGIL 164
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTAS 841
CT P PK L A VTC+ S SL PN+IT VKW E V+AV P AS
Sbjct: 163 CTRPSPK*LNAIVTCMLTSGV*LSL*PNNITSLW*VKWLFEMVIAVNPMMAS 8
>gb|CR354745.1|CR354745 CR354745 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 125H08, mRNA sequence
Length = 582
Score = 251 bits (542), Expect = 8e-066
Identities = 101/187 (54%), Positives = 124/187 (66%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V N+I+H + +R S H+G R +W+DH
Sbjct: 21 GPCITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYGWRTMCDGDGVSIFGGSHVWVDH 200
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S CADGL+DA+ STAIT+SN HFT HD VML G +D + D+ MQVT+AFNHFG+G
Sbjct: 201 CSLSKCADGLIDAIMASTAITISNNHFTHHDKVMLLGHNDGYAPDKNMQVTIAFNHFGEG 380
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYT 514
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI S+GNR+ A D KE+TKR T
Sbjct: 381 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSEGNRYLAPVDRFAKEITKRVDT 560
Query: 513 QYSEYKN 493
+ +KN
Sbjct: 561 PHGRWKN 581
Score = 151 bits (325), Expect = 7e-036
Identities = 86/187 (45%), Positives = 103/187 (55%)
Frame = +2 / -3
Query: 494 FLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQ 673
F + + V +R V SL S+ AR P L++VG LPP+AY+SQ V*SL TT K P R
Sbjct: 580 FFHLPWGVSTRFVISLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLLTT*KYPWRH 401
Query: 674 RGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPS 853
G+RCT P PKWL A VTC+ LS SL P S+T S VK E V+AVE AS SPS
Sbjct: 400 LGMRCTRPSPKWLNAIVTCMFLSGA*PSLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPS 221
Query: 854 AQLLMDRWSIQISLDPITETPSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTF 1033
A L ++ S Q L P ETPSPS P E R P SW W I T+
Sbjct: 220 AHLESEQ*STQTWLPPKIETPSPSHIVLHP*CVGELRTMAFPAGLQSWI*IPWMIMFVTY 41
Query: 1034 CSVICAP 1054
C+V+ P
Sbjct: 40 CTVMQGP 20
>gb|CO366790.1|CO366790 RTK1_30_C11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_30_C11_A029 3', mRNA sequence
Length = 821
Score = 248 bits (535), Expect = 7e-065
Identities = 102/175 (58%), Positives = 120/175 (68%)
Frame = -3 / +2
Query: 813 TVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHGFFHVVNNDY 634
T+SN HFT HD VML G +DA + D+ MQVT+AFNHFG+GLVQRMPRCRHG+FHVVNNDY
Sbjct: 2 TISNNHFTHHDKVMLLGHNDAYAPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY 181
Query: 633 THWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWKSQDDLFLNG 454
THW MYAIGGS NPTI S+GNR+ A D KEVTKR T + +KNW W+SQ DLFLNG
Sbjct: 182 THWEMYAIGGSANPTINSEGNRYLAPVDRFAKEVTKRVETPHGRWKNWNWRSQGDLFLNG 361
Query: 453 AFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC*CVCSSRLQ 289
A+F SG Y + + AK + LT AG L CR G +C* L+
Sbjct: 362 AYFINSGAGAASSYAKASSLGAKPASRVKFLTGNAGPLACRTGSRC*MALKLELR 526
Score = 140 bits (300), Expect = 2e-032
Identities = 77/163 (47%), Positives = 96/163 (58%)
Frame = +2 / -3
Query: 326 PTRQLSAPAYLVSDSAYWPPLAWMRSSLSYLRSFWPPDWLKKAPLRNRSSCDFHTQFLYS 505
P RQ PA+ V + LA + + L + P+ +K APLRN+S D QF +
Sbjct: 489 PVRQARGPAFPVRNFTRDAGLAPRLEAFA*LEAAPAPELMKYAPLRNKSP*DLQFQFFHL 310
Query: 506 LYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIR 685
+ V +R VTSL S+ AR P L++VG LPP+AY+SQ V*SLFTT K P R G+R
Sbjct: 309 PWGVSTRFVTSLAKRSTGARYLFPSLLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMR 130
Query: 686 CTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLVKWPLETV 814
CT P PKWLKA VTC+ LS ASL P S+T S VK E V
Sbjct: 129 CTRPSPKWLKAIVTCMFLSGA*ASLCPRSMTLSWWVK*LFEMV 1
>gb|CF400507.1|CF400507 RTWW1_5_D03.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_D03_A015 5', mRNA sequence
Length = 738
Score = 247 bits (533), Expect = 1e-064
Identities = 106/176 (60%), Positives = 119/176 (67%)
Frame = -3 / +1
Query: 840 DAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPRCRHG 661
DA+ GSTAIT+SN T HD VML G SD +D MQVTVAFNHFG+GLVQR+PRCRHG
Sbjct: 1 DAILGSTAITISNNFMTHHDKVMLLGHSDEYVQDVNMQVTVAFNHFGEGLVQRIPRCRHG 180
Query: 660 FFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKNWVWK 481
+FHVVNNDYTHW MYAIGGS NPTI SQGNRF A + KEVTK E S ++ W W+
Sbjct: 181 YFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPVNRFSKEVTKHEDAPESAWRQWNWR 360
Query: 480 SQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
S DL LNGAFF QSG Y + + AK SLT AG L CR G +C*
Sbjct: 361 SDGDLMLNGAFFTQSGAAASSSYAKASSLAAKPSSLVGSLTGNAGVLACRKGTRC* 528
Score = 152 bits (326), Expect = 5e-036
Identities = 72/135 (53%), Positives = 86/135 (63%)
Frame = +2 / -2
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP RS D ++L S VTSL + AR RLPWL++VG LPP+
Sbjct: 407 PD*VKNAPFNIRSPSDLQFHCRHALSGASSCFVTSLEKRLTGARNRLPWLLIVGLALPPI 228
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+SQCV*SLFTTWK P R G+RCTSP PKWLKATVTC+ S +SL P S+T S V
Sbjct: 227 AYISQCV*SLFTTWK*PCRHLGMRCTSPSPKWLKATVTCMLTSCTYSSLWPRSMTLSWCV 48
Query: 794 KWPLETVMAVEPSTA 838
E V+AV+P A
Sbjct: 47 IKLFEIVIAVDPRIA 3
>gb|DR023301.1|DR023301 STRS1_56_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_E08_A034 5', mRNA sequence
Length = 717
Score = 247 bits (533), Expect = 1e-064
Identities = 103/180 (57%), Positives = 122/180 (67%)
Frame = -3 / -3
Query: 852 DGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKGLVQRMPR 673
DGL+DAV ST IT+SN +FT H+ VML G SD D+ MQ TVA NHFG+GLVQRMPR
Sbjct: 715 DGLIDAVKASTYITISNNYFTHHNKVMLLGHSDDHHHDKVMQATVALNHFGEGLVQRMPR 536
Query: 672 CRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRFRAVDDSRFKEVTKREYTQYSEYKN 493
CR G+FHV NNDYT W MYAIGGS NPTI+SQGNRF A + KEVTKR+ + SE+K
Sbjct: 535 CRFGYFHVFNNDYTEWGMYAIGGSSNPTILSQGNRFMASGNPMVKEVTKRQNSAESEWKK 356
Query: 492 WVWKSQDDLFLNGAFFNQSGGQNERKYDRLDLIQAKGGQYAESLTRYAGALNCRVGRKC* 313
W W S+DD LNGA+F SG Q Y + K E +TR AG L+C+ G +C*
Sbjct: 355 WNWISEDDALLNGAYFTPSGSQVLSTYTAAYSARPKSSAVVEEITRNAGVLSCKKGTRC* 176
Score = 142 bits (304), Expect = 5e-033
Identities = 73/140 (52%), Positives = 84/140 (60%)
Frame = +2 / +3
Query: 434 PDWLKKAPLRNRSSCDFHTQFLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPPM 613
PD +K AP + SS D F +SL + LVTSL + A LP L MVGF LPPM
Sbjct: 297 PDGVKYAPFSSASSSDIQFHFFHSLSAEFCLLVTSLTMGFPDAMNLLP*LSMVGFELPPM 476
Query: 614 AYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAPNSITWSCLV 793
AY+ V*SL TWK P R GIRCT P PKWL ATV CI+LS +SL PN+IT V
Sbjct: 477 AYIPHSV*SLLNTWKYPNRHLGIRCTRPSPKWLSATVACITLS*WWSSL*PNNITLLW*V 656
Query: 794 KWPLETVMAVEPSTASTSPS 853
K LE V+ V+ TAS PS
Sbjct: 657 K*LLEMVI*VDALTASMRPS 716
>gb|BQ696543.1|BQ696543 NXPV_042_E02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_042_E02 5' similar to Arabidopsis
thaliana sequence At5g48900 pectate lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 629
Score = 229 bits (494), Expect(2) = 6e-064
Identities = 90/163 (55%), Positives = 110/163 (67%)
Frame = -3 / +3
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V N+I+H + +R S H+G R +W+DH
Sbjct: 93 GPCITVQYVTNIIIHGIHIHDCRPAGNAMVRSSPTHYGWRTMCDGDGVSIFGGSHVWVDH 272
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DA+ STAIT+SN HFT HD VML G +DA + D+ MQVT+AFNHFG+
Sbjct: 273 CSLSNCADGLIDAIMASTAITISNNHFTHHDKVMLLGHNDAYAPDKNMQVTIAFNHFGEX 452
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIISQGNRF 565
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI GNR+
Sbjct: 453 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINXXGNRY 581
Score = 147 bits (315), Expect(2) = 1e-036
Identities = 81/168 (48%), Positives = 95/168 (56%)
Frame = +2 / -2
Query: 551 SSTARKRLPWLMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTC 730
S+ R P ++VG LPP+AY+SQ V*SLFTT K P R G+RCT PKWLKA VTC
Sbjct: 595 STXXRYLXPXXLIVGLALPPIAYISQ*V*SLFTT*KYPWRHLGMRCTRXSPKWLKAIVTC 416
Query: 731 ISLSLDAASLAPNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITE 910
+ LS ASL P S+T S VK E V+AVE AS SPSAQL ++ S Q L P E
Sbjct: 415 MFLSGA*ASLCPRSMTLSWWVK*LFEMVIAVEAMIASMSPSAQLESEQ*STQTWLPPKIE 236
Query: 911 TPSPSLSPRTPQWCCESRIAPPPCAAASWTCRLWRITLRTFCSVICAP 1054
TPSPS P E R P SW W I T+C+V+ P
Sbjct: 235 TPSPSHIVLHP*CVGELRTMAFPAGLQSWI*IPWMIMFVTYCTVMQGP 92
Score = 36.3 bits (73), Expect(2) = 6e-064
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3 / +3
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
+ L +ELI++S KTIDGRG VHI
Sbjct: 15 IMLKEELIMNSYKTIDGRGVNVHI 86
Score = 27.2 bits (53), Expect(2) = 1e-036
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 1058 MCTCAPRPSMVLSLLTMSS 1114
M T PRPSMVL L MSS
Sbjct: 85 M*TLTPRPSMVL*LFMMSS 29
>gb|CF399982.1|CF399982 RTWW1_2_B02.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_2_B02_A015 5', mRNA sequence
Length = 585
Score = 228 bits (492), Expect(2) = 9e-064
Identities = 91/158 (57%), Positives = 110/158 (69%)
Frame = -3 / +1
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
G IT+Q V N+I+H + +RDS H+G R IW+DH
Sbjct: 112 GPCITVQYVTNIIIHGIHVHDCKPAGNAMVRDSPTHYGWRTICDGDGISIFGGSHIWVDH 291
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
+S+S+CADGL+DA+ GSTAIT+SN HFT H+ VML G SD+ + D MQVT+AFNHFG+G
Sbjct: 292 VSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTPDVNMQVTIAFNHFGEG 471
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAIGGSRNPTIIS 580
LVQRMPRCRHG+FHVVNNDYTHW MYAIGGS NPTI S
Sbjct: 472 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINS 585
Score = 131 bits (281), Expect = 8e-030
Identities = 65/115 (56%), Positives = 75/115 (65%)
Frame = +2 / -2
Query: 581 LMMVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASL 760
L++VGF LPP+AY+SQ V*SLFTTWK P GI CT P PK L A VTC+ S SL
Sbjct: 584 LLIVGFALPPIAYISQ*V*SLFTTWKYPCLHLGILCTRPSPK*LNAIVTCMLTSGV*LSL 405
Query: 761 APNSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPS 925
PN+IT VKW E V+AV+P AS PSAQL + WS Q+ L P E PSPS
Sbjct: 404 *PNNITSLW*VKWLFEMVIAVDPMMASMRPSAQLDKETWSTQMWLPPKMEIPSPS 240
Score = 36.8 bits (74), Expect(2) = 9e-064
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -3 / +1
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
+ L +ELI++S KTIDGRG VHI
Sbjct: 34 ITLKEELIMNSFKTIDGRGVNVHI 105
>gb|CF669425.1|CF669425 RTCNT1_43_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_43_G02_A029 3', mRNA sequence
Length = 655
Score = 201 bits (433), Expect(3) = 1e-063
Identities = 83/148 (56%), Positives = 99/148 (66%)
Frame = -3 / -2
Query: 1053 GAQITLQNVRNVILHNLXXXXXXXXXXXAIRDSQHHWGVRXXXXXXXXXXXXXXDIWIDH 874
GA IT+Q V ++I+H + +RDS H+G R +IWIDH
Sbjct: 561 GACITVQYVHHIIIHGIHIHDCKPAGNATVRDSPGHYGWRTRSDGDGVSIVGGSNIWIDH 382
Query: 873 LSMSSCADGLVDAVDGSTAITVSNGHFTRHDHVMLFGASDAASKDREMQVTVAFNHFGKG 694
S+S+CADGL+DAV GSTAIT+SN T HD VML G SD +D MQVTVAFN FG+G
Sbjct: 381 CSLSNCADGLIDAVLGSTAITISNNFMTHHDKVMLLGHSDEYMQDVNMQVTVAFNRFGEG 202
Query: 693 LVQRMPRCRHGFFHVVNNDYTHWLMYAI 610
LVQR+PRCRHG+FHVVNNDYTHW MYAI
Sbjct: 201 LVQRIPRCRHGYFHVVNNDYTHWEMYAI 118
Score = 145 bits (311), Expect(2) = 5e-041
Identities = 73/137 (53%), Positives = 85/137 (62%)
Frame = +2 / +2
Query: 587 MVGFRLPPMAYMSQCV*SLFTTWKKP*RQRGIRCTSPLPKWLKATVTCISLSLDAASLAP 766
++G +AY+SQCV*SLFTTWK P R G+RCTSP PK LKATVTC+ S +SL P
Sbjct: 95 LLGSHFHQIAYISQCV*SLFTTWK*PCRHLGMRCTSPSPKRLKATVTCMLTSCIYSSL*P 274
Query: 767 NSITWSCLVKWPLETVMAVEPSTASTSPSAQLLMDRWSIQISLDPITETPSPSLSPRTPQ 946
S+T S V E V+AV+P TAS SPSAQ ++WSIQI L P ETPSPSL P
Sbjct: 275 RSMTLSWCVIKLFEIVIAVDPRTASMSPSAQFDKEQWSIQILLPPTMETPSPSLLVLHP* 454
Query: 947 WCCESRIAPPPCAAASW 997
ES P SW
Sbjct: 455 CPGESLTVAFPAGLQSW 505
Score = 43.7 bits (89), Expect(3) = 1e-063
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = -3 / -3
Query: 609 GGSRNPTIISQGNRFRAVDDSRFKEVTKRE 520
GGS NPTI SQGNRF A + KEVTK E
Sbjct: 116 GGSANPTINSQGNRFHAPVNPFSKEVTKHE 27
Score = 43.7 bits (89), Expect(2) = 5e-041
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +2 / +1
Query: 494 FLYSLYCVYSRLVTSLNLLSSTARKRLPWLMMVGFRLPP 610
FL++L S VTSL + A RLPWL++VGF LPP
Sbjct: 1 FLHTLSSASSCFVTSLEKGLTGAWNRLPWLLIVGFALPP 117
Score = 38.2 bits (77), Expect(3) = 1e-063
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = -3 / -2
Query: 1128 VELCQELIVSSDKTIDGRGAQVHI 1057
++L +EL ++S KTIDGRGA VHI
Sbjct: 639 IQLKEELFMNSYKTIDGRGANVHI 568
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 458,679,269
Number of Sequences: 355925
Number of extensions: 6426758
Number of successful extensions: 41434
Number of sequences better than 1.0e-020: 151
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 17407559000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)