TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA... 173 2e-041
dbj|AP003575.2| Oryza sativa (japonica cultivar-group) geno... 173 2e-041
dbj|AP005382.3| Oryza sativa (japonica cultivar-group) geno... 173 2e-041
gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) c... 173 2e-041
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 173 2e-041
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 173 2e-041
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 173 2e-041
gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibbe... 173 2e-041
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 173 2e-041
gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3... 152 4e-035
dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA... 143 2e-032
gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (... 142 4e-032
dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chro... 142 4e-032
dbj|AP005636.2| Oryza sativa (japonica cultivar-group) geno... 142 4e-032
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 142 4e-032
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 142 4e-032
dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA... 130 2e-029
gb|AC120987.2| Oryza sativa (japonica cultivar-group) chrom... 125 4e-027
gb|AC136218.2| Oryza sativa (japonica cultivar-group) chrom... 125 4e-027
gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) c... 125 4e-027
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 125 4e-027
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 125 4e-027
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 125 4e-027
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 125 4e-027
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-023
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 113 1e-023
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 113 2e-023
gb|AACV01020686.1| Oryza sativa (japonica cultivar-group) c... 113 2e-023
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 113 2e-023
gb|AC078891.2| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
>dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C07, full
insert sequence
Length = 433
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 160 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 339
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 340 GPKCP* 357
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528B02
Length = 144495
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 25016 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 24837
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 24836 GPKCP* 24819
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1001_B06
Length = 134810
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 129708 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 129529
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 129528 GPKCP* 129511
>gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013512, whole
genome shotgun sequence
Length = 35802
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 28470 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 28649
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 28650 GPKCP* 28667
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 4550967 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 4550788
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 4550787 GPKCP* 4550770
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 275270 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 275091
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 275090 GPKCP* 275073
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 8882922 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 8882743
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 8882742 GPKCP* 8882725
>gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibberellin-stimulated
protein (Gsr1) gene, complete cds
Length = 881
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 349 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 528
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 529 GPKCP* 546
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 173 bits (372), Expect = 2e-041
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2 / -1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTKEG
Sbjct: 8859387 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTKEG 8859208
Query: 422 GPKCP* 439
GPKCP*
Sbjct: 8859207 GPKCP* 8859190
>gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30180, mRNA sequence
Length = 313
Score = 152 bits (326), Expect = 4e-035
Identities = 51/58 (87%), Positives = 52/58 (89%)
Frame = +2 / +2
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTK 415
NL PWECSPKC RCS TQY+KACLT CNKCCAKCLCVPPG YGNKGACPCYNNWKTK
Sbjct: 134 NLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWKTK 307
>dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H09, full
insert sequence
Length = 697
Score = 143 bits (307), Expect = 2e-032
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L ++CSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK G
Sbjct: 270 SLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRG 449
Query: 422 GPKCP*K 442
GPKCP*K
Sbjct: 450 GPKCP*K 470
>gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0029E15f, DNA sequence
Length = 506
Score = 142 bits (304), Expect = 4e-032
Identities = 48/62 (77%), Positives = 51/62 (82%)
Frame = +2 / -1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK GGPKCP
Sbjct: 242 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 63
Query: 437 *K 442
*K
Sbjct: 62 *K 57
>dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0439F12, ***
SEQUENCING IN PROGRESS ***
Length = 152695
Score = 142 bits (304), Expect = 4e-032
Identities = 48/62 (77%), Positives = 51/62 (82%)
Frame = +2 / +3
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK GGPKCP
Sbjct: 145707 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 145886
Query: 437 *K 442
*K
Sbjct: 145887 *K 145892
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0707C02
Length = 163609
Score = 142 bits (304), Expect = 4e-032
Identities = 48/62 (77%), Positives = 51/62 (82%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK GGPKCP
Sbjct: 60841 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 61020
Query: 437 *K 442
*K
Sbjct: 61021 *K 61026
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 142 bits (304), Expect = 4e-032
Identities = 48/62 (77%), Positives = 51/62 (82%)
Frame = +2 / +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK GGPKCP
Sbjct: 467255 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 467434
Query: 437 *K 442
*K
Sbjct: 467435 *K 467440
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 142 bits (304), Expect = 4e-032
Identities = 48/62 (77%), Positives = 51/62 (82%)
Frame = +2 / +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
ECSP+C RCS+TQY+K CL CNKCC CLCVP G YGNKG CPCYNNWKTK GGPKCP
Sbjct: 14775452 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 14775631
Query: 437 *K 442
*K
Sbjct: 14775632 *K 14775637
>dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G05, full
insert sequence
Length = 1086
Score = 130 bits (278), Expect(2) = 2e-029
Identities = 45/68 (66%), Positives = 50/68 (73%)
Frame = +2 / +1
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L P EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK G
Sbjct: 517 SLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRG 696
Query: 422 GPKCP*KI 445
GPKCP* I
Sbjct: 697 GPKCP*LI 720
Score = 23.1 bits (44), Expect(2) = 2e-029
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 115 LLPVARIPAPRRRLSR 162
LLP+ P PRRR +R
Sbjct: 398 LLPLPTPPPPRRRTTR 445
>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0007A06, complete sequence
Length = 148029
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -3
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 75451 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 75272
Query: 437 *KI 445
* I
Sbjct: 75271 *LI 75263
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0039A21, complete sequence
Length = 139074
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 7379 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 7200
Query: 437 *KI 445
* I
Sbjct: 7199 *LI 7191
>gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012019, whole
genome shotgun sequence
Length = 8587
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 5992 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 6171
Query: 437 *KI 445
* I
Sbjct: 6172 *LI 6180
>ref|NT_107210.1| Oryza sativa (japonica cultivar-group)
Length = 1353368
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 1033336 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 1033157
Query: 437 *KI 445
* I
Sbjct: 1033156 *LI 1033148
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043
genomic scaffold, whole genome shotgun sequence
Length = 11965857
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 466967 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 466788
Query: 437 *KI 445
* I
Sbjct: 466787 *LI 466779
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -3
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 17767280 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 17767101
Query: 437 *KI 445
* I
Sbjct: 17767100 *LI 17767092
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 125 bits (268), Expect = 4e-027
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2 / -1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC +C RCS T YRK C+ C KCCA CLCV PG YGNK +CPCYN+WKTK GGPKCP
Sbjct: 18040124 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 18039945
Query: 437 *KI 445
* I
Sbjct: 18039944 *LI 18039936
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 113 bits (241), Expect(2) = 1e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 984316 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984495
Query: 437 * 439
*
Sbjct: 984496 * 984498
Score = 34.1 bits (68), Expect(2) = 1e-023
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1 / +3
Query: 433 PLEDPPQLPSAIVPSSPNLERVVHLXPP 516
PL DPP P+A V P L R+ L PP
Sbjct: 1458747 PLRDPPPPPTAAVVPPPRLPRLQALAPP 1458830
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 113 bits (241), Expect(2) = 1e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 1117489 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 1117668
Query: 437 * 439
*
Sbjct: 1117669 * 1117671
Score = 34.1 bits (68), Expect(2) = 1e-023
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 433 PLEDPPQLPSAIVPSSPNLERVVHLXPP 516
PL DPP P+A V P L R+ L PP
Sbjct: 1561180 PLRDPPPPPTAAVVPPPRLPRLQALAPP 1561263
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 113 bits (241), Expect(2) = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 989455 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 989634
Query: 437 * 439
*
Sbjct: 989635 * 989637
Score = 34.1 bits (68), Expect(2) = 2e-023
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1 / +3
Query: 433 PLEDPPQLPSAIVPSSPNLERVVHLXPP 516
PL DPP P+A V P L R+ L PP
Sbjct: 1463886 PLRDPPPPPTAAVVPPPRLPRLQALAPP 1463969
>gb|AACV01020686.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020686, whole
genome shotgun sequence
Length = 50720
Score = 113 bits (241), Expect = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +2
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 13331 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 13510
Query: 437 * 439
*
Sbjct: 13511 * 13513
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 113 bits (241), Expect = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 1117489 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 1117668
Query: 437 * 439
*
Sbjct: 1117669 * 1117671
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
complete sequence
Length = 22685906
Score = 113 bits (241), Expect = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 984316 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984495
Query: 437 * 439
*
Sbjct: 984496 * 984498
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0092N12, complete sequence
Length = 109198
Score = 113 bits (241), Expect = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / -1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 18238 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 18059
Query: 437 * 439
*
Sbjct: 18058 * 18056
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 113 bits (241), Expect = 2e-023
Identities = 39/61 (63%), Positives = 43/61 (70%)
Frame = +2 / +1
Query: 257 ECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGGPKCP 436
EC KC RCS T + C+T CN CC +CLCVP G YGNK CPCYNN KT+EG PKCP
Sbjct: 984313 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984492
Query: 437 * 439
*
Sbjct: 984493 * 984495
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,136,772,964
Number of Sequences: 438736
Number of extensions: 41662913
Number of successful extensions: 312753
Number of sequences better than 1.0e-020: 47
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 143398885198
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)