TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA735030.1|AA735030 EST00010 young root nodules Medicago... 195 1e-050
>gb|AA735030.1|AA735030 EST00010 young root nodules Medicago sativa subsp. x varia cDNA
clone Mscp14 5' similar to 3-oxoacyl-(acyl carrier
protein) reductase homologue, mRNA sequence
Length = 416
Score = 195 bits (420), Expect = 1e-050
Identities = 83/104 (79%), Positives = 92/104 (88%)
Frame = -3 / +3
Query: 515 GLTGNVGQANYSAAKAGVIGFTKTVAREYASRNINVNAIAPGFIASDMTAELGEELEKKI 336
GL GN GQANY+AAKAGVIG TK+VA+EY+SR I VNA+APGFIASDMTA+LG +LEKKI
Sbjct: 9 GLIGNAGQANYAAAKAGVIGLTKSVAKEYSSRGITVNAVAPGFIASDMTAKLGNDLEKKI 188
Query: 335 LSTIPLGRYGQPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM 204
L IPLGRYGQPE VAGLVEFLAL+ AASY+TGQV TIDG MVM
Sbjct: 189 LEAIPLGRYGQPEXVAGLVEFLALSQAASYITGQVFTIDGXMVM 320
Score = 129 bits (276), Expect = 8e-031
Identities = 56/85 (65%), Positives = 64/85 (75%)
Frame = +1 / -2
Query: 202 YITIPPSIVSTCPVI*LAAGLRARNSTNPATSSGWPYLPNGMVDKIFFXXXXXXXAVISD 381
YITI PS+V TCPV+*LAA L A+NSTNPAT SGWPY PNG+ KIFF AV+SD
Sbjct: 322 YITIXPSMVKTCPVM*LAA*LSAKNSTNPATXSGWPYRPNGIASKIFFSRSFPNLAVMSD 143
Query: 382 AMNPGAIAFTLIFLLAYSLATVFVK 456
AMNPGA A T++ LL YS AT FV+
Sbjct: 142 AMNPGATALTVMPLLEYSFATDFVR 68
Score = 105 bits (225), Expect = 8e-024
Identities = 49/106 (46%), Positives = 66/106 (62%)
Frame = +3 / -1
Query: 201 LHYHPSVNCKHLSSHIASCGVKGQELDQPCNFLWLAISP*RNG*QDFLLKLFSKFGSHIR 380
LH+H S+N ++L S +A K QE N WLAIS * N Q+ LK+ S GSH+R
Sbjct: 323 LHHHTSINGENLPSDVAGSLTKRQEFH*SSNXFWLAISS*WNCLQNLFLKVIS*LGSHVR 144
Query: 381 CNEPWCNSIHIDISACILPGNCFCETNHSSLGCAIISLANIASKTN 518
CNE W NSI+ D SA I N FC+ N+S +II L++IA++T+
Sbjct: 143 CNESWSNSINSDASARIFLCNRFCQANYSCFCSSIIGLSSIANQTS 6
Score = 100 bits (213), Expect = 4e-022
Identities = 41/102 (40%), Positives = 62/102 (60%)
Frame = -2 / +2
Query: 507 WQCWPS*L*RSQGWSDWFHKNSCQGVCKQKYQCECYCTRVHCI*YDCRTWRRA*EENLVN 328
WQCW S L + S+W K C+G+ Q++ C C C+R+HCI*+DC+ + *E++
Sbjct: 17 WQCWTSQLCCCKSRSNWPDKICCKGIF*QRHHC*CCCSRIHCI*HDCQVRK*P*EKDFGG 196
Query: 327 HSVREIWPTRGSCRVGRVPGP*PRS*LYDWTGAYN*RRDGNV 202
+S+R IWPTR SC + + G * L+ W G ++* G+V
Sbjct: 197 NSIRTIWPTRXSCWISGILGA*SSCQLHHWAGFHH*WXYGDV 322
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,271,180
Number of Sequences: 7669
Number of extensions: 157728
Number of successful extensions: 1234
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 342712773
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)