TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Ka... 142 4e-035
>gb|AJ410118.1|AJ410118 AJ410118 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U380, mRNA sequence
Length = 672
Score = 142 bits (305), Expect = 4e-035
Identities = 46/69 (66%), Positives = 55/69 (79%)
Frame = +2 / +2
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G GSL+ ++C +C+ RC T Y KPC+FFC+KCC CLCVPPG YGNK CPCYNNWKT
Sbjct: 149 GPGSLKSYQCPSQCSRRCGQTQYHKPCMFFCQKCCKKCLCVPPGYYGNKAVCPCYNNWKT 328
Query: 503 KRGGPKCP* 529
++GGPKCP*
Sbjct: 329 QQGGPKCP* 355
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,421,618
Number of Sequences: 7669
Number of extensions: 53870
Number of successful extensions: 1101
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 163058720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)