TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493645.2.1
(870 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ248332.1|AJ248332 AJ248332 Medicago sativa subsp. x va... 122 6e-029
gb|CO513284.1|CO513284 s13dSG37B1200093_129732 Glandular tr... 96 6e-021
>gb|AJ248332.1|AJ248332 AJ248332 Medicago sativa subsp. x varia young root nodule Medicago
sativa subsp. x varia cDNA clone MsNod605, mRNA sequence
Length = 394
Score = 122 bits (261), Expect = 6e-029
Identities = 45/64 (70%), Positives = 46/64 (71%)
Frame = +2 / +2
Query: 314 AGSGFCDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGN 493
AGS FC KC VRCSKAS D CLK+CGICC CNCVPSGT GNKDECPCYRDM G
Sbjct: 2 AGSDFCTSKCPVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGK 181
Query: 494 RTRP 505
P
Sbjct: 182 GKCP 193
>gb|CO513284.1|CO513284 s13dSG37B1200093_129732 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 95.9 bits (203), Expect = 6e-021
Identities = 33/59 (55%), Positives = 38/59 (64%)
Frame = +2 / +2
Query: 329 CDGKCAVRCSKASRHDDCLKYCGICCATCNCVPSGTAGNKDECPCYRDMTTGHGNRTRP 505
C+GKC RCSKASR C++ C CC CNCVP GT+GN D CPCY +TT G P
Sbjct: 164 CNGKCGYRCSKASRQKICMRACNSCCKKCNCVPPGTSGNTDTCPCYASLTTHGGKLKCP 340
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,595,690
Number of Sequences: 7669
Number of extensions: 120194
Number of successful extensions: 1817
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 228838090
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)