TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448753.2.1
(537 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 105 7e-024
gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA bin... 105 7e-024
gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular tr... 100 3e-022
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 105 bits (223), Expect = 7e-024
Identities = 41/82 (50%), Positives = 58/82 (70%)
Frame = +2 / +2
Query: 146 KLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITA 325
+ FVGGL++ TD+ +L F++YG+++++KII DRE+GRSRGFGF+T+ I A
Sbjct: 98 RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 277
Query: 326 MDGKTLDGRNIRVNHANERTGG 391
M+G+ LDGRNI VN A R G
Sbjct: 278 MNGQDLDGRNITVNQAQSRGXG 343
>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
partial cds
Length = 318
Score = 105 bits (223), Expect = 7e-024
Identities = 41/82 (50%), Positives = 58/82 (70%)
Frame = +2 / +1
Query: 146 KLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXXITA 325
+ FVGGL++ TD+ +L F++YG+++++KII DRE+GRSRGFGF+T+ I A
Sbjct: 22 RCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDVIEA 201
Query: 326 MDGKTLDGRNIRVNHANERTGG 391
M+G+ LDGRNI VN A R G
Sbjct: 202 MNGQDLDGRNITVNQAQSRGSG 267
>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 468
Score = 99.6 bits (211), Expect = 3e-022
Identities = 40/85 (47%), Positives = 57/85 (67%)
Frame = +2 / +2
Query: 137 SSSKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTXXXXXXXX 316
SS+KLFVGGLS+ D+ SL+D F+ +G V E +I+ D++SGR+RGFGF+ ++
Sbjct: 134 SSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA 313
Query: 317 ITAMDGKTLDGRNIRVNHANERTGG 391
AM GK L GR +R+N A E+ G
Sbjct: 314 KDAMGGKALLGRPLRINFALEKPRG 388
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,018,788
Number of Sequences: 7669
Number of extensions: 37188
Number of successful extensions: 740
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 127977043
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)