TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.78
(943 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 153 3e-038
gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA bin... 147 2e-036
gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular tr... 96 3e-021
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 153 bits (329), Expect = 3e-038
Identities = 61/83 (73%), Positives = 74/83 (89%)
Frame = -2 / +2
Query: 831 SDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMR 652
+DVEYRCFVGGLAWATD+ +L AFS YGE+++SKII DRET RSRGFGFVTF+ E++M
Sbjct: 83 ADVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 262
Query: 651 NAIEGMNGKELDGRNITVNEAQS 583
+AIE MNG++LDGRNITVN+AQS
Sbjct: 263 DAIEAMNGQDLDGRNITVNQAQS 331
>gb|AF191305.1|AF191305 Medicago sativa glycine-rich RNA binding protein (GRP1) mRNA,
partial cds
Length = 318
Score = 147 bits (315), Expect = 2e-036
Identities = 59/83 (71%), Positives = 72/83 (86%)
Frame = -2 / +1
Query: 831 SDVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMR 652
+DVE RCFVGGLAWATD+ +L AFS YGE+++SKII DRET RSRGFGFVTF+ E++M
Sbjct: 7 ADVEDRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 186
Query: 651 NAIEGMNGKELDGRNITVNEAQS 583
+ IE MNG++LDGRNITVN+AQS
Sbjct: 187 DVIEAMNGQDLDGRNITVNQAQS 255
>gb|CO514732.1|CO514732 s13dSG55E0300023_328124 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 468
Score = 95.9 bits (203), Expect(2) = 3e-021
Identities = 37/76 (48%), Positives = 57/76 (75%)
Frame = -2 / +2
Query: 816 RCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEG 637
+ FVGGL+W+ D+ SL +AFS++G+V E +I+ D+++ R+RGFGFV FS E+A ++A +
Sbjct: 143 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 322
Query: 636 MNGKELDGRNITVNEA 589
M GK L GR + +N A
Sbjct: 323 MGGKALLGRPLRINFA 370
Score = 22.1 bits (42), Expect(2) = 3e-021
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -3 / +1
Query: 287 VCCCPSVF 264
+CCC S+F
Sbjct: 391 ICCCSSIF 414
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,140,722
Number of Sequences: 7669
Number of extensions: 61326
Number of successful extensions: 779
Number of sequences better than 1.0e-020: 4
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 248076270
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)