TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL16c05.xg.2.1
(687 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 179 3e-060
gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. v... 192 2e-057
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 147 1e-056
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 165 6e-056
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 165 6e-056
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 165 6e-056
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 174 4e-055
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 165 8e-055
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 165 1e-054
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 173 4e-051
gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedl... 172 8e-049
emb|X70879.1|HVMYB1G H.vulgare Myb1 gene 153 2e-048
gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcrip... 151 7e-047
gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedl... 156 9e-047
gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedl... 149 5e-046
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 145 2e-045
gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedl... 136 3e-045
gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare s... 150 3e-044
gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachi... 153 3e-043
gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hyd... 146 6e-043
gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm libra... 144 4e-042
gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. v... 143 6e-042
gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. v... 143 6e-042
gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm librar... 141 8e-042
gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm libra... 141 8e-042
gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm librar... 141 8e-042
gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm libra... 141 8e-042
gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm libra... 141 8e-042
gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm librar... 141 8e-042
gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm librar... 141 8e-042
gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedl... 142 1e-040
gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. v... 127 9e-040
gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedl... 156 2e-039
emb|X70880.1|HVMYB2G H.vulgare Myb2 gene 151 5e-039
gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedl... 155 1e-038
gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedl... 155 1e-038
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 153 7e-038
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 152 1e-037
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 152 1e-037
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 152 1e-037
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 152 1e-037
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 152 1e-037
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 152 1e-037
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 152 1e-037
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 153 2e-037
emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA 151 2e-037
gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedl... 151 2e-037
gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachi... 153 2e-037
gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. v... 117 9e-037
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 152 2e-036
gb|AV914947.1|AV914947 AV914947 K. Sato unpublished cDNA li... 124 2e-036
gb|BF064941.1|BF064941 HV_CEb0022A15f Hordeum vulgare seedl... 116 2e-035
gb|AL507585.1|AL507585 AL507585 Hordeum vulgare Barke devel... 122 2e-034
emb|X87690.1|HVRNAGAM1 H.vulgare mRNA for GAMyb protein 118 3e-034
gb|BF619532.3|BF619532 HVSMEc0003P10f Hordeum vulgare seedl... 132 4e-034
gb|CA014662.1|CA014662 HT11P22r HT Hordeum vulgare subsp. v... 118 4e-034
gb|CA013607.1|CA013607 HT08P20r HT Hordeum vulgare subsp. v... 118 4e-034
gb|CK123641.1|CK123641 BES1824104m18 BES1824 Hordeum vulgar... 144 5e-034
gb|CB877704.1|CB877704 HP05O05T HP Hordeum vulgare subsp. v... 118 7e-034
gb|CV063055.1|CV063055 BNEL86b3 Barley EST endosperm librar... 131 9e-034
gb|CA003603.1|CA003603 HS14P22r HS Hordeum vulgare subsp. v... 143 9e-034
gb|BG369720.1|BG369720 HVSMEi0025K10f Hordeum vulgare 20 DA... 118 6e-033
gb|CB876695.1|CB876695 HP02B11T HP Hordeum vulgare subsp. v... 120 8e-033
gb|CA019900.1|CA019900 HV13K14r HV Hordeum vulgare subsp. v... 113 8e-033
gb|BI958189.1|BI958189 HVSMEn0013M24f Hordeum vulgare rachi... 139 1e-032
gb|AY008692.1| Hordeum vulgare transcription factor GAMyb (... 118 4e-032
gb|BI957410.1|BI957410 HVSMEn0009G13f Hordeum vulgare rachi... 127 4e-030
gb|CV053597.1|CV053597 BNEL101a5 Barley EST endosperm libra... 131 5e-030
gb|BQ753632.1|BQ753632 EBan01_SQ004_M23_R anther, yellow st... 103 6e-030
gb|BQ764651.1|BQ764651 EBca01_SQ004_C14_R carpel, pre-anthe... 108 8e-030
gb|CA027463.1|CA027463 HZ59A03r HZ Hordeum vulgare subsp. v... 105 2e-029
gb|CK123590.1|CK123590 BES1824104i24 BES1824 Hordeum vulgar... 127 8e-029
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 101 5e-028
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 101 5e-028
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 101 5e-028
gb|AV920069.1|AV920069 AV920069 K. Sato unpublished cDNA li... 64 5e-028
gb|BF626054.2|BF626054 HVSMEa0015H17f Hordeum vulgare seedl... 104 7e-028
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 100 2e-027
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 117 4e-027
gb|AL507948.1|AL507948 AL507948 Hordeum vulgare Barke devel... 95 6e-027
gb|BQ467188.1|BQ467188 HS02O24r HS Hordeum vulgare subsp. v... 119 2e-026
gb|BM443593.2|BM443593 EBro02_SQ005_M21_R root, 3 week, hyd... 116 1e-025
gb|BQ466900.1|BQ466900 HS01O24T HS Hordeum vulgare subsp. v... 113 8e-025
gb|BG343954.1|BG343954 HVSMEg0007D14f Hordeum vulgare pre-a... 112 2e-024
gb|BI779364.2|BI779364 EBro01_SQ003_M18_R root, 3 week, hyd... 80 2e-024
gb|BF627413.1|BF627413 HVSMEb0004M17f Hordeum vulgare seedl... 103 1e-021
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 98 6e-021
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 179 bits (385), Expect(2) = 3e-060
Identities = 65/80 (81%), Positives = 78/80 (97%)
Frame = +2 / +2
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K++L++GLWSPEEDEKLMNHI K+G+GCWSSVPK+AGL+RCGKSCRLRWINYLRPDLKRG
Sbjct: 218 KKRLKRGLWSPEEDEKLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYLRPDLKRG 397
Query: 488 AFAQDEEDLIIELHAVLGNR 547
AF+Q+EEDLII LH++LGN+
Sbjct: 398 AFSQEEEDLIIHLHSILGNK 457
Score = 99.6 bits (211), Expect(2) = 5e-031
Identities = 48/98 (48%), Positives = 58/98 (59%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V ED V +DDEV +L E LEV PQ+VYPPQP L APLK G+ APAA+A+L V
Sbjct: 454 VAEDGVXVDDEVLLLLREGAPLEVRPQVVYPPQPAALPAPLKACNLGDGAPAAVAVLGNV 275
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAPT 251
+H+ L+LLR PE Q LL +R H PT
Sbjct: 274 VHQLLVLLRRPEAALQPLLRPSRPLRHAAGRLRRHEPT 161
Score = 73.0 bits (153), Expect(2) = 3e-060
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
SQIAAQLPGRTDNE+KN WNS IK LRQ+GIDP T
Sbjct: 461 SQIAAQLPGRTDNEVKNFWNSFIKKKLRQRGIDPAT 568
Score = 54.7 bits (113), Expect(2) = 5e-031
Identities = 26/43 (60%), Positives = 27/43 (62%)
Frame = -1 / -2
Query: 672 SXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI*XXXL 544
S WV GSMP LM EF +FL SLSV PGSCAAI* L
Sbjct: 579 SGLWVAGSMPRWRSFFLMKEFQKFLTSLSVRPGSCAAI*DHLL 451
>gb|BU998112.1|BU998112 HI10A14r HI Hordeum vulgare subsp. vulgare cDNA clone HI10A14
5-PRIME, mRNA sequence
Length = 580
Score = 192 bits (413), Expect(2) = 2e-057
Identities = 71/87 (81%), Positives = 80/87 (91%)
Frame = +2 / +1
Query: 287 GRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 466
G HSCC KQK+R+GLWSPEEDEKL+ +IT HGHGCWSSVP+ AGLQRCGKSCRLRWINYL
Sbjct: 64 GHHSCCNKQKVRRGLWSPEEDEKLVKYITAHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 243
Query: 467 RPDLKRGAFAQDEEDLIIELHAVLGNR 547
RPDLKRG+F+Q+EE LI+ELH VLGNR
Sbjct: 244 RPDLKRGSFSQEEEALIVELHRVLGNR 324
Score = 94.1 bits (199), Expect(2) = 4e-024
Identities = 46/87 (52%), Positives = 46/87 (52%)
Frame = -1 / -3
Query: 546 LFPRTACXXXXXXXXSWANAPLLRSGLR*FIHLSLQLFPHL*SPASLGTELQQPWPCFVM 367
LFP T S PLLRSGLR* IH SLQL PHL SPA LGTELQQPWPC VM
Sbjct: 323 LFPSTLWSSTMRASSSCEKLPLLRSGLR*LIHRSLQLLPHLCSPACLGTELQQPWPCAVM 144
Query: 366 XXXXXXXXXXXXXXXXXFCL*QQECLP 286
FCL QQE P
Sbjct: 143 YLTSFSSSSGDHRPLLTFCLLQQEWXP 63
Score = 50.6 bits (104), Expect(2) = 2e-057
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGI 649
+QIA LPGRTDNE+KN WNS IK L + +
Sbjct: 328 AQIAKHLPGRTDNEVKNFWNSTIKKKLISQAV 423
Score = 36.8 bits (74), Expect(2) = 4e-024
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 624 LMXEFHRFLISLSVLPGSCAAI 559
LM EF +F SLSVLPG C AI
Sbjct: 398 LMVEFQKFFTSLSVLPGRCLAI 333
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 147 bits (316), Expect(3) = 1e-056
Identities = 54/65 (83%), Positives = 63/65 (96%)
Frame = +2 / +3
Query: 353 KLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQDEEDLIIELHA 532
KLMNHI K+G+GCWSSVPK+AGL+RCGKSCRLRWINYLRPDLKRGAF+Q+EEDLII LH+
Sbjct: 183 KLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIHLHS 362
Query: 533 VLGNR 547
+LGN+
Sbjct: 363 ILGNK 377
Score = 82.6 bits (174), Expect(3) = 1e-030
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = -3 / -2
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V ED V++DDEV +L E LEV PQ+VYPPQP L APLK G+ APAA+A+L V
Sbjct: 374 VAEDGVEVDDEVLLLLREGAPLEVRPQVVYPPQPAALPAPLKACNLGDGAPAAVAVLGNV 195
Query: 364 IHE 356
+H+
Sbjct: 194 VHQ 186
Score = 73.9 bits (155), Expect(3) = 1e-056
Identities = 31/43 (72%), Positives = 33/43 (76%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXA 682
SQIAAQLPGRTDNE+KN WNS IK LRQ+GIDP T L A
Sbjct: 381 SQIAAQLPGRTDNEVKNFWNSFIKKKLRQRGIDPATHKPLAPA 509
Score = 56.5 bits (117), Expect(3) = 1e-030
Identities = 27/47 (57%), Positives = 29/47 (61%)
Frame = -1 / -3
Query: 684 SAXVSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI*XXXL 544
+A S WV GSMP LM EF +FL SLSV PGSCAAI* L
Sbjct: 511 AAGASGLWVAGSMPRWRSFFLMKEFQKFLTSLSVRPGSCAAI*DHLL 371
Score = 36.8 bits (74), Expect(3) = 1e-056
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +2 / +2
Query: 308 KQKLRKGLWSPEEDEK 355
K++L++GLWSPEEDEK
Sbjct: 137 KKRLKRGLWSPEEDEK 184
Score = 31.3 bits (62), Expect(3) = 1e-030
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2 / -2
Query: 356 VSHPPQGTRAPFSASACSSKNASPSQRNAEPGSSNQTHRAYR 231
+S PP TR SAS+ S AS +R A+ +N RA R
Sbjct: 185 LSRPPPATRGRASASSSSLPAASTCRRPAKTTRTNAQWRAVR 60
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 165 bits (354), Expect(2) = 6e-056
Identities = 62/78 (79%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
K+RKGLWSPEEDEKL NHI +HG GCWSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 101 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 280
Query: 494 AQDEEDLIIELHAVLGNR 547
+Q EED I+ LH +LGNR
Sbjct: 281 SQQEEDHIVALHQILGNR 334
Score = 72.5 bits (152), Expect(2) = 6e-056
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXAD 685
SQIA+ LPGRTDNEIKN WNS IK LRQ+GIDP T + AD
Sbjct: 338 SQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPMASAD 469
Score = 71.6 bits (150), Expect(2) = 6e-021
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V ED V+ DD V +LGE +LEV ++V PP+ L+A ++ E G+ APAA A+ V
Sbjct: 331 VAEDLVERDDVVLLLLGEAAALEVGAEVVDPPEAAALAAAVQRGEPGDGAPAADAVTDDV 152
Query: 364 IHEFLILLRGPEPLSQL 314
+ E L+LL P+PL+ L
Sbjct: 151 VVELLVLLGRPQPLADL 101
Score = 48.7 bits (100), Expect(2) = 6e-021
Identities = 25/47 (53%), Positives = 26/47 (55%)
Frame = -1 / -2
Query: 684 SAXVSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI*XXXL 544
SA V GSMP C LM F +FLISLSV PG C AI* L
Sbjct: 468 SAEAMGLCVAGSMPCCRSFFLMQLFQKFLISLSVRPGRCDAI*DHLL 328
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 165 bits (354), Expect(2) = 6e-056
Identities = 62/78 (79%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
K+RKGLWSPEEDEKL NHI +HG GCWSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 125 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 304
Query: 494 AQDEEDLIIELHAVLGNR 547
+Q EED I+ LH +LGNR
Sbjct: 305 SQQEEDHIVALHQILGNR 358
Score = 72.5 bits (152), Expect(2) = 6e-056
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXAD 685
SQIA+ LPGRTDNEIKN WNS IK LRQ+GIDP T + AD
Sbjct: 362 SQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPMASAD 493
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 165 bits (354), Expect(2) = 6e-056
Identities = 62/78 (79%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
K+RKGLWSPEEDEKL NHI +HG GCWSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 116 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 295
Query: 494 AQDEEDLIIELHAVLGNR 547
+Q EED I+ LH +LGNR
Sbjct: 296 SQQEEDHIVALHQILGNR 349
Score = 72.5 bits (152), Expect(2) = 6e-056
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXAD 685
SQIA+ LPGRTDNEIKN WNS IK LRQ+GIDP T + AD
Sbjct: 353 SQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPMASAD 484
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 174 bits (375), Expect(2) = 4e-055
Identities = 62/85 (72%), Positives = 75/85 (88%)
Frame = +2 / +3
Query: 293 HSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRP 472
H CC KQK+++GLWSPEEDEKL+++IT HGH CWS+VPK AGLQRCGKSCRLRWINYLRP
Sbjct: 54 HHCCSKQKVKRGLWSPEEDEKLLSYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYLRP 233
Query: 473 DLKRGAFAQDEEDLIIELHAVLGNR 547
DLKRG F++ EE I+++H +LGNR
Sbjct: 234 DLKRGTFSEQEERTILDVHRILGNR 308
Score = 78.5 bits (165), Expect(2) = 1e-023
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V +D+V ++D +L E +LEV ++V PP+P L+A L P G+ APAA+AM V
Sbjct: 305 VAQDAVDVEDGALLLLREGAALEVRTEVVDPPEPAALAAAL*PGVLGDGAPAAVAMRRDV 126
Query: 364 IHEFLILLRGPEPLSQLLLVAARMP 290
E L+L RGP P LLL AA +P
Sbjct: 125 AEELLVLFRGP*PPLHLLLAAAVVP 51
Score = 60.2 bits (125), Expect(2) = 4e-055
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXL 673
+QIA LPGRTDNE+KN WNS IK L +G+DP T L
Sbjct: 312 AQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGLDPKTHNLL 431
Score = 51.0 bits (105), Expect(2) = 1e-023
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = -1 / -2
Query: 663 WVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
WVLGS P + LM EF +FL SLSV PG C AI
Sbjct: 421 WVLGSRPCAMSFFLMHEFQKFLTSLSVRPGRCLAI 317
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 165 bits (354), Expect(2) = 8e-055
Identities = 62/78 (79%), Positives = 68/78 (87%)
Frame = +2 / +2
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
K+RKGLWSPEEDEKL NHI +HG GCWSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 29 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 208
Query: 494 AQDEEDLIIELHAVLGNR 547
+Q EED I+ LH +LGNR
Sbjct: 209 SQQEEDHIVALHQILGNR 262
Score = 68.9 bits (144), Expect(2) = 8e-055
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
SQIA+ LPGRTDNEIKN WNS IK LRQ+GIDP T
Sbjct: 266 SQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPAT 373
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 165 bits (354), Expect(2) = 1e-054
Identities = 62/78 (79%), Positives = 68/78 (87%)
Frame = +2 / +3
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
K+RKGLWSPEEDEKL NHI +HG GCWSSVP+LA L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 1101 KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 1280
Query: 494 AQDEEDLIIELHAVLGNR 547
+Q EED I+ LH +LGNR
Sbjct: 1281 SQQEEDHIVALHQILGNR 1334
Score = 72.5 bits (152), Expect(2) = 1e-054
Identities = 30/44 (68%), Positives = 33/44 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLTXAD 685
SQIA+ LPGRTDNEIKN WNS IK LRQ+GIDP T + AD
Sbjct: 1492 SQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPMASAD 1623
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 173 bits (373), Expect(2) = 4e-051
Identities = 66/80 (82%), Positives = 73/80 (91%)
Frame = +2 / +2
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
+QKLRKGLWSPEEDEKL NHI ++G GCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG
Sbjct: 131 QQKLRKGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 310
Query: 488 AFAQDEEDLIIELHAVLGNR 547
+F+Q EED I+ LH +LGNR
Sbjct: 311 SFSQQEEDAIVGLHEILGNR 370
Score = 93.2 bits (197), Expect(2) = 7e-023
Identities = 43/82 (52%), Positives = 55/82 (67%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
VP+D +Q DD V +L E P L+V Q+V PPQP L+APL+ E G+ APA A+ V
Sbjct: 367 VPQDLMQADDGVLLLLREAPPLQVGAQVVDPPQPAALAAPLQTGELGHGAPAPDAVADDV 188
Query: 364 IHEFLILLRGPEPLSQLLLVAA 299
+ E L+LL PEPL+QLLL AA
Sbjct: 187 VVELLVLLGRPEPLAQLLLDAA 122
Score = 47.8 bits (98), Expect(2) = 4e-051
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNS 616
SQIA+ LPGRTDNEIKN WNS
Sbjct: 374 SQIASHLPGRTDNEIKNFWNS 436
Score = 33.6 bits (67), Expect(2) = 7e-023
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3 / -1
Query: 613 VP*ILDLIISPPWQLRCNLR 554
VP +LDL++ P Q+RCNLR
Sbjct: 433 VPEVLDLVVRPARQVRCNLR 374
>gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006O07f, mRNA sequence
Length = 556
Score = 172 bits (370), Expect(2) = 8e-049
Identities = 64/83 (77%), Positives = 77/83 (92%)
Frame = +2 / +3
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K++L++GLWSPEED KLMNHI K+G+GCWSSVPK+AGL+RCGKSCRLRWINYLRPDLKRG
Sbjct: 141 KKRLKRGLWSPEED*KLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYLRPDLKRG 320
Query: 488 AFAQDEEDLIIELHAVLGNRXXS 556
AF+Q+EEDLII LH++L N+ S
Sbjct: 321 AFSQEEEDLIIHLHSILRNKVVS 389
Score = 98.7 bits (209), Expect(2) = 4e-024
Identities = 47/98 (47%), Positives = 59/98 (60%)
Frame = -3 / -3
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V ED V+++DEV +L E LEV PQ+VYPPQP L APLK G+ APAA+A+L V
Sbjct: 377 VAEDGVEVNDEVLLLLREGAPLEVRPQVVYPPQPAALPAPLKACNLGDGAPAAVAVLGNV 198
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAPT 251
+H+ L+LLR PE Q LL +R H PT
Sbjct: 197 VHQLLVLLRRPEAALQPLLRPSRPLRHAAGRLRRHEPT 84
Score = 41.4 bits (84), Expect(2) = 8e-049
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKN 604
SQIAAQLPGRTDNE+KN
Sbjct: 385 SQIAAQLPGRTDNEVKN 435
Score = 32.2 bits (64), Expect(2) = 4e-024
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1 / -3
Query: 606 RFLISLSVLPGSCAAI* 556
+FL SLSV PGSCAAI*
Sbjct: 437 KFLTSLSVRPGSCAAI* 387
>emb|X70879.1|HVMYB1G H.vulgare Myb1 gene
Length = 2587
Score = 153 bits (328), Expect(2) = 2e-048
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EED++L +I HG GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1002 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 1181
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ +E++LII+LH++LGN+
Sbjct: 1182 LRPDLKRGNFSHEEDELIIKLHSLLGNK 1265
Score = 62.9 bits (131), Expect(2) = 2e-048
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +2 / +2
Query: 533 VLGNRXXSQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
+LG R S IA +LPGRTDNEIKN WN+ I+ L +GIDP T
Sbjct: 1394 LLGARRWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGIDPVT 1522
>gb|AY672068.1| Hordeum vulgare subsp. vulgare myb transcription factor mRNA,
complete cds
Length = 1542
Score = 151 bits (325), Expect(2) = 7e-047
Identities = 58/78 (74%), Positives = 67/78 (85%)
Frame = +2 / +2
Query: 314 KLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 493
KLRKGLWSPEEDE+L+ ++ + G G WS V + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct: 176 KLRKGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 355
Query: 494 AQDEEDLIIELHAVLGNR 547
+ EEDLI+ LHA+LGNR
Sbjct: 356 SPHEEDLIVNLHAILGNR 409
Score = 55.6 bits (115), Expect(2) = 7e-047
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLR 637
SQIAA+LPGRTDNEIKN WNS IK L+
Sbjct: 413 SQIAARLPGRTDNEIKNFWNSTIKKRLK 496
>gb|BF620286.3|BF620286 HVSMEc0019F08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0019F08f, mRNA sequence
Length = 690
Score = 156 bits (336), Expect(2) = 9e-047
Identities = 59/88 (67%), Positives = 69/88 (78%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L+KG W+ EEDEKL+ HI +HGHG W ++P AGLQRCGKSCRLRW NY
Sbjct: 23 MGRSPCCDKVGLKKGPWTTEEDEKLLAHIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNY 202
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPD+KRG F+ EE II+LHA+LGNR
Sbjct: 203 LRPDIKRGKFSLQEEQTIIQLHALLGNR 286
Score = 50.1 bits (103), Expect(2) = 9e-047
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA L RTDNEIKN WN+ +K L + GIDP T
Sbjct: 290 SAIATHLSRRTDNEIKNYWNTHLKKRLAKMGIDPVT 397
>gb|BF259477.2|BF259477 HVSMEf0019D12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019D12f, mRNA sequence
Length = 577
Score = 149 bits (319), Expect(2) = 5e-046
Identities = 55/88 (62%), Positives = 70/88 (79%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR + L+KG W+ EEDEKLM++I KHGHG W ++P+LAGL RCGKSCRLRW NY
Sbjct: 84 MGRPPSSDENGLKKGPWTSEEDEKLMSYIQKHGHGSWRALPQLAGLNRCGKSCRLRWTNY 263
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
L+PD+KRG F+Q+EE I++LH VLGN+
Sbjct: 264 LKPDIKRGKFSQEEEQTILQLHTVLGNK 347
Score = 88.6 bits (187), Expect(2) = 5e-026
Identities = 38/87 (43%), Positives = 54/87 (62%)
Frame = -3 / -3
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V +D VQL+D + F+LGE PSL+V Q+V P P L+ P++ + +PA+MAML V
Sbjct: 344 VAKDGVQLEDGLLFLLGELPSLDVRLQVVGPS*PAALTTPVQACKLRKGSPASMAMLLDV 165
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPH 284
HE L+ L P L + +L+ R PPH
Sbjct: 164 AHELLVFLTSPGALLEAILITRRWPPH 84
Score = 55.6 bits (115), Expect(2) = 5e-046
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IA LPGRTDNEIKN WN+ ++ L + GIDP T
Sbjct: 351 SAIAKHLPGRTDNEIKNFWNTHLRKKLIKMGIDPMT 458
Score = 48.7 bits (100), Expect(2) = 5e-026
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = -1 / -1
Query: 663 WVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
WV+GSMP + L F +FLISLSV PG C AI
Sbjct: 460 WVIGSMPILMSFFLRWVFQKFLISLSVRPGRCFAI 356
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 145 bits (312), Expect(2) = 2e-045
Identities = 54/88 (61%), Positives = 67/88 (76%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
+GR CC K +++G W+PEED KL+++IT+HG W +PK AGLQRCGKSCRLRW NY
Sbjct: 13 LGRIPCCEKDNVKRGQWTPEEDNKLLSYITQHGTRNWRLIPKNAGLQRCGKSCRLRWTNY 192
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLK G F EE II+LH+V+GNR
Sbjct: 193 LRPDLKHGEFTDAEEQTIIKLHSVVGNR 276
Score = 57.0 bits (118), Expect(2) = 2e-045
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S IAAQLPGRTDN++KN WN+ +K L GIDP T
Sbjct: 280 SVIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPIT 387
>gb|BF617142.2|BF617142 HVSMEc0014M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014M02f, mRNA sequence
Length = 771
Score = 136 bits (291), Expect(2) = 3e-045
Identities = 52/88 (59%), Positives = 66/88 (75%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR K+ KG W+ EED++L+ +I +G GCW S+PK AGL RCGKSCRLRW+NY
Sbjct: 36 MGRSPG*EKEHTNKGAWTTEEDQRLIAYIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNY 215
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F D ++LII LH++LGN+
Sbjct: 216 LRPDLKRGNFTDD*DELIIRLHSLLGNK 299
Score = 84.0 bits (177), Expect(2) = 6e-021
Identities = 40/97 (41%), Positives = 59/97 (60%)
Frame = -3 / -2
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V E +V DDE+ V+GE +LEV ++V+P + L+A + G RAPAA+A+ V
Sbjct: 296 VAE*AV*TDDELVLVVGEVAALEVGAEVVHPAEAAALAAAQQARRLGQRAPAALAVGPDV 117
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAP 254
+ L+LLRGP PL + L++AR PPH ++ AP
Sbjct: 116 GDQPLVLLRGPRPLVGVFLLSARRPPHAGRSDSILAP 6
Score = 65.7 bits (137), Expect(2) = 3e-045
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNTXXXLT 676
S IA QLPGRTDNEIKN WN+ IK L +G+DPNT LT
Sbjct: 303 SLIAGQLPGRTDNEIKNYWNTHIKRKLLSRGMDPNTHRPLT 425
Score = 36.3 bits (73), Expect(2) = 6e-021
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = -1 / -3
Query: 675 VSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
V+ V GS+P LM F FLISLSVLPGS A+
Sbjct: 424 VNGRCVFGSIPRDRSLRLMCVFQ*FLISLSVLPGSWPAM 308
>gb|BM816803.1|BM816803 HC114B11_SK.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC114B11_SK.ab1 similar to myb protein homolog - rice
gi|1946265|emb|CAA72217.1| (Y11414) myb [Oryza sativa],
mRNA sequence
Length = 879
Score = 150 bits (323), Expect(2) = 3e-044
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
V MGR CC K L++G W+ EED L+ HI +HGH W ++P AGL RCGKSCRLRWI
Sbjct: 158 VAMGRSPCCEKMGLKRGPWTAEEDMTLVAHIEQHGHSNWRALPNQAGLLRCGKSCRLRWI 337
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPD+KRG F +EED II+LHA+LGNR
Sbjct: 338 NYLRPDIKRGNFTSEEEDAIIQLHAMLGNR 427
Score = 47.8 bits (98), Expect(2) = 3e-044
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLR 637
S IAA+LPGRTDNEIKN+W++ +K L+
Sbjct: 431 STIAARLPGRTDNEIKNVWHTHLKKRLQ 514
>gb|BI956816.1|BI956816 HVSMEn0005H11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005H11f, mRNA sequence
Length = 917
Score = 153 bits (329), Expect(2) = 3e-043
Identities = 59/89 (66%), Positives = 67/89 (75%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
EMGR CC K L+KG W+ EED KL+ + HGH CW VPKLAGL RCGKSCRLRW N
Sbjct: 105 EMGRQPCCEKVGLKKGPWTAEEDXKLVAFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTN 284
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPDLKRG + DEE L+I+LH+ LGNR
Sbjct: 285 YLRPDLKRGLLSDDEERLVIDLHSQLGNR 371
Score = 41.4 bits (84), Expect(2) = 3e-043
Identities = 17/31 (54%), Positives = 23/31 (74%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKG 646
S+IAA+LPGRTD IKN WN+ I+ ++ G
Sbjct: 469 SKIAARLPGRTDT*IKNHWNTHIRE*AQEDG 561
>gb|BM443626.2|BM443626 EBro02_SQ005_P07_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_P07 5', mRNA sequence
Length = 523
Score = 146 bits (313), Expect(2) = 6e-043
Identities = 56/90 (62%), Positives = 67/90 (74%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
V MGR C K L++G W+ EED L+ HI +HGH W ++P AGL RCGKSCRLRWI
Sbjct: 128 VAMGRSPCSEKMGLKRGPWTAEEDMTLVAHIEQHGHSNWRALPNQAGLLRCGKSCRLRWI 307
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPD+KRG F +EED II+LHA+LGNR
Sbjct: 308 NYLRPDIKRGNFTSEEEDAIIQLHAMLGNR 397
Score = 47.8 bits (98), Expect(2) = 6e-043
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLR 637
S IAA+LPGRTDNEIKN+W++ +K L+
Sbjct: 401 STIAARLPGRTDNEIKNVWHTHLKKRLQ 484
>gb|CV058923.1|CV058923 BNEL42e10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42e10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 717
Score = 144 bits (308), Expect(2) = 4e-042
Identities = 52/76 (68%), Positives = 65/76 (85%)
Frame = +2 / +1
Query: 320 RKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQ 499
RKGLWSPEED+KL ++I +HGHGCWS++P AGLQR GKSC+LRWINYLRP LK G F+
Sbjct: 139 RKGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCKLRWINYLRPGLKHGMFSP 318
Query: 500 DEEDLIIELHAVLGNR 547
+EE+ ++ LHAVLGN+
Sbjct: 319 EEEETVMSLHAVLGNK 366
Score = 47.3 bits (97), Expect(2) = 4e-042
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IA LPGRTDNE+KN WNS +K + PN+
Sbjct: 370 SRIARHLPGRTDNEVKNYWNSYLKKRVEGGKGAPNS 477
>gb|CB882601.1|CB882601 HL02F10w HL Hordeum vulgare subsp. vulgare cDNA clone HL02F10
3-PRIME, mRNA sequence
Length = 610
Score = 143 bits (307), Expect(2) = 6e-042
Identities = 52/76 (68%), Positives = 64/76 (84%)
Frame = +2 / +1
Query: 320 RKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQ 499
RKGLWSPEED+KL ++I +HGHGCWS++P AGLQR GKSCRLRWINYLRP LK G F+
Sbjct: 151 RKGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSA 330
Query: 500 DEEDLIIELHAVLGNR 547
+EE+ ++ LHA LGN+
Sbjct: 331 EEEETVMSLHAALGNK 378
Score = 47.3 bits (97), Expect(2) = 6e-042
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IA LPGRTDNE+KN WNS +K + PN+
Sbjct: 382 SRIARHLPGRTDNEVKNYWNSYLKKRVEGGKGAPNS 489
>gb|CA002506.1|CA002506 HS07L12r HS Hordeum vulgare subsp. vulgare cDNA clone HS07L12
5-PRIME, mRNA sequence
Length = 514
Score = 143 bits (307), Expect(2) = 6e-042
Identities = 52/76 (68%), Positives = 64/76 (84%)
Frame = +2 / +1
Query: 320 RKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFAQ 499
RKGLWSPEED+KL ++I +HGHGCWS++P AGLQR GKSCRLRWINYLRP LK G F+
Sbjct: 166 RKGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGMFSA 345
Query: 500 DEEDLIIELHAVLGNR 547
+EE+ ++ LHA LGN+
Sbjct: 346 EEEETVMSLHAALGNK 393
Score = 47.3 bits (97), Expect(2) = 6e-042
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IA LPGRTDNE+KN WNS +K + PN+
Sbjct: 397 SRIARHLPGRTDNEVKNYWNSYLKKRVEGGKGAPNS 504
>gb|CV062831.1|CV062831 BNEL83e5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL83e5 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 588
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +2
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 188 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 367
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 368 MFSREEEETVMGLHAALGNK 427
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 431 SQIAQHLPGRTDNEVKNYWNSYLK 502
>gb|CV062377.1|CV062377 BNEL79d11 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL79d11 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 558
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +3
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 162 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 341
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 342 MFSREEEETVMGLHAALGNK 401
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 405 SQIAQHLPGRTDNEVKNYWNSYLK 476
>gb|CV056818.1|CV056818 BNEL20h7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL20h7 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 514
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +3
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 162 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 341
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 342 MFSREEEETVMGLHAALGNK 401
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 405 SQIAQHLPGRTDNEVKNYWNSYLK 476
>gb|CV058774.1|CV058774 BNEL40g12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL40g12 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 488
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +3
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 162 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 341
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 342 MFSREEEETVMGLHAALGNK 401
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 405 SQIAQHLPGRTDNEVKNYWNSYLK 476
>gb|CV056415.1|CV056415 BNEL17E10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL17E10 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 479
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +1
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 82 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 261
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 262 MFSREEEETVMGLHAALGNK 321
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 325 SQIAQHLPGRTDNEVKNYWNSYLK 396
>gb|CV058910.1|CV058910 BNEL42d1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL42d1 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +1
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 82 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 261
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 262 MFSREEEETVMGLHAALGNK 321
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 325 SQIAQHLPGRTDNEVKNYWNSYLK 396
>gb|CV063729.1|CV063729 BNEL92e6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL92e6 5' similar to
OSJNBb0039L24.8, mRNA sequence
Length = 478
Score = 141 bits (303), Expect(2) = 8e-042
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +2 / +1
Query: 308 KQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
K + RKGLWSPEED+KL + I +HGH CWS+VP AGLQR GKSCRLRWINYLRP LK G
Sbjct: 82 KAQHRKGLWSPEEDQKLRDFIVRHGHSCWSTVPVKAGLQRNGKSCRLRWINYLRPGLKHG 261
Query: 488 AFAQDEEDLIIELHAVLGNR 547
F+++EE+ ++ LHA LGN+
Sbjct: 262 MFSREEEETVMGLHAALGNK 321
Score = 48.7 bits (100), Expect(2) = 8e-042
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIK 625
SQIA LPGRTDNE+KN WNS +K
Sbjct: 325 SQIAQHLPGRTDNEVKNYWNSYLK 396
>gb|BE558747.2|BE558747 HV_CEb0020E02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020E02f, mRNA sequence
Length = 796
Score = 142 bits (304), Expect(2) = 1e-040
Identities = 53/88 (60%), Positives = 68/88 (77%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K L++G W+ EED+ L N+I +HG G W S+PK AGL RCGKSCRLRWINY
Sbjct: 211 MGRAPCCEKVGLKRGRWTAEEDDILANYIAQHGEGSWRSLPKNAGLLRCGKSCRLRWINY 390
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LR ++RG +++E+DLI++LHA LGNR
Sbjct: 391 LRDGVRRGNISKEEDDLIVKLHATLGNR 474
Score = 44.6 bits (91), Expect(2) = 1e-040
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXI 622
S IA+ LPGRTDNEIKN WNS +
Sbjct: 478 SLIASHLPGRTDNEIKNYWNSHL 546
>gb|CB883071.1|CB883071 HQ01B16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01B16
3-PRIME, mRNA sequence
Length = 535
Score = 127 bits (272), Expect(2) = 9e-040
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +2 / +1
Query: 299 CCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDL 478
C +Q L+KG W+PEED+ L++++ + G W +PKLAGL RCGKSCRLRW NYLRPD+
Sbjct: 118 CESRQGLKKGPWTPEEDKLLVDYVQANAPGNWRMLPKLAGLNRCGKSCRLRWTNYLRPDI 297
Query: 479 KRGAFAQDEEDLIIELHAVLGNR 547
KRG F +E I++LHA++GN+
Sbjct: 298 KRGPFTPEEHKSILQLHAIVGNK 366
Score = 56.1 bits (116), Expect(2) = 9e-040
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +2 / +1
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGI 649
S IAAQLPGRTDNEIKN WN+ +K LRQ +
Sbjct: 370 SMIAAQLPGRTDNEIKNYWNTNLKKQLRQAAL 465
>gb|BF259663.3|BF259663 HVSMEf0019O20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019O20f, mRNA sequence
Length = 528
Score = 156 bits (336), Expect(2) = 2e-039
Identities = 56/88 (63%), Positives = 70/88 (79%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EEDE+L+ H+ HG GCW S+P AGL RCGKSCRLRWINY
Sbjct: 68 MGRSPCCEKAHTNKGAWTREEDERLVAHVRAHGEGCWRSLPSAAGLLRCGKSCRLRWINY 247
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F++DE++LI++LH++LGN+
Sbjct: 248 LRPDLKRGNFSRDEDELIVKLHSLLGNK 331
Score = 25.4 bits (49), Expect(2) = 2e-039
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3 / +3
Query: 567 RSCQGGLIMRSRIYGTXXS 623
R+C+GG RSR GT S
Sbjct: 348 RACRGGRTTRSRTTGTRTS 404
>emb|X70880.1|HVMYB2G H.vulgare Myb2 gene
Length = 1093
Score = 151 bits (325), Expect(2) = 5e-039
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K+ KG W+ EED++L+ +I +G GCW S+PK AGL RCGKSCRLRW+NY
Sbjct: 646 MGRSPCCEKEHTNKGAWTKEEDQRLIAYIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNY 825
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F DE++LII LH++LGN+
Sbjct: 826 LRPDLKRGNFTDDEDELIIRLHSLLGNK 909
Score = 31.8 bits (63), Expect(2) = 5e-039
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2 / +2
Query: 554 SQIAAQLPGRTDNEI 598
S IA QLPGRTDNEI
Sbjct: 1049 SLIAGQLPGRTDNEI 1093
>gb|BG301022.1|BG301022 HVSMEb0019E16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019E16f, mRNA sequence
Length = 625
Score = 155 bits (333), Expect(2) = 1e-038
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
+ MGR CC K KG W+ EED++L+ +I HG GCW S+PK AGL RCGKSCRLRW+
Sbjct: 74 IGMGRSPCCEKAHTNKGAWTKEEDQRLIGYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWM 253
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG F D+++LII+LHA+LGN+
Sbjct: 254 NYLRPDLKRGNFTDDDDELIIKLHALLGNK 343
Score = 90.4 bits (191), Expect(2) = 1e-024
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V E+ V+LDDE+ V+GE +LEV ++V+P + L+A + G RAPAA+A+ V
Sbjct: 340 VAEEGVELDDELVVVVGEVAALEVRAEVVHPAEAAALAAAEEAGGLGQRAPAALAVGLDV 161
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAPTK 248
+ L+LL GP PL + L+AAR PPH + G P +
Sbjct: 160 ADQALVLLLGPSPLVGVRLLAARRPPHADDDAGYGGPAR 44
Score = 42.3 bits (86), Expect(2) = 1e-024
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = -1 / -2
Query: 684 SAXVSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
+A + V GSMP LM F FLISLSV PGSC AI
Sbjct: 477 AAALMGRCVCGSMPRLRSLRLMCVFQ*FLISLSVRPGSCPAI 352
Score = 24.4 bits (47), Expect(2) = 1e-038
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1 / +1
Query: 568 AAARED***DQESMELXHQXXXEAERH*SQH 660
AA R D DQE +E HQ RH H
Sbjct: 361 AAPRPDGQRDQELLEHAHQAQAPQPRHGPAH 453
>gb|BG301049.1|BG301049 HVSMEb0019G16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019G16f, mRNA sequence
Length = 624
Score = 155 bits (333), Expect(2) = 1e-038
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +2 / +2
Query: 278 VEMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWI 457
+ MGR CC K KG W+ EED++L+ +I HG GCW S+PK AGL RCGKSCRLRW+
Sbjct: 74 IGMGRSPCCEKAHTNKGAWTKEEDQRLIGYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWM 253
Query: 458 NYLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
NYLRPDLKRG F D+++LII+LHA+LGN+
Sbjct: 254 NYLRPDLKRGNFTDDDDELIIKLHALLGNK 343
Score = 90.4 bits (191), Expect(2) = 1e-024
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = -3 / -3
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V E+ V+LDDE+ V+GE +LEV ++V+P + L+A + G RAPAA+A+ V
Sbjct: 340 VAEEGVELDDELVVVVGEVAALEVRAEVVHPAEAAALAAAEEAGGLGQRAPAALAVGLDV 161
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAPTK 248
+ L+LL GP PL + L+AAR PPH + G P +
Sbjct: 160 ADQALVLLLGPSPLVGVRLLAARRPPHADDDAGYGGPAR 44
Score = 42.3 bits (86), Expect(2) = 1e-024
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = -1 / -1
Query: 684 SAXVSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
+A + V GSMP LM F FLISLSV PGSC AI
Sbjct: 477 AAALMGRCVCGSMPRLRSLRLMCVFQ*FLISLSVRPGSCPAI 352
Score = 24.4 bits (47), Expect(2) = 1e-038
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1 / +1
Query: 568 AAARED***DQESMELXHQXXXEAERH*SQH 660
AA R D DQE +E HQ RH H
Sbjct: 361 AAPRPDGQRDQELLEHAHQAQAPQPRHGPAH 453
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 153 bits (329), Expect(2) = 7e-038
Identities = 57/89 (64%), Positives = 71/89 (79%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI +HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 126 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHRHGHGNWRALPKQAGLLRCGKSCRLRWIN 305
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 306 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 392
Score = 99.1 bits (210), Expect(2) = 6e-025
Identities = 46/92 (50%), Positives = 59/92 (64%)
Frame = -3 / -1
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 401 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 222
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P P Q L+AAR PPHL
Sbjct: 221 PVDVCDQDLVLLRRPGPPLQAHLLAARRPPHL 126
Score = 34.5 bits (69), Expect(2) = 6e-025
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 451 HTFLISLSVLPGSLAAI 401
Score = 23.5 bits (45), Expect(2) = 7e-038
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +1
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 400 RLPPGCRGGRTTRSRTCGTPTS 465
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 122 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 301
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 302 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 388
Score = 100 bits (212), Expect(2) = 3e-025
Identities = 46/92 (50%), Positives = 59/92 (64%)
Frame = -3 / -3
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 397 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 218
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P P Q L+AAR PPHL
Sbjct: 217 AVDVCDQDLVLLRRPGPPLQAHLLAARRPPHL 122
Score = 34.5 bits (69), Expect(2) = 3e-025
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 447 HTFLISLSVLPGSLAAI 397
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +3
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 396 RLPPGCRGGRTTRSRTCGTPTS 461
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 112 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 291
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 292 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 378
Score = 100 bits (212), Expect(2) = 3e-025
Identities = 46/92 (50%), Positives = 59/92 (64%)
Frame = -3 / -1
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 387 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 208
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P P Q L+AAR PPHL
Sbjct: 207 AVDVCDQDLVLLRRPGPPLQAHLLAARRPPHL 112
Score = 34.5 bits (69), Expect(2) = 3e-025
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 437 HTFLISLSVLPGSLAAI 387
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +2
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 386 RLPPGCRGGRTTRSRTCGTPTS 451
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 116 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 295
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 296 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 382
Score = 94.5 bits (200), Expect(2) = 1e-023
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -3
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 391 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 212
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P Q L+A R PPHL
Sbjct: 211 AVDVCDQDLVLLRRPGAPLQAHLLATRRPPHL 116
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 441 HTFLISLSVLPGSLAAI 391
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +3
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 390 RLPPGCRGGRTTRSRTCGTPTS 455
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +3
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 129 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 308
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 309 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 395
Score = 94.5 bits (200), Expect(2) = 1e-023
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -2
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 404 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 225
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P Q L+A R PPHL
Sbjct: 224 AVDVCDQDLVLLRRPGAPLQAHLLATRRPPHL 129
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -3
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 454 HTFLISLSVLPGSLAAI 404
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +1
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 403 RLPPGCRGGRTTRSRTCGTPTS 468
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +1
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 127 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 306
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 307 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 393
Score = 100 bits (212), Expect(2) = 3e-025
Identities = 46/92 (50%), Positives = 59/92 (64%)
Frame = -3 / -1
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 402 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 223
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P P Q L+AAR PPHL
Sbjct: 222 AVDVCDQDLVLLRRPGPPLQAHLLAARRPPHL 127
Score = 34.5 bits (69), Expect(2) = 3e-025
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 452 HTFLISLSVLPGSLAAI 402
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +2
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 401 RLPPGCRGGRTTRSRTCGTPTS 466
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 128 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 307
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 308 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 394
Score = 94.5 bits (200), Expect(2) = 1e-023
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -1
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 403 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 224
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P Q L+A R PPHL
Sbjct: 223 AVDVCDQDLVLLRRPGAPLQAHLLATRRPPHL 128
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -2
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 453 HTFLISLSVLPGSLAAI 403
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +3
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 402 RLPPGCRGGRTTRSRTCGTPTS 467
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 152 bits (327), Expect(2) = 1e-037
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 128 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 307
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 308 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 394
Score = 94.5 bits (200), Expect(2) = 1e-023
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -3
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 403 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 224
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P Q L+A R PPHL
Sbjct: 223 AVDVCDQDLVLLRRPGAPLQAHLLATRRPPHL 128
Score = 34.5 bits (69), Expect(2) = 1e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -1
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 453 HTFLISLSVLPGSLAAI 403
Score = 23.5 bits (45), Expect(2) = 1e-037
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3 / +3
Query: 558 KLQRSCQGGLIMRSRIYGTXXS 623
+L C+GG RSR GT S
Sbjct: 402 RLPPGCRGGRTTRSRTCGTPTS 467
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 153 bits (328), Expect(2) = 2e-037
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EED++L +I HG GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 212 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 391
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ +E++LII+LH++LGN+
Sbjct: 392 LRPDLKRGNFSHEEDELIIKLHSLLGNK 475
Score = 22.6 bits (43), Expect(2) = 2e-037
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3 / +3
Query: 573 CQGGLIMRSRIYGTXXS 623
C+GG RSR GT S
Sbjct: 498 CRGGRTTRSRTTGTRTS 548
>emb|X70876.1|HVMYB2 H.vulgare myb2 mRNA
Length = 1102
Score = 151 bits (325), Expect(2) = 2e-037
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +2 / +2
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K+ KG W+ EED++L+ +I +G GCW S+PK AGL RCGKSCRLRW+NY
Sbjct: 44 MGRSPCCEKEHTNKGAWTKEEDQRLIAYIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNY 223
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F DE++LII LH++LGN+
Sbjct: 224 LRPDLKRGNFTDDEDELIIRLHSLLGNK 307
Score = 88.6 bits (187), Expect(2) = 5e-023
Identities = 41/97 (42%), Positives = 60/97 (61%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V E +V+ DDE+ V+GE +LEV ++V+P + L+A + G RAPAA+A+ V
Sbjct: 304 VAEQAVEADDELVLVVGEVAALEVGAEVVHPAEAAALAAAQQARRLGQRAPAALAVGPDV 125
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAP 254
+ L+LL GP PL +LL+AAR PPH ++ AP
Sbjct: 124 GDQPLVLLLGPRPLVGVLLLAARRPPHAGRSDSILAP 14
Score = 38.6 bits (78), Expect(2) = 5e-023
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1 / -2
Query: 675 VSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
VS V GSMP LM F FLISLSVLPGS A+
Sbjct: 432 VSGRCVCGSMPRERSLRLMCVFQ*FLISLSVLPGSWPAM 316
Score = 24.0 bits (46), Expect(2) = 2e-037
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1 / +1
Query: 544 QXXXSNCSAAARED***DQESMELXHQXXXEAERH*SQH 660
Q S+ AA +D DQE +E HQ RH H
Sbjct: 301 QQVVSHRRPAAGQDGQRDQELLEHAHQAQAPLPRHGPAH 417
>gb|BF627287.2|BF627287 HVSMEb0004H07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004H07f, mRNA sequence
Length = 756
Score = 151 bits (325), Expect(2) = 2e-037
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +2 / +1
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K+ KG W+ EED++L+ +I +G GCW S+PK AGL RCGKSCRLRW+NY
Sbjct: 52 MGRSPCCEKEHTNKGAWTKEEDQRLIAYIRANGEGCWRSLPKAAGLLRCGKSCRLRWMNY 231
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F DE++LII LH++LGN+
Sbjct: 232 LRPDLKRGNFTDDEDELIIRLHSLLGNK 315
Score = 86.8 bits (183), Expect(2) = 2e-022
Identities = 41/97 (42%), Positives = 60/97 (61%)
Frame = -3 / -1
Query: 544 VPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAMLCYV 365
V E +V+ DDE+ V+GE +LEV ++V+P + L+A + G RAPAA+A+ V
Sbjct: 312 VAE*AVEADDELVLVVGEVAALEVGAEVVHPAEAAALAAAQQARRLGQRAPAALAVGPDV 133
Query: 364 IHEFLILLRGPEPLSQLLLVAARMPPHLNAMQNLGAP 254
+ L+LL GP PL +LL+AAR PPH ++ AP
Sbjct: 132 GDQPLVLLLGPRPLVGVLLLAARRPPHAGRSDSILAP 22
Score = 38.6 bits (78), Expect(2) = 2e-022
Identities = 22/39 (56%), Positives = 23/39 (58%)
Frame = -1 / -2
Query: 675 VSXXWVLGSMPFCLXXXLMXEFHRFLISLSVLPGSCAAI 559
VS V GSMP LM F FLISLSVLPGS A+
Sbjct: 440 VSGRCVCGSMPRERSLRLMCVFQ*FLISLSVLPGSWPAM 324
Score = 24.0 bits (46), Expect(2) = 2e-037
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1 / +3
Query: 544 QXXXSNCSAAARED***DQESMELXHQXXXEAERH*SQH 660
Q S+ AA +D DQE +E HQ RH H
Sbjct: 309 QQVVSHRRPAAGQDGQRDQELLEHAHQAQAPLPRHGPAH 425
>gb|BI960347.1|BI960347 HVSMEn0024E22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024E22f, mRNA sequence
Length = 669
Score = 153 bits (328), Expect(2) = 2e-037
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2 / +3
Query: 284 MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINY 463
MGR CC K KG W+ EED++L +I HG GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 72 MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 251
Query: 464 LRPDLKRGAFAQDEEDLIIELHAVLGNR 547
LRPDLKRG F+ +E++LII+LH++LGN+
Sbjct: 252 LRPDLKRGNFSHEEDELIIKLHSLLGNK 335
Score = 22.6 bits (43), Expect(2) = 2e-037
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3 / +1
Query: 573 CQGGLIMRSRIYGTXXS 623
C+GG RSR GT S
Sbjct: 358 CRGGRTTRSRTTGTRTS 408
>gb|BQ471469.1|BQ471469 HV02I08r HV Hordeum vulgare subsp. vulgare cDNA clone HV02I08
5-PRIME, mRNA sequence
Length = 593
Score = 117 bits (251), Expect(3) = 9e-037
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = +2 / +2
Query: 320 RKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRG 487
RKGLWSPEED+KL ++I +HGHGCWS++P AGLQR GKSCRLRWINYLRP LK G
Sbjct: 161 RKGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHG 328
Score = 47.3 bits (97), Expect(3) = 9e-037
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2 / +3
Query: 554 SQIAAQLPGRTDNEIKNLWNSXIKXXLRQKGIDPNT 661
S+IA LPGRTDNE+KN WNS +K + PN+
Sbjct: 393 SRIARHLPGRTDNEVKNYWNSYLKKRVEGGKGAPNS 500
Score = 26.3 bits (51), Expect(3) = 9e-037
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2 / +3
Query: 500 DEEDLIIELHAVLGNR 547
+EE+ ++ LHA LGN+
Sbjct: 342 EEEETVMSLHAALGNK 389
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 152 bits (327), Expect = 2e-036
Identities = 57/89 (64%), Positives = 70/89 (78%)
Frame = +2 / +2
Query: 281 EMGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWIN 460
+MGR CC K L++G W+PEED+ L+ HI HGHG W ++PK AGL RCGKSCRLRWIN
Sbjct: 128 KMGRAPCCEKMGLKRGPWTPEEDKILVAHIHSHGHGNWRALPKQAGLLRCGKSCRLRWIN 307
Query: 461 YLRPDLKRGAFAQDEEDLIIELHAVLGNR 547
YLRPD+KRG F+ +EE II+LH +LGNR
Sbjct: 308 YLRPDIKRGNFSDEEEQSIIQLHQLLGNR 394
Score = 94.5 bits (200), Expect(2) = 2e-023
Identities = 44/92 (47%), Positives = 57/92 (61%)
Frame = -3 / -2
Query: 556 RXXSVPEDSVQLDDEVFFVLGECPSLEVWPQIVYPPQPTTLSAPLKPSEFGNRAPAAMAM 377
R SV E VQLDD + ++GE +L+V PQ+V PP+P L+AP KP G RAP A+A+
Sbjct: 403 RGPSVAEQLVQLDD*LLLLVGEVAALDVRPQVVDPPEPAALAAPQKPGLLGQRAPVAVAV 224
Query: 376 LCYVIHEFLILLRGPEPLSQLLLVAARMPPHL 281
V + L+LLR P Q L+A R PPHL
Sbjct: 223 AVDVCDQDLVLLRRPGAPLQAHLLATRRPPHL 128
Score = 34.5 bits (69), Expect(2) = 2e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1 / -3
Query: 609 HRFLISLSVLPGSCAAI 559
H FLISLSVLPGS AAI
Sbjct: 453 HTFLISLSVLPGSMAAI 403
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 320,834,379
Number of Sequences: 312970
Number of extensions: 5003701
Number of successful extensions: 50273
Number of sequences better than 1.0e-020: 114
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7507757493
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)