TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL506696.1|AL506696 AL506696 Hordeum vulgare Barke devel... 408 e-113
gb|BF629454.2|BF629454 HVSMEb0012H12f Hordeum vulgare seedl... 382 e-108
gb|CB879021.1|CB879021 HP10K19T HP Hordeum vulgare subsp. v... 353 7e-097
gb|AV913801.1|AV913801 AV913801 K. Sato unpublished cDNA li... 325 1e-089
gb|BU990541.1|BU990541 HF25F18r HF Hordeum vulgare subsp. v... 329 2e-089
gb|CA032535.1|CA032535 HX13F08r HX Hordeum vulgare subsp. v... 311 3e-084
gb|AV922941.1|AV922941 AV922941 K. Sato unpublished cDNA li... 309 2e-083
gb|AV924620.1|AV924620 AV924620 K. Sato unpublished cDNA li... 309 2e-083
gb|BU975068.1|BU975068 HB29P21r BC Hordeum vulgare subsp. v... 294 4e-079
gb|AV916829.1|AV916829 AV916829 K. Sato unpublished cDNA li... 290 1e-077
gb|BU975172.1|BU975172 HB30F01r BC Hordeum vulgare subsp. v... 252 3e-066
gb|BU998572.1|BU998572 HI11H17r HI Hordeum vulgare subsp. v... 246 1e-064
gb|CA004210.1|CA004210 HS16O15r HS Hordeum vulgare subsp. v... 219 2e-056
gb|BQ766883.1|BQ766883 EBro08_SQ007_K09_R root, 3 week, dro... 196 2e-049
gb|BJ472477.1|BJ472477 BJ472477 K. Sato unpublished cDNA li... 164 9e-040
gb|BQ761130.1|BQ761130 EBro04_SQ004_D16_R root, 3 week, sal... 163 1e-039
gb|AV921413.1|AV921413 AV921413 K. Sato unpublished cDNA li... 152 3e-036
gb|AV929715.1|AV929715 AV929715 K. Sato unpublished cDNA li... 152 3e-036
gb|BM375790.2|BM375790 EBem06_SQ004_G19_R embryo, 21 DPA, n... 135 3e-031
gb|AV924629.1|AV924629 AV924629 K. Sato unpublished cDNA li... 102 1e-030
gb|AW982502.2|AW982502 HVSMEg0003H02f Hordeum vulgare pre-a... 125 3e-028
gb|BI956261.1|BI956261 HVSMEn0001L13f Hordeum vulgare rachi... 116 9e-027
gb|BU972357.1|BU972357 HB21G20r BC Hordeum vulgare subsp. v... 117 1e-025
gb|AV922126.1|AV922126 AV922126 K. Sato unpublished cDNA li... 102 3e-021
>gb|AL506696.1|AL506696 AL506696 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY03P14T 5',
mRNA sequence
Length = 700
Score = 408 bits (886), Expect = e-113
Identities = 178/213 (83%), Positives = 190/213 (89%)
Frame = +1 / +2
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 59 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 238
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 239 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 418
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGE 579
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYGVTKTALFGLTKALA E
Sbjct: 419 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGLTKALATE 598
Query: 580 MGPDTRVNCIAPGFVPTRFASFLTENETIRKEL 678
MGP+TRVNCIAPGF PTRFA FLT NETIR EL
Sbjct: 599 MGPNTRVNCIAPGFXPTRFAGFLTTNETIRNEL 697
Score = 316 bits (685), Expect = 1e-085
Identities = 149/204 (73%), Positives = 152/204 (74%)
Frame = -1 / -2
Query: 647 RKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITD 468
RK A RVG PGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITD
Sbjct: 666 RKPAKRVGXNPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITD 487
Query: 467 DPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPKLLTAVS 288
DPF I+ALTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK LTAVS
Sbjct: 486 DPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLSTEGFAAALETTISICPKFLTAVS 307
Query: 287 MRLLRCCASETWQTAPTAVIPLALSPSTASFTFFCLREEMTTXXXXXXXXXXXXXXXXIV 108
MR LRC A ETWQTAPT VIP AL PSTAS TFFCLREEMTT V
Sbjct: 306 MRCLRCSALETWQTAPTTVIPFALRPSTASSTFFCLREEMTTAAPSRPRRSAMASPMPCV 127
Query: 107 DAVTMATFPSRRRHLTSIAAQADL 36
+AVT ATFPSRRRHLTSIA A L
Sbjct: 126 EAVTTATFPSRRRHLTSIAGLAVL 55
Score = 206 bits (445), Expect = 1e-052
Identities = 84/142 (59%), Positives = 99/142 (69%)
Frame = +3 / +1
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 265 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 444
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*L 605
S +G C++ EG+ICD FFNCWL S + +VWC+KD W +EGSC+*DG +Y C*L
Sbjct: 445 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*L 624
Query: 606 YSPWFCSYTVC*FPHRK*DH*E 671
YS W SYT C FPH *DH*+
Sbjct: 625 YSSWVXSYTFCWFPHN**DH*K 690
Score = 188 bits (406), Expect(2) = 6e-068
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -1
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 481 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 302
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 301 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 122
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 121 RHDGHLPLQTPALDLHRRPRR 59
Score = 146 bits (314), Expect = 2e-034
Identities = 77/129 (59%), Positives = 86/129 (66%)
Frame = -2 / -3
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V* Q Q LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 677 H*L*GNQQNV*XQTQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 498
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS* 299
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S*
Sbjct: 497 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS* 318
Query: 298 RPSR*GSCA 272
RP R*G+CA
Sbjct: 317 RPCR*GACA 291
Score = 89.5 bits (189), Expect(2) = 6e-068
Identities = 38/62 (61%), Positives = 45/62 (72%)
Frame = -3 / -1
Query: 678 KLFPNGLIFCEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLFWIV 499
+L NGLI CEETSK CR K R YTVNT I +HL+SKSLR+ K+ LC+TIH S F I+
Sbjct: 697 ELISNGLISCEETSKTCRXKPRSYTVNTGIWAHLSSKSLRKAKKGGLCNTIHR*SCFRII 518
Query: 498 TS 493
S
Sbjct: 517 AS 512
>gb|BF629454.2|BF629454 HVSMEb0012H12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0012H12f, mRNA sequence
Length = 870
Score = 382 bits (828), Expect(2) = e-108
Identities = 166/197 (84%), Positives = 178/197 (90%)
Frame = +1 / +3
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 15 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 194
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 195 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 374
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGE 579
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYGVTKTALFGLTKALA E
Sbjct: 375 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGLTKALATE 554
Query: 580 MGPDTRVNCIAPGFVPT 630
MGP+TRVNCIAPGFVPT
Sbjct: 555 MGPNTRVNCIAPGFVPT 605
Score = 314 bits (679), Expect = 7e-085
Identities = 147/198 (74%), Positives = 150/198 (75%)
Frame = -1 / -3
Query: 629 VGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITDDPFXXX 450
VGTKPGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITDDPF
Sbjct: 604 VGTKPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITDDPFLKC 425
Query: 449 XXXXXXXXIEALTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPKLLTAVSMRLLRC 270
I+ALTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK LTAVSMR LRC
Sbjct: 424 GAASCSRRIDALTLISHSLSRTGSFISSMLSTEGFAAALETTISICPKFLTAVSMRCLRC 245
Query: 269 CASETWQTAPTAVIPLALSPSTASFTFFCLREEMTTXXXXXXXXXXXXXXXXIVDAVTMA 90
A ETWQTAPT VIP AL PSTAS TFFCLREEMTT V+AVT A
Sbjct: 244 SALETWQTAPTTVIPFALRPSTASSTFFCLREEMTTAAPSRPRRSAMASPMPCVEAVTTA 65
Query: 89 TFPSRRRHLTSIAAQADL 36
TFPSRRRHLTSIA A L
Sbjct: 64 TFPSRRRHLTSIAGLAVL 11
Score = 192 bits (414), Expect = 2e-048
Identities = 76/128 (59%), Positives = 90/128 (70%)
Frame = +3 / +2
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 221 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 400
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*L 605
S +G C++ EG+ICD FFNCWL S + +VWC+KD W +E SC+*DG +Y C*L
Sbjct: 401 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFWPYESSCY*DGPKYPC*L 580
Query: 606 YSPWFCSY 629
YS WFCSY
Sbjct: 581 YSSWFCSY 604
Score = 188 bits (406), Expect(2) = 2e-060
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -2
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 437 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 258
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 257 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 78
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 77 RHDGHLPLQTPALDLHRRPRR 15
Score = 135 bits (290), Expect = 3e-031
Identities = 71/119 (59%), Positives = 80/119 (67%)
Frame = -2 / -1
Query: 628 *EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK**SQMTPSVGE 449
*EQNQ LYS*H Y PS QE S* Q+ +SL*HHT L+ D +QQLKK SQM PS
Sbjct: 603 *EQNQELYS*HGYLGPSQ*QELS*GQKGRSL*HHTSIKLLQDYSQQLKKLLSQMIPSSNV 424
Query: 448 EQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS*RPSR*GSCA 272
Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S*RP R*G+CA
Sbjct: 423 VQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS*RPCR*GACA 247
Score = 64.8 bits (135), Expect(2) = 2e-060
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = -3 / -2
Query: 627 RNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
RNKTR YTVNT I +HL+SKS R+ K+ LC+TIH S F I+ S
Sbjct: 602 RNKTRSYTVNTGIWAHLSSKSFRKAKKGGLCNTIHR*SCFRIIAS 468
Score = 31.8 bits (63), Expect(2) = e-108
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1 / +2
Query: 619 FVPTRFASFLTENETIRKELNERTKLK 699
F R A FLT ET+R EL ERT LK
Sbjct: 593 FCSYRXAWFLTTYETLRNELFERTFLK 673
>gb|CB879021.1|CB879021 HP10K19T HP Hordeum vulgare subsp. vulgare cDNA clone HP10K19
5-PRIME, mRNA sequence
Length = 571
Score = 353 bits (766), Expect = 7e-097
Identities = 155/186 (83%), Positives = 167/186 (89%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 13 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 192
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 193 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 372
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGE 579
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYGVTKTALFGLTKALA E
Sbjct: 373 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGLTKALATE 552
Query: 580 MGPDTR 597
MGP+TR
Sbjct: 553 MGPNTR 570
Score = 288 bits (623), Expect = 4e-077
Identities = 135/185 (72%), Positives = 138/185 (74%)
Frame = -1 / -3
Query: 596 RVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEA 417
RV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITDDPF I+A
Sbjct: 569 RVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDA 390
Query: 416 LTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPT 237
LTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT
Sbjct: 389 LTLISHSLSRTGSFISSMLSTEGFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPT 210
Query: 236 AVIPLALSPSTASFTFFCLREEMTTXXXXXXXXXXXXXXXXIVDAVTMATFPSRRRHLTS 57
VIP AL PSTAS TFFCLREEMTT V+AVT ATFPSRRRHLTS
Sbjct: 209 TVIPFALRPSTASSTFFCLREEMTTAAPSRPRRSAMASPMPCVEAVTTATFPSRRRHLTS 30
Query: 56 IAAQA 42
IA A
Sbjct: 29 IAGLA 15
Score = 188 bits (406), Expect(2) = 2e-054
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -2
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 435 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 256
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 255 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 76
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 75 RHDGHLPLQTPALDLHRRPRR 13
Score = 167 bits (360), Expect = 7e-041
Identities = 67/116 (57%), Positives = 81/116 (69%)
Frame = +3 / +3
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 219 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 398
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRY 593
S +G C++ EG+ICD FFNCWL S + +VWC+KD W +EGSC+*DG +Y
Sbjct: 399 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKY 566
Score = 123 bits (264), Expect = 1e-027
Identities = 63/109 (57%), Positives = 72/109 (66%)
Frame = -2 / -1
Query: 598 HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK**SQMTPSVGEEQHPE*EG*K 419
H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK SQM PS Q P E *
Sbjct: 571 HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKLLSQMIPSSNVVQRPAVEE*M 392
Query: 418 P*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS*RPSR*GSCA 272
* *YP A +E LS VCY QKDL+QHWRQ+Y Q+S*RP R*G+CA
Sbjct: 391 L*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS*RPCR*GACA 245
Score = 44.6 bits (91), Expect(2) = 2e-054
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = -3 / -2
Query: 597 TSIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
T I +HL+SKSLR+ K+ LC+TIH S F I+ S
Sbjct: 570 TGIWAHLSSKSLRKAKKGGLCNTIHR*SCFRIIAS 466
>gb|AV913801.1|AV913801 AV913801 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f13 5', mRNA sequence
Length = 599
Score = 325 bits (704), Expect(2) = 1e-089
Identities = 140/185 (75%), Positives = 152/185 (82%)
Frame = +1 / +1
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
+KGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 43 SKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 222
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGE 579
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYGVTKTALFGLTKALA E
Sbjct: 223 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGLTKALATE 402
Query: 580 MGPDTRVNCIAPGFVPTRFASFLTENETIRKELNERTKLKRLGTVEDMXXXXXXXXXXXX 759
MGP+TRVNCIAPGFVPTRFA FLT NETIR EL ER+ LKRLG+VEDM
Sbjct: 403 MGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAAAFLASDDA 582
Query: 760 XYITA 774
+ITA
Sbjct: 583 SFITA 597
Score = 255 bits (552), Expect = 2e-067
Identities = 123/184 (66%), Positives = 126/184 (68%)
Frame = -1 / -1
Query: 776 SAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXXVRKLANRVGTKPGAIQLT 597
SAVM D ST+PN VRK A RVGTKPGAIQLT
Sbjct: 599 SAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLVVRKPAKRVGTKPGAIQLT 420
Query: 596 RVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEA 417
RV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITDDPF I+A
Sbjct: 419 RVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDA 240
Query: 416 LTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPT 237
LTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT
Sbjct: 239 LTLISHSLSRTGSFISSMLSTEGFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPT 60
Query: 236 AVIP 225
VIP
Sbjct: 59 TVIP 48
Score = 246 bits (532), Expect = 1e-064
Identities = 104/177 (58%), Positives = 122/177 (68%)
Frame = +3 / +3
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 69 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 248
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*L 605
S +G C++ EG+ICD FFNCWL S + +VWC+KD W +EGSC+*DG +Y C*L
Sbjct: 249 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*L 428
Query: 606 YSPWFCSYTVC*FPHRK*DH*ERA*REDQA*EIGYCGRHGCGCGFSGV*RRIIHYG* 776
YS WFCSYT C FPH *DH*+ A RE+ *EIG GRHG F G+ R I+HY *
Sbjct: 429 YSSWFCSYTFCWFPHN**DH*K*AHREEHT*EIG*RGRHGFSRRFPGIRRCILHYS* 599
Score = 152 bits (326), Expect(2) = 2e-040
Identities = 79/129 (61%), Positives = 88/129 (68%)
Frame = -2 / -2
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*EQNQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 481 H*L*GNQQNV*EQNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 302
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS* 299
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S*
Sbjct: 301 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS* 122
Query: 298 RPSR*GSCA 272
RP R*G+CA
Sbjct: 121 RPCR*GACA 95
Score = 130 bits (279), Expect(2) = 1e-055
Identities = 58/94 (61%), Positives = 68/94 (72%)
Frame = -3 / -3
Query: 774 SRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIFCEETSKPCRNKTRGYTVNT 595
S N C+V Q+S SHVFH+TQSLK PL +L NGLI CEETSK CRNKTR YTVNT
Sbjct: 597 SCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLISCEETSKTCRNKTRSYTVNT 418
Query: 594 SIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
I +HL+SKSLR+ K+ LC+TIH S F I+ S
Sbjct: 417 GIWAHLSSKSLRKAKKGGLCNTIHR*SCFRIIAS 316
Score = 106 bits (226), Expect(2) = 1e-055
Identities = 47/82 (57%), Positives = 57/82 (69%)
Frame = -3 / -3
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 285 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 106
Query: 282 ALALLCVGDVADGTNRGDTLGP 217
LAL VGDVADG + D L P
Sbjct: 105 VLALFGVGDVADGPHNSDPL*P 40
Score = 34.1 bits (68), Expect(2) = 2e-040
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2 / -2
Query: 760 MRRQTPEKPQPQPCLPQYPIS* 695
M R+ P K + +PCLP+YPIS*
Sbjct: 583 MHRRMPGKRRLKPCLPRYPIS* 518
Score = 25.4 bits (49), Expect(2) = 1e-089
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +3
Query: 187 KNVNEAVEGLRAKG 228
K +EAVEGLR KG
Sbjct: 9 KTXHEAVEGLRVKG 50
>gb|BU990541.1|BU990541 HF25F18r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F18
5-PRIME, mRNA sequence
Length = 552
Score = 329 bits (712), Expect = 2e-089
Identities = 144/173 (83%), Positives = 155/173 (89%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 34 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 213
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 214 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 393
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGL 558
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYGVTKTALFGL
Sbjct: 394 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGL 552
Score = 266 bits (575), Expect = 2e-070
Identities = 125/174 (71%), Positives = 128/174 (73%)
Frame = -1 / -2
Query: 557 RPKRAVFVTPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEALTLISHSLSRTDS 378
RPKRAVFVTPYI SGL*PAIEEIIITDDPF I+ALTLISHSLSRT S
Sbjct: 551 RPKRAVFVTPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDALTLISHSLSRTGS 372
Query: 377 FISSMLSTEGFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPTAVIPLALSPSTAS 198
FISSMLSTEGFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT VIP AL PSTAS
Sbjct: 371 FISSMLSTEGFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPTTVIPFALRPSTAS 192
Query: 197 FTFFCLREEMTTXXXXXXXXXXXXXXXXIVDAVTMATFPSRRRHLTSIAAQADL 36
TFFCLREEMTT V+AVT ATFPSRRRHLTSIA A L
Sbjct: 191 STFFCLREEMTTAAPSRPRRSAMASPMPCVEAVTTATFPSRRRHLTSIAGLAVL 30
Score = 188 bits (406), Expect(2) = 1e-048
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -1
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 456 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 277
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 276 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 97
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 96 RHDGHLPLQTPALDLHRRPRR 34
Score = 145 bits (312), Expect = 3e-034
Identities = 59/103 (57%), Positives = 70/103 (67%)
Frame = +3 / +3
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 240 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 419
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLW 554
S +G C++ EG+ICD FFNCWL S + +VWC+KD W
Sbjct: 420 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFW 548
Score = 107 bits (228), Expect = 1e-022
Identities = 54/94 (57%), Positives = 63/94 (67%)
Frame = -2 / -3
Query: 553 QREQSL*HHTLSILVLDCNQQLKK**SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLS 374
Q+ +SL*HHT L+ D +QQLKK SQM PS Q P E * * *YP A +E LS
Sbjct: 547 QKGRSL*HHTSIKLLQDYSQQLKKLLSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLS 368
Query: 373 FQVCYLQKDLRQHWRQEYLCAQSS*RPSR*GSCA 272
VCY QKDL+QHWRQ+Y Q+S*RP R*G+CA
Sbjct: 367 SLVCYPQKDLQQHWRQQYQYVQNS*RPCR*GACA 266
Score = 24.9 bits (48), Expect(2) = 1e-048
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3 / -1
Query: 558 ETKESSLCDTIHCQSLFWIVTS 493
+ K+ LC+TIH S F I+ S
Sbjct: 552 KAKKGGLCNTIHR*SCFRIIAS 487
>gb|CA032535.1|CA032535 HX13F08r HX Hordeum vulgare subsp. vulgare cDNA clone HX13F08
5-PRIME, mRNA sequence
Length = 663
Score = 311 bits (674), Expect = 3e-084
Identities = 135/177 (76%), Positives = 145/177 (81%)
Frame = +1 / +3
Query: 298 VKSFGHIDILVSNAAANPSVDSILEMKESVLDKLWDINVKASILLIQDAAPHLRKGXXXX 477
+++FGHIDI+VSNAAANPSVDSILEMKE VLDKLWDINVKASILL+QDAAPHLRKG
Sbjct: 102 MQNFGHIDIVVSNAAANPSVDSILEMKEPVLDKLWDINVKASILLLQDAAPHLRKGSSVI 281
Query: 478 XXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTEN 657
AGYNPE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPGFVPTRFA FLT N
Sbjct: 282 IISSIAGYNPEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTN 461
Query: 658 ETIRKELNERTKLKRLGTVEDMXXXXXXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
ETIR EL ER+ LKRLG+VEDM +ITAETIVVAGG QSRL*IWLK
Sbjct: 462 ETIRNELIERSILKRLGSVEDMASAAAFLASDDASFITAETIVVAGGTQSRL*IWLK 632
Score = 245 bits (529), Expect = 3e-064
Identities = 100/176 (56%), Positives = 121/176 (68%)
Frame = +3 / +2
Query: 303 ELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFYPSYSGCCSSPTEGVICDYY 482
E W + Y CLQCC KSFC *HT +ER S A+GY* Q Y S +G C++ EG+ICD
Sbjct: 107 EFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIYSSTAGRCTTFEEGIICDNN 286
Query: 483 FFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*D 662
FFNCWL S + +VWC+KD W +EGSC+*DG +Y C*LYS WFCSYT C FPH *D
Sbjct: 287 FFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**D 466
Query: 663 H*ERA*REDQA*EIGYCGRHGCGCGFSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
H*+ A RE+ *EIG GRHG F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 467 H*K*AHREEHT*EIG*RGRHGFSRRFPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 634
Score = 243 bits (524), Expect = 2e-063
Identities = 116/175 (66%), Positives = 121/175 (69%)
Frame = -1 / -3
Query: 830 NFSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXX 651
+FSQIYSLDC PPATT+VSAVM D ST+PN
Sbjct: 634 DFSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLV 455
Query: 650 VRKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIIT 471
VRK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIIT
Sbjct: 454 VRKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIIT 275
Query: 470 DDPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPK 306
DDPF I+ALTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK
Sbjct: 274 DDPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLSTEGFAAALETTISICPK 110
Score = 152 bits (327), Expect(2) = 2e-050
Identities = 70/113 (61%), Positives = 81/113 (71%)
Frame = -3 / -2
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 635 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 456
Query: 651 CEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
CEETSK CRNKTR YTVNT I +HL+SKSLR+ K+ LC+TIH S F I+ S
Sbjct: 455 CEETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKKGGLCNTIHR*SCFRIIAS 297
Score = 134 bits (288), Expect(2) = 1e-039
Identities = 71/119 (59%), Positives = 79/119 (66%)
Frame = -2 / -1
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*EQNQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 462 H*L*GNQQNV*EQNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 283
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS 302
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S
Sbjct: 282 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS 106
Score = 67.0 bits (140), Expect(2) = 2e-050
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = -3 / -2
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKAL 301
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K L
Sbjct: 266 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKIL 105
Score = 48.7 bits (100), Expect(2) = 1e-039
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2 / -1
Query: 829 TSARFTA*TAPLQQQQWFQP*CMMRRQTPEKPQPQPCLPQYPIS* 695
TSAR LQQQQ FQ * M R+ P K + +PCLP+YPIS*
Sbjct: 633 TSARSIVLIVFLQQQQLFQL**RMHRRMPGKRRLKPCLPRYPIS* 499
>gb|AV922941.1|AV922941 AV922941 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3a23 5', mRNA sequence
Length = 558
Score = 309 bits (669), Expect = 2e-083
Identities = 135/164 (82%), Positives = 146/164 (89%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 67 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 246
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 247 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 426
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYG 531
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYG
Sbjct: 427 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYG 558
Score = 245 bits (530), Expect = 2e-064
Identities = 116/165 (70%), Positives = 119/165 (72%)
Frame = -1 / -2
Query: 530 PYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLSTE 351
PYI SGL*PAIEEIIITDDPF I+ALTLISHSLSRT SFISSMLSTE
Sbjct: 557 PYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLSTE 378
Query: 350 GFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPTAVIPLALSPSTASFTFFCLREE 171
GFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT VIP AL PSTAS TFFCLREE
Sbjct: 377 GFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPTTVIPFALRPSTASSTFFCLREE 198
Query: 170 MTTXXXXXXXXXXXXXXXXIVDAVTMATFPSRRRHLTSIAAQADL 36
MTT V+AVT ATFPSRRRHLTSIA A L
Sbjct: 197 MTTAAPSRPRRSAMASPMPCVEAVTTATFPSRRRHLTSIAGLAVL 63
Score = 188 bits (406), Expect = 3e-047
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -1
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 489 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 310
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 309 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 130
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 129 RHDGHLPLQTPALDLHRRPRR 67
Score = 132 bits (283), Expect = 3e-030
Identities = 55/95 (57%), Positives = 65/95 (68%)
Frame = +3 / +3
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 273 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 452
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVW 530
S +G C++ EG+ICD FFNCWL S + +VW
Sbjct: 453 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVW 557
>gb|AV924620.1|AV924620 AV924620 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16e19 5', mRNA sequence
Length = 575
Score = 309 bits (669), Expect = 2e-083
Identities = 135/164 (82%), Positives = 146/164 (89%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 82 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 261
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKL 399
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKL
Sbjct: 262 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKL 441
Query: 400 WDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYNPEQGLTMYG 531
WDINVKASILL+QDAAPHLRKG AGYNPE L+MYG
Sbjct: 442 WDINVKASILLLQDAAPHLRKGSSVIIISSIAGYNPEAALSMYG 573
Score = 248 bits (535), Expect = 5e-065
Identities = 117/166 (70%), Positives = 120/166 (72%)
Frame = -1 / -1
Query: 533 TPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLST 354
TPYI SGL*PAIEEIIITDDPF I+ALTLISHSLSRT SFISSMLST
Sbjct: 575 TPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLST 396
Query: 353 EGFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPTAVIPLALSPSTASFTFFCLRE 174
EGFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT VIP AL PSTAS TFFCLRE
Sbjct: 395 EGFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPTTVIPFALRPSTASSTFFCLRE 216
Query: 173 EMTTXXXXXXXXXXXXXXXXIVDAVTMATFPSRRRHLTSIAAQADL 36
EMTT V+AVT ATFPSRRRHLTSIA A L
Sbjct: 215 EMTTAAPSRPRRSAMASPMPCVEAVTTATFPSRRRHLTSIAGLAVL 78
Score = 188 bits (406), Expect = 3e-047
Identities = 84/141 (59%), Positives = 96/141 (68%)
Frame = -3 / -3
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 504 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 325
Query: 282 ALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGEADPHRGR 103
LAL VGDVADG + D L PE LHRLVHV L EALGDGE+D RG
Sbjct: 324 VLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGESDALRGS 145
Query: 102 RHDGHLPLQTPALDIHRRAGR 40
RHDGHLPLQTPALD+HRR R
Sbjct: 144 RHDGHLPLQTPALDLHRRPRR 82
Score = 136 bits (292), Expect = 2e-031
Identities = 56/96 (58%), Positives = 66/96 (68%)
Frame = +3 / +3
Query: 246 RLPRLRRTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFY 425
RLPRL+R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y
Sbjct: 288 RLPRLQRRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIY 467
Query: 426 PSYSGCCSSPTEGVICDYYFFNCWLQSRTRIDNVWC 533
S +G C++ EG+ICD FFNCWL S + +VWC
Sbjct: 468 SSTAGRCTTFEEGIICDNNFFNCWL*S*SSFIDVWC 575
>gb|BU975068.1|BU975068 HB29P21r BC Hordeum vulgare subsp. vulgare cDNA clone HB29P21
5-PRIME, mRNA sequence
Length = 565
Score = 294 bits (637), Expect = 4e-079
Identities = 129/168 (76%), Positives = 136/168 (80%)
Frame = +1 / +2
Query: 325 LVSNAAANPSVDSILEMKESVLDKLWDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYN 504
+VSNAAANPSVDSILEMKE VLDKLWDINVKASILL+QDAAPHLRKG AGYN
Sbjct: 11 VVSNAAANPSVDSILEMKEPVLDKLWDINVKASILLLQDAAPHLRKGSSVIIISSIAGYN 190
Query: 505 PEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRKELNE 684
PE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR EL E
Sbjct: 191 PEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIE 370
Query: 685 RTKLKRLGTVEDMXXXXXXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
R+ LKRLG+VEDM +ITAETIVVAGG QSRL*IWLK
Sbjct: 371 RSILKRLGSVEDMASAAAFLASDDASFITAETIVVAGGTQSRL*IWLK 514
Score = 236 bits (509), Expect = 2e-061
Identities = 97/168 (57%), Positives = 117/168 (69%)
Frame = +3 / +1
Query: 327 CLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFYPSYSGCCSSPTEGVICDYYFFNCWLQS 506
CLQCC KSFC *HT +ER S A+GY* Q Y S +G C++ EG+ICD FFNCWL S
Sbjct: 13 CLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIYSSTAGRCTTFEEGIICDNNFFNCWL*S 192
Query: 507 RTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH*ERA*RE 686
+ +VWC+KD W +EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*+ A RE
Sbjct: 193 *SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH*K*AHRE 372
Query: 687 DQA*EIGYCGRHGCGCGFSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
+ *EIG GRHG F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 373 EHT*EIG*RGRHGFSRRFPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 516
Score = 229 bits (495), Expect = 2e-059
Identities = 111/169 (65%), Positives = 115/169 (68%)
Frame = -1 / -2
Query: 827 FSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXXV 648
FSQIYSLDC PPATT+VSAVM D ST+PN V
Sbjct: 513 FSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLVV 334
Query: 647 RKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITD 468
RK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITD
Sbjct: 333 RKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITD 154
Query: 467 DPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLSTEGFAAALETRI 321
DPF I+ALTLISHSLSRT SFISSMLSTEGFAAALET +
Sbjct: 153 DPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLSTEGFAAALETTL 7
Score = 151 bits (325), Expect(2) = 6e-048
Identities = 70/112 (62%), Positives = 80/112 (71%)
Frame = -3 / -1
Query: 828 LQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIFC 649
LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI C
Sbjct: 514 LQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLISC 335
Query: 648 EETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
EETSK CRNKTR YTVNT I +HL+SKSLR+ K+ LC+TIH S F I+ S
Sbjct: 334 EETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKKGGLCNTIHR*SCFRIIAS 179
Score = 127 bits (273), Expect(2) = 2e-037
Identities = 68/111 (61%), Positives = 74/111 (66%)
Frame = -2 / -3
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*EQNQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 344 H*L*GNQQNV*EQNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 165
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQ 326
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ
Sbjct: 164 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQ 12
Score = 59.7 bits (124), Expect(2) = 6e-048
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = -3 / -1
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGD 328
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD
Sbjct: 148 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGD 14
Score = 48.7 bits (100), Expect(2) = 2e-037
Identities = 25/45 (55%), Positives = 29/45 (64%)
Frame = -2 / -3
Query: 829 TSARFTA*TAPLQQQQWFQP*CMMRRQTPEKPQPQPCLPQYPIS* 695
TSAR LQQQQ FQ * M R+ P K + +PCLP+YPIS*
Sbjct: 515 TSARSIVLIVFLQQQQLFQL**RMHRRMPGKRRLKPCLPRYPIS* 381
>gb|AV916829.1|AV916829 AV916829 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19m12 5', mRNA sequence
Length = 468
Score = 290 bits (627), Expect = 1e-077
Identities = 125/153 (81%), Positives = 134/153 (87%)
Frame = +1 / +3
Query: 265 AQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEMKESVLDKLWDINVKASILLIQDA 444
A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEMKE VLDKLWDINVKASILL+QDA
Sbjct: 3 AEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEMKEPVLDKLWDINVKASILLLQDA 182
Query: 445 APHLRKGXXXXXXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFV 624
APHLRKG AGYNPE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPGFV
Sbjct: 183 APHLRKGSSVIIISSIAGYNPEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGFV 362
Query: 625 PTRFASFLTENETIRKELNERTKLKRLGTVEDM 723
PTRFA FLT NETIR EL ER+ LKRLG+VEDM
Sbjct: 363 PTRFAGFLTTNETIRNELIERSILKRLGSVEDM 461
Score = 222 bits (479), Expect = 3e-057
Identities = 92/154 (59%), Positives = 107/154 (69%)
Frame = +3 / +2
Query: 264 RTAAQEPHRDGRQELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFYPSYSGC 443
R AQ PHR GRQE W + Y CLQCC KSFC *HT +ER S A+GY* Q Y S +G
Sbjct: 2 RRTAQAPHRHGRQEFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIYSSTAGR 181
Query: 444 CSSPTEGVICDYYFFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFC 623
C++ EG+ICD FFNCWL S + +VWC+KD W +EGSC+*DG +Y C*LYS WFC
Sbjct: 182 CTTFEEGIICDNNFFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWFC 361
Query: 624 SYTVC*FPHRK*DH*ERA*REDQA*EIGYCGRHG 725
SYT C FPH *DH*+ A RE+ *EIG GRHG
Sbjct: 362 SYTFCWFPHN**DH*K*AHREEHT*EIG*RGRHG 463
Score = 221 bits (476), Expect = 7e-057
Identities = 106/150 (70%), Positives = 109/150 (72%)
Frame = -1 / -3
Query: 713 TVPNXXXXXXXXXXXXXXXXXVRKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFV 534
T+PN VRK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAVFV
Sbjct: 451 TLPNLLSMLLSMSSFLMVSLVVRKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAVFV 272
Query: 533 TPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLST 354
TPYI SGL*PAIEEIIITDDPF I+ALTLISHSLSRT SFISSMLST
Sbjct: 271 TPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLST 92
Query: 353 EGFAAALETRISMCPKLLTAVSMRLLRCCA 264
EGFAAALET IS+CPK LTAVSMR LRC A
Sbjct: 91 EGFAAALETTISICPKFLTAVSMRCLRCSA 2
Score = 152 bits (326), Expect(2) = 3e-038
Identities = 79/129 (61%), Positives = 88/129 (68%)
Frame = -2 / -1
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*EQNQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 396 H*L*GNQQNV*EQNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 217
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS* 299
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S*
Sbjct: 216 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS* 37
Query: 298 RPSR*GSCA 272
RP R*G+CA
Sbjct: 36 RPCR*GACA 10
Score = 123 bits (263), Expect(2) = 3e-047
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = -3 / -2
Query: 726 SHVFHSTQSLKLGPLVKLFPNGLIFCEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKE 547
SHVFH+TQSLK PL +L NGLI CEETSK CRNKTR YTVNT I +HL+SKSLR+ K+
Sbjct: 464 SHVFHATQSLKYAPLDELISNGLISCEETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKK 285
Query: 546 SSLCDTIHCQSLFWIVTS 493
LC+TIH S F I+ S
Sbjct: 284 GGLCNTIHR*SCFRIIAS 231
Score = 85.8 bits (181), Expect(2) = 3e-047
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = -3 / -2
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKALDGRLDE 283
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K LDGR+DE
Sbjct: 200 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKILDGRVDE 21
Query: 282 ALAL 271
LAL
Sbjct: 20 VLAL 9
Score = 26.7 bits (52), Expect(2) = 3e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -1
Query: 727 QPCLPQYPIS* 695
+PCLP+YPIS*
Sbjct: 465 KPCLPRYPIS* 433
>gb|BU975172.1|BU975172 HB30F01r BC Hordeum vulgare subsp. vulgare cDNA clone HB30F01
5-PRIME, mRNA sequence
Length = 414
Score = 252 bits (544), Expect = 3e-066
Identities = 109/133 (81%), Positives = 115/133 (86%)
Frame = +1 / +2
Query: 325 LVSNAAANPSVDSILEMKESVLDKLWDINVKASILLIQDAAPHLRKGXXXXXXXXXAGYN 504
+VSNAAANPSVDSILEMKE VLDKLWDINVKASILL+QDAAPHLRKG AGYN
Sbjct: 11 VVSNAAANPSVDSILEMKEPVLDKLWDINVKASILLLQDAAPHLRKGSSVIIISSIAGYN 190
Query: 505 PEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRKELNE 684
PE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR EL E
Sbjct: 191 PEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIE 370
Query: 685 RTKLKRLGTVEDM 723
R+ LKRLG+VEDM
Sbjct: 371 RSILKRLGSVEDM 409
Score = 191 bits (412), Expect = 5e-048
Identities = 80/133 (60%), Positives = 94/133 (70%)
Frame = +3 / +1
Query: 327 CLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFYPSYSGCCSSPTEGVICDYYFFNCWLQS 506
CLQCC KSFC *HT +ER S A+GY* Q Y S +G C++ EG+ICD FFNCWL S
Sbjct: 13 CLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIYSSTAGRCTTFEEGIICDNNFFNCWL*S 192
Query: 507 RTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH*ERA*RE 686
+ +VWC+KD W +EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*+ A RE
Sbjct: 193 *SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH*K*AHRE 372
Query: 687 DQA*EIGYCGRHG 725
+ *EIG GRHG
Sbjct: 373 EHT*EIG*RGRHG 411
Score = 184 bits (397), Expect(2) = 6e-048
Identities = 90/131 (68%), Positives = 93/131 (70%)
Frame = -1 / -1
Query: 713 TVPNXXXXXXXXXXXXXXXXXVRKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFV 534
T+PN VRK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAVFV
Sbjct: 399 TLPNLLSMLLSMSSFLMVSLVVRKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAVFV 220
Query: 533 TPYIVNPCSGL*PAIEEIIITDDPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLST 354
TPYI SGL*PAIEEIIITDDPF I+ALTLISHSLSRT SFISSMLST
Sbjct: 219 TPYIDKAASGL*PAIEEIIITDDPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLST 40
Query: 353 EGFAAALETRI 321
EGFAAALET +
Sbjct: 39 EGFAAALETTL 7
Score = 127 bits (273), Expect = 7e-029
Identities = 68/111 (61%), Positives = 74/111 (66%)
Frame = -2 / -2
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*EQNQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 344 H*L*GNQQNV*EQNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 165
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQ 326
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ
Sbjct: 164 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQ 12
Score = 123 bits (263), Expect(2) = 2e-039
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = -3 / -3
Query: 726 SHVFHSTQSLKLGPLVKLFPNGLIFCEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKE 547
SHVFH+TQSLK PL +L NGLI CEETSK CRNKTR YTVNT I +HL+SKSLR+ K+
Sbjct: 412 SHVFHATQSLKYAPLDELISNGLISCEETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKK 233
Query: 546 SSLCDTIHCQSLFWIVTS 493
LC+TIH S F I+ S
Sbjct: 232 GGLCNTIHR*SCFRIIAS 179
Score = 59.7 bits (124), Expect(2) = 2e-039
Identities = 25/45 (55%), Positives = 32/45 (71%)
Frame = -3 / -3
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGD 328
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD
Sbjct: 148 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGD 14
Score = 26.7 bits (52), Expect(2) = 6e-048
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -2
Query: 727 QPCLPQYPIS* 695
+PCLP+YPIS*
Sbjct: 413 KPCLPRYPIS* 381
>gb|BU998572.1|BU998572 HI11H17r HI Hordeum vulgare subsp. vulgare cDNA clone HI11H17
5-PRIME, mRNA sequence
Length = 654
Score = 246 bits (532), Expect = 1e-064
Identities = 105/131 (80%), Positives = 113/131 (86%)
Frame = +1 / +3
Query: 298 VKSFGHIDILVSNAAANPSVDSILEMKESVLDKLWDINVKASILLIQDAAPHLRKGXXXX 477
+++FGHIDI+VSNAAANPSVDSILEMKE VLDKLWDINVKASILL+QDAAPHLRKG
Sbjct: 258 MQNFGHIDIVVSNAAANPSVDSILEMKEPVLDKLWDINVKASILLLQDAAPHLRKGSSVI 437
Query: 478 XXXXXAGYNPEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTEN 657
AGYNPE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPG VPTRFA FLT N
Sbjct: 438 IISSIAGYNPEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGXVPTRFAGFLTTN 617
Query: 658 ETIRKELNERT 690
ETIR EL ER+
Sbjct: 618 ETIRNELIERS 650
Score = 192 bits (413), Expect = 3e-048
Identities = 90/114 (78%), Positives = 92/114 (80%)
Frame = -1 / -3
Query: 647 RKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAIEEIIITD 468
RK A RVGT PGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAIEEIIITD
Sbjct: 607 RKPAKRVGTXPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAIEEIIITD 428
Query: 467 DPFXXXXXXXXXXXIEALTLISHSLSRTDSFISSMLSTEGFAAALETRISMCPK 306
DPF I+ALTLISHSLSRT SFISSMLSTEGFAAALET IS+CPK
Sbjct: 427 DPFLKCGAASCSRRIDALTLISHSLSRTGSFISSMLSTEGFAAALETTISICPK 266
Score = 182 bits (391), Expect = 4e-045
Identities = 74/129 (57%), Positives = 89/129 (68%)
Frame = +3 / +2
Query: 303 ELWAHRYSCLQCCRKSFCR*HT*NERVCSR*AVGY*RQGFYPSYSGCCSSPTEGVICDYY 482
E W + Y CLQCC KSFC *HT +ER S A+GY* Q Y S +G C++ EG+ICD
Sbjct: 263 EFWTY*YCCLQCCCKSFCG*HTRDERTSS*QAMGY*CQSIYSSTAGRCTTFEEGIICDNN 442
Query: 483 FFNCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*D 662
FFNCWL S + +VWC+KD W +EGSC+*DG +Y C*LYS W CSYT C FPH *D
Sbjct: 443 FFNCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWXCSYTFCWFPHN**D 622
Query: 663 H*ERA*RED 689
H*+ A RE+
Sbjct: 623 H*K*AHREE 649
Score = 132 bits (282), Expect = 4e-030
Identities = 70/119 (58%), Positives = 78/119 (65%)
Frame = -2 / -1
Query: 658 HFL*GN*QTV*EQNQGLYS*HEYRVPSHQQEPS*DQREQSL*HHTLSILVLDCNQQLKK* 479
H L*GN Q V*E NQ LYS*H Y PS QEPS* Q+ +SL*HHT L+ D +QQLKK
Sbjct: 618 H*L*GNQQNV*EXNQELYS*HGYLGPSQ*QEPS*GQKGRSL*HHTSIKLLQDYSQQLKKL 439
Query: 478 *SQMTPSVGEEQHPE*EG*KP*R*YPTAYREQTLSFQVCYLQKDLRQHWRQEYLCAQSS 302
SQM PS Q P E * * *YP A +E LS VCY QKDL+QHWRQ+Y Q+S
Sbjct: 438 LSQMIPSSNVVQRPAVEE*ML*H*YPIACQELVLSSLVCYPQKDLQQHWRQQYQYVQNS 262
Score = 96.4 bits (204), Expect(2) = 1e-033
Identities = 41/65 (63%), Positives = 48/65 (73%)
Frame = -3 / -2
Query: 687 PLVKLFPNGLIFCEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLF 508
PL +L NGLI CEETSK CRN TR YTVNT I +HL+SKSLR+ K+ LC+TIH S F
Sbjct: 647 PLDELISNGLISCEETSKTCRNXTRSYTVNTGIWAHLSSKSLRKAKKGGLCNTIHR*SCF 468
Query: 507 WIVTS 493
I+ S
Sbjct: 467 RIIAS 453
Score = 67.0 bits (140), Expect(2) = 1e-033
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = -3 / -2
Query: 462 LP*VRSSILNKKDRSLDVNIPQLIENRLFHFKYAIYRRICGSIGDKNIYVPKAL 301
LP + S+L K+R D+NIP L++N FH YAI+RRIC SIGD NI + K L
Sbjct: 422 LPQMWCSVLQ*KNRCFDINIP*LVKNWFFHL*YAIHRRICSSIGDNNINMSKIL 261
>gb|CA004210.1|CA004210 HS16O15r HS Hordeum vulgare subsp. vulgare cDNA clone HS16O15
5-PRIME, mRNA sequence
Length = 429
Score = 219 bits (473), Expect = 2e-056
Identities = 97/112 (86%), Positives = 106/112 (94%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 94 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 273
Query: 220 AKGITAVGAVCHVSDAQQRKSLIETAVKSFGHIDILVSNAAANPSVDSILEM 375
AKGIT VGAVCHVS+A+QRK LI+TAVK+FGHIDI+VSNAAANPSVDSILEM
Sbjct: 274 AKGITVVGAVCHVSNAEQRKHLIDTAVKNFGHIDIVVSNAAANPSVDSILEM 429
Score = 176 bits (378), Expect = 2e-043
Identities = 81/113 (71%), Positives = 83/113 (73%)
Frame = -1 / -2
Query: 374 ISSMLSTEGFAAALETRISMCPKLLTAVSMRLLRCCASETWQTAPTAVIPLALSPSTASF 195
ISSMLSTEGFAAALET IS+CPK LTAVSMR LRC A ETWQTAPT VIP AL PSTAS
Sbjct: 428 ISSMLSTEGFAAALETTISICPKFLTAVSMRCLRCSALETWQTAPTTVIPFALRPSTASS 249
Query: 194 TFFCLREEMTTXXXXXXXXXXXXXXXXIVDAVTMATFPSRRRHLTSIAAQADL 36
TFFCLREEMTT V+AVT ATFPSRRRHLTSIA A L
Sbjct: 248 TFFCLREEMTTAAPSRPRRSAMASPMPCVEAVTTATFPSRRRHLTSIAGLAVL 90
Score = 161 bits (346), Expect = 6e-039
Identities = 71/112 (63%), Positives = 77/112 (68%)
Frame = -3 / -1
Query: 375 HFKYAIYRRICGSIGDKNIYVPKALDGRLDEALALLCVGDVADGTNRGDTLGPEPLHRLV 196
H YAI+RRIC SIGD NI + K LDGR+DE LAL VGDVADG + D L PE LHRLV
Sbjct: 429 HL*YAIHRRICSSIGDNNINMSKILDGRVDEVLALFGVGDVADGPHNSDPLCPEALHRLV 250
Query: 195 HVXXXXXXXXXXXXLQTEALGDGEADPHRGRRHDGHLPLQTPALDIHRRAGR 40
HV L EALGDGE+D RG RHDGHLPLQTPALD+HRR R
Sbjct: 249 HVFLLAGGDDDRGTLPAEALGDGESDALRGSRHDGHLPLQTPALDLHRRPRR 94
>gb|BQ766883.1|BQ766883 EBro08_SQ007_K09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_K09 5', mRNA sequence
Length = 688
Score = 196 bits (422), Expect = 2e-049
Identities = 85/112 (75%), Positives = 90/112 (80%)
Frame = +1 / +3
Query: 493 AGYNPEQGLTMYGVTKTALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRK 672
AGYNPE L+MYGVTKTALFGLTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR
Sbjct: 6 AGYNPEAALSMYGVTKTALFGLTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRN 185
Query: 673 ELNERTKLKRLGTVEDMXXXXXXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
EL ER+ LKRLG+VEDM +ITAETIVVAGG QSRL*IWLK
Sbjct: 186 ELIERSILKRLGSVEDMASAAAFLASDDASFITAETIVVAGGTQSRL*IWLK 341
Score = 166 bits (358), Expect = 1e-040
Identities = 66/114 (57%), Positives = 80/114 (70%)
Frame = +3 / +2
Query: 489 NCWLQSRTRIDNVWCHKDCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH* 668
NCWL S + +VWC+KD W +EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*
Sbjct: 2 NCWL*S*SSFIDVWCYKDRPFWPYEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH* 181
Query: 669 ERA*REDQA*EIGYCGRHGCGCGFSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
+ A RE+ *EIG GRHG F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 182 K*AHREEHT*EIG*RGRHGFSRRFPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 343
Score = 152 bits (327), Expect = 2e-036
Identities = 70/113 (61%), Positives = 81/113 (71%)
Frame = -3 / -3
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 344 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 165
Query: 651 CEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKESSLCDTIHCQSLFWIVTS 493
CEETSK CRNKTR YTVNT I +HL+SKSLR+ K+ LC+TIH S F I+ S
Sbjct: 164 CEETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKKGGLCNTIHR*SCFRIIAS 6
Score = 146 bits (314), Expect = 2e-034
Identities = 70/114 (61%), Positives = 73/114 (64%)
Frame = -1 / -1
Query: 830 NFSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXX 651
+FSQIYSLDC PPATT+VSAVM D ST+PN
Sbjct: 343 DFSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLV 164
Query: 650 VRKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAVFVTPYIVNPCSGL*PAI 489
VRK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAVFVTPYI SGL*PAI
Sbjct: 163 VRKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAVFVTPYIDKAASGL*PAI 2
>gb|BJ472477.1|BJ472477 BJ472477 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal34l23 5', mRNA sequence
Length = 622
Score = 164 bits (352), Expect = 9e-040
Identities = 74/90 (82%), Positives = 80/90 (88%)
Frame = +1 / +1
Query: 64 KCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLRAKGITAVG 243
KCRRLEGKVA+VTAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLRAKGIT VG
Sbjct: 88 KCRRLEGKVAVVTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLRAKGITVVG 267
Query: 244 AVCHVSDAQQRKSLIETAVKSFGHIDILVS 333
AVCHVS+A+QRK LI+TAVK + IL S
Sbjct: 268 AVCHVSNAEQRKHLIDTAVKVIFMLSILCS 357
Score = 122 bits (261), Expect = 3e-027
Identities = 57/90 (63%), Positives = 58/90 (64%)
Frame = -1 / -3
Query: 332 ETRISMCPKLLTAVSMRLLRCCASETWQTAPTAVIPLALSPSTASFTFFCLREEMTTXXX 153
E RI LTAVSMR LRC A ETWQTAPT VIP AL PSTAS TFFCLREEMTT
Sbjct: 356 EQRIDSINITLTAVSMRCLRCSALETWQTAPTTVIPFALRPSTASSTFFCLREEMTTAAP 177
Query: 152 XXXXXXXXXXXXXIVDAVTMATFPSRRRHL 63
V+AVT ATFPSRRRHL
Sbjct: 176 SRPRRSAMASPMPCVEAVTTATFPSRRRHL 87
Score = 113 bits (242), Expect = 1e-024
Identities = 51/80 (63%), Positives = 54/80 (67%)
Frame = -3 / -2
Query: 303 LDGRLDEALALLCVGDVADGTNRGDTLGPEPLHRLVHVXXXXXXXXXXXXLQTEALGDGE 124
LDGR+DE LAL VGDVADG + D L PE LHRLVHV L EALGDGE
Sbjct: 327 LDGRVDEVLALFGVGDVADGPHNSDPLCPEALHRLVHVFLLAGGDDDRGTLPAEALGDGE 148
Query: 123 ADPHRGRRHDGHLPLQTPAL 64
+D RG RHDGHLPLQTPAL
Sbjct: 147 SDALRGSRHDGHLPLQTPAL 88
>gb|BQ761130.1|BQ761130 EBro04_SQ004_D16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ004_D16 5', mRNA sequence
Length = 553
Score = 163 bits (351), Expect = 1e-039
Identities = 72/96 (75%), Positives = 76/96 (79%)
Frame = +1 / +2
Query: 541 TALFGLTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRKELNERTKLKRLGTVED 720
TALFGLTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR EL ER+ LKRLG+VED
Sbjct: 2 TALFGLTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVED 181
Query: 721 MXXXXXXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
M +ITAETIVVAGG QSRL*IWLK
Sbjct: 182 MASAAAFLASDDASFITAETIVVAGGTQSRL*IWLK 289
Score = 141 bits (303), Expect = 5e-033
Identities = 57/97 (58%), Positives = 68/97 (70%)
Frame = +3 / +1
Query: 540 DCSLWSHEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH*ERA*REDQA*EIGYCGR 719
D W +EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*+ A RE+ *EIG GR
Sbjct: 1 DRPFWPYEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH*K*AHREEHT*EIG*RGR 180
Query: 720 HGCGCGFSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
HG F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 181 HGFSRRFPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 291
Score = 133 bits (286), Expect = 1e-030
Identities = 61/95 (64%), Positives = 70/95 (73%)
Frame = -3 / -1
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 292 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 113
Query: 651 CEETSKPCRNKTRGYTVNTSIGSHLTSKSLRETKE 547
CEETSK CRNKTR YTVNT I +HL+SKSLR+ K+
Sbjct: 112 CEETSKTCRNKTRSYTVNTGIWAHLSSKSLRKAKK 8
Score = 119 bits (255), Expect = 2e-026
Identities = 57/97 (58%), Positives = 60/97 (61%)
Frame = -1 / -2
Query: 830 NFSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXX 651
+FSQIYSLDC PPATT+VSAVM D ST+PN
Sbjct: 291 DFSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLV 112
Query: 650 VRKLANRVGTKPGAIQLTRVSGPISPARAFVRPKRAV 540
VRK A RVGTKPGAIQLTRV GPIS ARAFVRPKRAV
Sbjct: 111 VRKPAKRVGTKPGAIQLTRVFGPISVARAFVRPKRAV 1
>gb|AV921413.1|AV921413 AV921413 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f13 3', mRNA sequence
Length = 657
Score = 152 bits (326), Expect = 3e-036
Identities = 67/91 (73%), Positives = 71/91 (78%)
Frame = +1 / -1
Query: 556 LTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRKELNERTKLKRLGTVEDMXXXX 735
LTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR EL ER+ LKRLG+VEDM
Sbjct: 657 LTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAA 478
Query: 736 XXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
+ITAETIVVAGG QSRL*IWLK
Sbjct: 477 AFLASDDASFITAETIVVAGGTQSRL*IWLK 385
Score = 136 bits (291), Expect = 2e-031
Identities = 55/91 (60%), Positives = 66/91 (72%)
Frame = +3 / -3
Query: 558 HEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH*ERA*REDQA*EIGYCGRHGCGCG 737
+EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*+ A RE+ *EIG GRHG
Sbjct: 655 YEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH*K*AHREEHT*EIG*RGRHGFSRR 476
Query: 738 FSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 475 FPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 383
Score = 131 bits (280), Expect = 7e-030
Identities = 60/92 (65%), Positives = 68/92 (73%)
Frame = -3 / +1
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 382 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 561
Query: 651 CEETSKPCRNKTRGYTVNTSIGSHLTSKSLRE 556
CEETSK CRNKTR YTVNT I +HL+SKSLR+
Sbjct: 562 CEETSKTCRNKTRSYTVNTGIWAHLSSKSLRK 657
Score = 105 bits (225), Expect = 3e-022
Identities = 51/91 (56%), Positives = 54/91 (59%)
Frame = -1 / +2
Query: 830 NFSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXX 651
+FSQIYSLDC PPATT+VSAVM D ST+PN
Sbjct: 383 DFSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLV 562
Query: 650 VRKLANRVGTKPGAIQLTRVSGPISPARAFV 558
VRK A RVGTKPGAIQLTRV GPIS ARAFV
Sbjct: 563 VRKPAKRVGTKPGAIQLTRVFGPISVARAFV 655
>gb|AV929715.1|AV929715 AV929715 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16e19 3', mRNA sequence
Length = 597
Score = 152 bits (326), Expect = 3e-036
Identities = 67/91 (73%), Positives = 71/91 (78%)
Frame = +1 / -1
Query: 556 LTKALAGEMGPDTRVNCIAPGFVPTRFASFLTENETIRKELNERTKLKRLGTVEDMXXXX 735
LTKALA EMGP+TRVNCIAPGFVPTRFA FLT NETIR EL ER+ LKRLG+VEDM
Sbjct: 597 LTKALATEMGPNTRVNCIAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAA 418
Query: 736 XXXXXXXXXYITAETIVVAGGVQSRL*IWLK 828
+ITAETIVVAGG QSRL*IWLK
Sbjct: 417 AFLASDDASFITAETIVVAGGTQSRL*IWLK 325
Score = 136 bits (291), Expect = 2e-031
Identities = 55/91 (60%), Positives = 66/91 (72%)
Frame = +3 / -3
Query: 558 HEGSCW*DGTRYSC*LYSPWFCSYTVC*FPHRK*DH*ERA*REDQA*EIGYCGRHGCGCG 737
+EGSC+*DG +Y C*LYS WFCSYT C FPH *DH*+ A RE+ *EIG GRHG
Sbjct: 595 YEGSCY*DGPKYPC*LYSSWFCSYTFCWFPHN**DH*K*AHREEHT*EIG*RGRHGFSRR 416
Query: 738 FSGV*RRIIHYG*NHCCCWRGAV*AVNLAEV 830
F G+ R I+HY *N+CCCWR + ++LAEV
Sbjct: 415 FPGIRRCILHYS*NNCCCWRNTIKTIDLAEV 323
Score = 131 bits (280), Expect = 7e-030
Identities = 60/92 (65%), Positives = 68/92 (73%)
Frame = -3 / +1
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 322 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 501
Query: 651 CEETSKPCRNKTRGYTVNTSIGSHLTSKSLRE 556
CEETSK CRNKTR YTVNT I +HL+SKSLR+
Sbjct: 502 CEETSKTCRNKTRSYTVNTGIWAHLSSKSLRK 597
Score = 105 bits (225), Expect = 3e-022
Identities = 51/91 (56%), Positives = 54/91 (59%)
Frame = -1 / +2
Query: 830 NFSQIYSLDCTPPATTMVSAVMYDXXXXXXXXXXXXXXSTVPNXXXXXXXXXXXXXXXXX 651
+FSQIYSLDC PPATT+VSAVM D ST+PN
Sbjct: 323 DFSQIYSLDCVPPATTIVSAVMKDASSDARKAAAEAMSSTLPNLLSMLLSMSSFLMVSLV 502
Query: 650 VRKLANRVGTKPGAIQLTRVSGPISPARAFV 558
VRK A RVGTKPGAIQLTRV GPIS ARAFV
Sbjct: 503 VRKPAKRVGTKPGAIQLTRVFGPISVARAFV 595
>gb|BM375790.2|BM375790 EBem06_SQ004_G19_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_G19 5', mRNA sequence
Length = 334
Score = 135 bits (290), Expect = 3e-031
Identities = 61/71 (85%), Positives = 65/71 (91%)
Frame = +1 / +2
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST GIGLAIAE LG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 122 TARPAMEVKCRRLEGKVAVVTASTQGIGLAIAELLGREGAAVVISSRKQKNVDEAVEGLR 301
Query: 220 AKGITAVGAVC 252
AKGIT VGAVC
Sbjct: 302 AKGITVVGAVC 334
>gb|AV924629.1|AV924629 AV924629 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16f07 5', mRNA sequence
Length = 258
Score = 102 bits (217), Expect(2) = 1e-030
Identities = 45/52 (86%), Positives = 48/52 (92%)
Frame = +1 / +1
Query: 124 LAIAERLGLEGAAVVISSRKQKNVNEAVEGLRAKGITAVGAVCHVSDAQQRK 279
LAIAERLG EGAAVVISSRKQKNV+EAVEGLRAKGIT VGA CHV +A+QRK
Sbjct: 103 LAIAERLGREGAAVVISSRKQKNVDEAVEGLRAKGITVVGAXCHVXNAEQRK 258
Score = 75.8 bits (159), Expect(2) = 8e-023
Identities = 31/39 (79%), Positives = 31/39 (79%)
Frame = -1 / -2
Query: 278 LRCCASETWQTAPTAVIPLALSPSTASFTFFCLREEMTT 162
LRC A TWQ APT VIP AL PSTAS TFFCLREEMTT
Sbjct: 257 LRCSALXTWQXAPTTVIPFALRPSTASSTFFCLREEMTT 141
Score = 51.5 bits (106), Expect(2) = 8e-023
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = -3 / -2
Query: 120 DPHRGRRHDGHLPLQTPALDIHRRAGR 40
D RG RH GHLPLQTPALD+HRR R
Sbjct: 98 DALRGSRHXGHLPLQTPALDLHRRPRR 18
Score = 51.0 bits (105), Expect(2) = 1e-030
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +1 / +3
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIG 123
+A AM+VKCRRLEGKVA VTAST GIG
Sbjct: 18 TARPAMEVKCRRLEGKVAXVTASTQGIG 101
>gb|AW982502.2|AW982502 HVSMEg0003H02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003H02f, mRNA sequence
Length = 562
Score = 125 bits (268), Expect = 3e-028
Identities = 55/77 (71%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 598 VNCIAPGFVPTRFASFLTENETIRKELNERTKLKRLGTVEDMXXXXXXXXXXXXXYITAE 777
VNCIAPGFVPTRFA FLT NETIR EL ER+ LKRLG+VEDM +ITAE
Sbjct: 3 VNCIAPGFVPTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAAAFLASDDASFITAE 182
Query: 778 TIVVAGGVQSRL*IWLK 828
TIVVAGG QSRL*IWLK
Sbjct: 183 TIVVAGGTQSRL*IWLK 233
Score = 114 bits (243), Expect = 1e-024
Identities = 47/78 (60%), Positives = 55/78 (70%)
Frame = +3 / +2
Query: 597 C*LYSPWFCSYTVC*FPHRK*DH*ERA*REDQA*EIGYCGRHGCGCGFSGV*RRIIHYG* 776
C*LYS WFCSYT C FPH *DH*+ A RE+ *EIG GRHG F G+ R I+HY *
Sbjct: 2 C*LYSSWFCSYTFCWFPHN**DH*K*AHREEHT*EIG*RGRHGFSRRFPGIRRCILHYS* 181
Query: 777 NHCCCWRGAV*AVNLAEV 830
N+CCCWR + ++LAEV
Sbjct: 182 NNCCCWRNTIKTIDLAEV 235
Score = 111 bits (236), Expect = 9e-024
Identities = 51/78 (65%), Positives = 56/78 (71%)
Frame = -3 / -3
Query: 831 KLQPDLQPRLHPSSNNNGFSRNV*CVVRRQKSRSRSHVFHSTQSLKLGPLVKLFPNGLIF 652
+LQPDL L SSNNN FS N C+V Q+S SHVFH+TQSLK PL +L NGLI
Sbjct: 236 RLQPDL*S*LCSSSNNNCFSCNEGCIVGCQESGG*SHVFHATQSLKYAPLDELISNGLIS 57
Query: 651 CEETSKPCRNKTRGYTVN 598
CEETSK CRNKTR YTVN
Sbjct: 56 CEETSKTCRNKTRSYTVN 3
>gb|BI956261.1|BI956261 HVSMEn0001L13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0001L13f, mRNA sequence
Length = 1203
Score = 116 bits (248), Expect(2) = 9e-027
Identities = 53/72 (73%), Positives = 59/72 (81%)
Frame = +1 / +2
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+VTAST G+ L IAERLG EGAAV ISSRKQKNV+EAV GL
Sbjct: 29 TARPAMEVKCRRLEGKVAVVTASTQGV*LTIAERLGREGAAVFISSRKQKNVDEAVXGLM 208
Query: 220 AKGITAVGAVCH 255
A IT VGA+ H
Sbjct: 209 ALAITVVGAIYH 244
Score = 24.0 bits (46), Expect(2) = 9e-027
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1 / +3
Query: 301 KSFGHIDILVSNAAANPSVDSILEMKE 381
K+ HID +AAA P D+ L + E
Sbjct: 291 KNLRHIDTRGRSAAAYPXXDATLRIVE 371
>gb|BU972357.1|BU972357 HB21G20r BC Hordeum vulgare subsp. vulgare cDNA clone HB21G20
5-PRIME, mRNA sequence
Length = 256
Score = 117 bits (250), Expect = 1e-025
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +1 / +1
Query: 40 SACAAMDVKCRRLEGKVAIVTASTMGIGLAIAERLGLEGAAVVISSRKQKNVNEAVEGLR 219
+A AM+VKCRRLEGKVA+ TAST GIGLAIAERLG EGAAVVISSRKQKNV+EAVEGLR
Sbjct: 70 TARPAMEVKCRRLEGKVAVXTASTQGIGLAIAERLGREGAAVVISSRKQKNVDEAVEGLR 249
Query: 220 AK 225
AK
Sbjct: 250 AK 255
>gb|AV922126.1|AV922126 AV922126 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19m12 3', mRNA sequence
Length = 619
Score = 102 bits (218), Expect = 3e-021
Identities = 46/68 (67%), Positives = 49/68 (72%)
Frame = +1 / -1
Query: 625 PTRFASFLTENETIRKELNERTKLKRLGTVEDMXXXXXXXXXXXXXYITAETIVVAGGVQ 804
PTRFA FLT NETIR EL ER+ LKRLG+VEDM +ITAETIVVAGG Q
Sbjct: 619 PTRFAGFLTTNETIRNELIERSILKRLGSVEDMASAAAFLASDDASFITAETIVVAGGTQ 440
Query: 805 SRL*IWLK 828
SRL*IWLK
Sbjct: 439 SRL*IWLK 416
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 365,078,863
Number of Sequences: 312970
Number of extensions: 5121129
Number of successful extensions: 52056
Number of sequences better than 1.0e-020: 36
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 11704839442
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)