TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917194.1|AV917194 AV917194 K. Sato unpublished cDNA li... 164 4e-040
gb|BQ458826.1|BQ458826 HA04B17r HA Hordeum vulgare subsp. v... 164 4e-040
gb|BQ656545.1|BQ656545 HA04B17u HA Hordeum vulgare subsp. v... 164 4e-040
gb|BU985820.1|BU985820 HF08L16r HF Hordeum vulgare subsp. v... 164 4e-040
gb|BU995569.1|BU995569 HM10K10r HM Hordeum vulgare subsp. v... 164 4e-040
gb|CB879942.1|CB879942 HM05A07w HM Hordeum vulgare subsp. v... 164 4e-040
gb|CB881728.1|CB881728 HM10L09w HM Hordeum vulgare subsp. v... 164 4e-040
gb|BM099601.2|BM099601 EBes01_SQ003_L13_R embryo sac, 4-6 D... 164 7e-040
gb|AJ462863.1|AJ462863 AJ462863 S00002 Hordeum vulgare subs... 129 1e-029
>gb|AV917194.1|AV917194 AV917194 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8k04 5', mRNA sequence
Length = 515
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 125 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 304
Query: 425 PKCP* 439
PKCP*
Sbjct: 305 PKCP* 319
>gb|BQ458826.1|BQ458826 HA04B17r HA Hordeum vulgare subsp. vulgare cDNA clone HA04B17
5-PRIME, mRNA sequence
Length = 514
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / +3
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 168 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 347
Query: 425 PKCP* 439
PKCP*
Sbjct: 348 PKCP* 362
>gb|BQ656545.1|BQ656545 HA04B17u HA Hordeum vulgare subsp. vulgare cDNA clone HA04B17
3-PRIME, mRNA sequence
Length = 515
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / -1
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 347 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 168
Query: 425 PKCP* 439
PKCP*
Sbjct: 167 PKCP* 153
>gb|BU985820.1|BU985820 HF08L16r HF Hordeum vulgare subsp. vulgare cDNA clone HF08L16
5-PRIME, mRNA sequence
Length = 517
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / +3
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 174 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 353
Query: 425 PKCP* 439
PKCP*
Sbjct: 354 PKCP* 368
>gb|BU995569.1|BU995569 HM10K10r HM Hordeum vulgare subsp. vulgare cDNA clone HM10K10
5-PRIME, mRNA sequence
Length = 587
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / +1
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 151 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 330
Query: 425 PKCP* 439
PKCP*
Sbjct: 331 PKCP* 345
>gb|CB879942.1|CB879942 HM05A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM05A07
3-PRIME, mRNA sequence
Length = 589
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / -2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 438 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 259
Query: 425 PKCP* 439
PKCP*
Sbjct: 258 PKCP* 244
>gb|CB881728.1|CB881728 HM10L09w HM Hordeum vulgare subsp. vulgare cDNA clone HM10L09
3-PRIME, mRNA sequence
Length = 602
Score = 164 bits (353), Expect = 4e-040
Identities = 57/65 (87%), Positives = 58/65 (89%)
Frame = +2 / -1
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 437 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 258
Query: 425 PKCP* 439
PKCP*
Sbjct: 257 PKCP* 243
>gb|BM099601.2|BM099601 EBes01_SQ003_L13_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ003_L13 5', mRNA sequence
Length = 362
Score = 164 bits (352), Expect(2) = 7e-040
Identities = 56/64 (87%), Positives = 57/64 (89%)
Frame = +2 / +2
Query: 245 LNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEGG 424
L PWECS KC SRCS TQY+KACLT CNKCCA CLCVPPG YGNKGACPCYNNWKTKEGG
Sbjct: 170 LKPWECSSKCSSRCSGTQYKKACLTYCNKCCATCLCVPPGTYGNKGACPCYNNWKTKEGG 349
Query: 425 PKCP 436
PKCP
Sbjct: 350 PKCP 361
Score = 19.4 bits (36), Expect(2) = 7e-040
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1 / +1
Query: 115 LLPVARIPAPRRRLSR 162
LLP P PR R+ R
Sbjct: 70 LLPPPGAPRPRSRVPR 117
>gb|AJ462863.1|AJ462863 AJ462863 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200057E02F1, mRNA sequence
Length = 420
Score = 129 bits (277), Expect = 1e-029
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = +2 / +3
Query: 242 NLNPWECSPKCGSRCSKTQYRKACLTLCNKCCAKCLCVPPGFYGNKGACPCYNNWKTKEG 421
+L ++C P C RCS T+YRK CL CNKCC CLCVP GFYG+K CPCYNNWKTKEG
Sbjct: 9 SLKIYQCKPVCEYRCSDTKYRKPCLFFCNKCCNTCLCVPSGFYGHKYECPCYNNWKTKEG 188
Query: 422 GPKCP* 439
PKCP*
Sbjct: 189 RPKCP* 206
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 242,338,134
Number of Sequences: 312970
Number of extensions: 3582629
Number of successful extensions: 55978
Number of sequences better than 1.0e-020: 10
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7041173694
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)