TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.3
(1601 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 171 3e-043
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 171 bits (368), Expect = 3e-043
Identities = 59/103 (57%), Positives = 84/103 (81%)
Frame = +2 / +2
Query: 353 LKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNIS 532
LK+G WT+ ED +L +Y+ +HGEG+W ++ KN GL RCGKSCRLRW N+LR ++K+G +
Sbjct: 383 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 562
Query: 533 KEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSR 661
EEE +II+LH+ +GN+W+ +A++LPGRTDNEIKNYWN+ + R
Sbjct: 563 PEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 14,266,557
Number of Sequences: 8143
Number of extensions: 196334
Number of successful extensions: 1728
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 45
effective length of database: 1,201,052
effective search space used: 586113376
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)