TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713139.2.1
(487 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Aven... 135 4e-033
>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_A01_A01, mRNA sequence
Length = 435
Score = 135 bits (290), Expect = 4e-033
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -3 / +2
Query: 464 AHAVCILAEWDEFRTLDYKRMFDAMHKPAFIFDGRNVVDXAKLREIGFVVYAIGKPLDDW 285
AHAVCIL EW+EF+ LDY+++FD M KPAF+FDGRNVVD KLREIGF+ Y+IG+PLD W
Sbjct: 2 AHAVCILTEWEEFKKLDYQKIFDNMQKPAFVFDGRNVVDAEKLREIGFIGYSIGEPLDAW 181
Query: 284 LKDMPAVA* 258
LKDMPAVA*
Sbjct: 182 LKDMPAVA* 208
Score = 98.2 bits (208), Expect = 8e-022
Identities = 47/68 (69%), Positives = 51/68 (75%)
Frame = +1 / -1
Query: 262 ATAGMSLSQSSSGLPIA*TTKPISRSLAXSTTLRPSKMKAGLCMASNMRL*SSVLNSSHS 441
ATAGMSLS +SSG P+ * KPIS S + STTLRPSK KAG CM S + *SS LNSSHS
Sbjct: 204 ATAGMSLSHASSGSPME*PMKPISLSFSASTTLRPSKTKAGFCMLSKIFW*SSFLNSSHS 25
Query: 442 ARMQTACA 465
RMQTA A
Sbjct: 24 VRMQTAWA 1
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,350,845
Number of Sequences: 8143
Number of extensions: 51942
Number of successful extensions: 1455
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 41
effective length of database: 1,233,624
effective search space used: 148034880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)