TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3173057.2.1
(1264 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Aven... 67 2e-031
gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Aven... 107 3e-024
>gb|CN820717.1|CN820717 HRO4416_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G05_N10, mRNA
sequence
Length = 644
Score = 67.0 bits (140), Expect(3) = 2e-031
Identities = 28/54 (51%), Positives = 31/54 (57%)
Frame = -2 / -1
Query: 732 VVAVGYGAENGKDYWIVRNSWGPKWGEAGYIRMERNVNASTGKCGIAMMASYPT 571
+V G A GK YWIV+NS G +G GYI ER V S G CGIA YPT
Sbjct: 308 IVGYGTDASTGKKYWIVKNSHGTSFGMGGYILFERGVTDSRGLCGIASSPVYPT 147
Score = 64.8 bits (135), Expect(3) = 2e-031
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = -2 / -1
Query: 1005 AFDFIIKNGGIDTEDDYPYRAVDGKCDMNRKNARVVSIDGFEDVPENDEKSLQKAVAHQP 826
A +I KNGGI TE DYPY G CD + VS+ V N+E+ L +AVA QP
Sbjct: 584 AIFWIWKNGGITTEADYPYMGKKGVCDKTKLEHHTVSVLSVGYVSSNNEQKLMEAVAKQP 405
Query: 825 VSVAIE 808
V+ IE
Sbjct: 404 VTAVIE 387
Score = 37.7 bits (76), Expect(3) = 2e-031
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2 / -1
Query: 792 FQLYKSGVFSGSCTTNLDHGVVAVGYGAE 706
F YKSGV+SG C +H V VGYG +
Sbjct: 374 FAKYKSGVYSGPCGYAYNHIVTIVGYGTD 288
>gb|CN816125.1|CN816125 HRO4517_C06_E11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_C06_E11, mRNA sequence
Length = 851
Score = 107 bits (229), Expect = 3e-024
Identities = 37/51 (72%), Positives = 44/51 (86%)
Frame = -2 / +3
Query: 426 WGCCPVEGATCCKDHASCCPPGYPVCNVRAGTCSVSKNSPLSVKALKRTLA 274
WGCCP+EGA+CC DH SCCP YPVC+ R GTCS++K+SPLSVKA+KR LA
Sbjct: 390 WGCCPLEGASCCDDHYSCCPHDYPVCDTRRGTCSMTKDSPLSVKAIKRILA 542
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,299,231
Number of Sequences: 8143
Number of extensions: 171718
Number of successful extensions: 1416
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 454657320
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)