TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3089980.2.1
(540 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Aven... 104 3e-031
>gb|CN817298.1|CN817298 HRO4458_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D05_H10, mRNA sequence
Length = 554
Score = 104 bits (221), Expect(2) = 3e-031
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = -2 / +3
Query: 470 TVRAVDDPRALDKTLYLRPPANTCSLAHLVRLWEDKTGRALDKYYMPDEELVNRIRDSPL 291
T++AVDDPR L+K LYLRPP+NT SL LV LWE K G+ L + Y+P+ E++ I++SP
Sbjct: 3 TIKAVDDPRTLNKILYLRPPSNTLSLNELVSLWEKKHGKTLARVYIPESEVLKNIQESPA 182
Query: 290 PLNFQLAMVHATVVAG 243
PLN LA+ H+ V G
Sbjct: 183 PLNVALAICHSVWVKG 230
Score = 45.1 bits (92), Expect(2) = 3e-031
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -2 / +3
Query: 209 GVEATELYPDVNYVTVHDYLDGL 141
GVEATELYPDV+Y+TV +YL+ L
Sbjct: 264 GVEATELYPDVHYITVDEYLNRL 332
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,435,600
Number of Sequences: 8143
Number of extensions: 38029
Number of successful extensions: 1534
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 167890897
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)