TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Aven... 87 6e-026
>gb|CN815328.1|CN815328 HRO4508_E01_J02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_E01_J02, mRNA sequence
Length = 229
Score = 86.8 bits (183), Expect(2) = 6e-026
Identities = 36/39 (92%), Positives = 38/39 (97%)
Frame = +1 / +3
Query: 433 DVAVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVIM 549
+V VNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVI+
Sbjct: 111 EVNVNLIITDYCMPGMTGYDLLKKIKESSSLRDIPVVII 227
Score = 46.4 bits (95), Expect(2) = 6e-026
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +1 / +3
Query: 316 FQVTTVDSGSKALQFLGLHDQDSTV 390
F VTTVDSG+KAL+FLGLH +D+++
Sbjct: 9 FPVTTVDSGTKALEFLGLHGEDASI 83
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 15,829,801
Number of Sequences: 8143
Number of extensions: 238027
Number of successful extensions: 1446
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 487305585
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)