TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440444.2.1
(237 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Aven... 145 1e-036
>gb|CN818726.1|CN818726 HRO4468_A11_A22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_A11_A22, mRNA sequence
Length = 528
Score = 145 bits (312), Expect = 1e-036
Identities = 58/78 (74%), Positives = 62/78 (79%)
Frame = -3 / +2
Query: 235 KHSVLMFLRWPNTKQGRPASQLIGFRSQHLKAGETAKLRFDISPCKHFSRVRADGRKVID 56
KHSVLMFLRWPN GRP SQL+GFRSQHL AGE A LRFD+SPC+HFSR R DG+KVID
Sbjct: 110 KHSVLMFLRWPNVTGGRPVSQLVGFRSQHLMAGEKASLRFDVSPCEHFSRAREDGKKVID 289
Query: 55 IGSHFFMVDNHEMEIRFE 2
GSHF MVD E EI E
Sbjct: 290 RGSHFLMVDKDESEISME 343
Score = 134 bits (287), Expect = 3e-033
Identities = 56/78 (71%), Positives = 62/78 (79%)
Frame = +3 / -1
Query: 3 SNLISISWLSTMKK*DPISITFLPSALTLEKCLHGLMSNLSLAVSPALRCWLLNPISWLA 182
S LIS+S LSTM+K +P+SITFLPS+L L KC HGL SNL LA SPA+RCWL NP SWL
Sbjct: 342 SILISLSSLSTMRKCEPLSITFLPSSLALLKCSHGLTSNLRLAFSPAMRCWLRNPTSWLT 163
Query: 183 GRPCFVFGQRRNMSTECF 236
GRP GQRRNMSTECF
Sbjct: 162 GRPPVTLGQRRNMSTECF 109
Score = 94.1 bits (199), Expect = 5e-021
Identities = 44/78 (56%), Positives = 52/78 (66%)
Frame = +2 / -3
Query: 2 LKPNLHLMVVNHEEMRPNIDHLPAIRPHPGEMLTRADVKPELSRLPCLEMLAPEPNQLAC 181
L +L ++VNHEEM +IDHL A+ P P E+L ADVKP+ L EMLA EPNQLA
Sbjct: 343 LHTDLAFILVNHEEM*ASIDHLLAVLPRPTEVLAWADVKPQAGLLTGHEMLASEPNQLAD 164
Query: 182 RATLFRVWPAEEHEHRVL 235
R V PA+EHEHRVL
Sbjct: 163 RTPTRHVGPAKEHEHRVL 110
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,204,699
Number of Sequences: 8143
Number of extensions: 41763
Number of successful extensions: 5689
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 39
effective length of database: 1,249,910
effective search space used: 48746490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)