TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY065238.1| Arabidopsis thaliana putative chorismate mut... 109 1e-035
ref|NM_121125.2| Arabidopsis thaliana ATCM2; chorismate mut... 109 1e-035
emb|AX343933.1| Sequence 3 from Patent WO0200901 109 1e-035
emb|AX464575.1| Sequence 3 from Patent WO0202798 109 1e-035
emb|AX464581.1| Sequence 9 from Patent WO0202798 109 1e-035
gb|L47355.1| Arabidopsis thaliana chorismate mutase mRNA, c... 109 1e-035
gb|AY133840.1| Arabidopsis thaliana clone U18739 putative c... 109 1e-035
emb|AX506277.1| Sequence 972 from Patent WO0216655 109 1e-035
emb|BX824460.1|CNS0A6WL Arabidopsis thaliana Full-length cD... 100 1e-029
ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutas... 100 5e-029
emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cD... 100 5e-029
gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, compl... 100 5e-029
emb|AX464574.1| Sequence 2 from Patent WO0202798 100 5e-029
emb|AX464580.1| Sequence 8 from Patent WO0202798 100 5e-029
emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase 100 5e-029
gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult ... 100 5e-029
emb|AX506042.1| Sequence 737 from Patent WO0216655 100 5e-029
gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormon... 96 9e-028
ref|NM_105604.2| Arabidopsis thaliana CM3 (CHORISMATE MUTAS... 95 2e-026
gb|AF131219.1|AF131219 Arabidopsis thaliana chorismate muta... 95 2e-026
emb|AX464576.1| Sequence 4 from Patent WO0202798 95 2e-026
emb|AX464582.1| Sequence 10 from Patent WO0202798 95 2e-026
dbj|AK117860.1| Arabidopsis thaliana At1g69370 mRNA for put... 95 2e-026
gb|BT005306.1| Arabidopsis thaliana At1g69370 mRNA, complet... 95 2e-026
emb|AX464578.1| Sequence 6 from Patent WO0202798 63 2e-021
emb|AJ242648.1|ATH242648 Arabidopsis thaliana CM2 gene for ... 63 2e-021
>gb|AY065238.1| Arabidopsis thaliana putative chorismate mutase CM2 (At5g10870)
mRNA, complete cds
Length = 1055
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +3
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 282 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 461
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 462 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 602
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 147 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 251
>ref|NM_121125.2| Arabidopsis thaliana ATCM2; chorismate mutase AT5G10870 (ATCM2)
mRNA, complete cds
Length = 1041
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +3
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 282 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 461
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 462 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 602
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 147 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 251
>emb|AX343933.1| Sequence 3 from Patent WO0200901
Length = 1006
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 247 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 426
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 427 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 567
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 112 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 216
>emb|AX464575.1| Sequence 3 from Patent WO0202798
Length = 1006
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 247 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 426
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 427 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 567
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 112 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 216
>emb|AX464581.1| Sequence 9 from Patent WO0202798
Length = 1006
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / -1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 760 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 581
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 580 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 440
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / -1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 895 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 791
>gb|L47355.1| Arabidopsis thaliana chorismate mutase mRNA, complete cds
Length = 1006
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 247 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 426
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 427 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 567
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 112 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 216
>gb|AY133840.1| Arabidopsis thaliana clone U18739 putative chorismate mutase CM2
(At5g10870) mRNA, complete cds
Length = 829
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 184 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 363
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 364 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 504
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 49 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 153
>emb|AX506277.1| Sequence 972 from Patent WO0216655
Length = 798
Score = 109 bits (233), Expect(2) = 1e-035
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +1 / +1
Query: 331 ASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDA 510
+S E F+RE+E +Q+K GRY+ +E PFF +P ++ P + + S L+P A SVN+N
Sbjct: 184 SSLTEFFVRETEIIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQ 363
Query: 511 IWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW +YF ELLP K GDDGNY S +Y +VA
Sbjct: 364 IWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVA 504
Score = 62.9 bits (131), Expect(2) = 1e-035
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 49 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 153
>emb|BX824460.1|CNS0A6WL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH4ZG08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1265
Score = 100 bits (212), Expect(2) = 1e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 439 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 618
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 619 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 762
Score = 52.4 bits (108), Expect(2) = 1e-029
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +RD L R+ED+I+F L+ERAKY N YDP
Sbjct: 307 LTLEGIRDSLIRQEDSIIFGLLERAKYCYNADTYDP 414
>ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutase AT3G29200 (CM1) mRNA,
complete cds
Length = 1370
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 546 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 725
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 726 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 869
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 414 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 521
>emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 546 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 725
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 726 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLECLSKRIHYGKFVA 869
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 414 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 521
>gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, complete sequence
Length = 1274
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 456 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 635
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 636 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 779
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 324 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 431
>emb|AX464574.1| Sequence 2 from Patent WO0202798
Length = 1207
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 382 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 561
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 562 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 705
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 250 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 357
>emb|AX464580.1| Sequence 8 from Patent WO0202798
Length = 1207
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / -1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 826 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 647
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 646 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 503
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / -1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 958 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 851
>emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase
Length = 1207
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 382 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 561
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 562 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 705
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 250 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 357
>gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC11 5PRIM, mRNA
sequence
Length = 1025
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 495 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYRKVLHFAADSININK 674
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 675 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 818
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 363 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 470
>emb|AX506042.1| Sequence 737 from Patent WO0216655
Length = 1005
Score = 100 bits (212), Expect(2) = 5e-029
Identities = 42/108 (38%), Positives = 60/108 (55%)
Frame = +1 / +1
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
N S VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N
Sbjct: 370 NGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININK 549
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
IW+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 550 KIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVA 693
Score = 50.1 bits (103), Expect(2) = 5e-029
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 238 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 345
>gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH61ZC01 5PRIM,
mRNA sequence
Length = 977
Score = 95.9 bits (203), Expect(2) = 9e-028
Identities = 40/105 (38%), Positives = 59/105 (56%)
Frame = +1 / +1
Query: 337 FVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAIW 516
+VE ++ +E + +K GR++S E PFF +P + PP + L+ AA S+N+N IW
Sbjct: 448 WVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIW 627
Query: 517 SMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
+MYF +L+PRL K GDDGNY S +Y +VA
Sbjct: 628 NMYFRDLVPRLVKKGDDGNYGSTAVCYAICLQCLSKRIHYGKFVA 762
Score = 50.1 bits (103), Expect(2) = 9e-028
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+L+ +R+ L R+ED+I+F L+ERAKY N YDP
Sbjct: 306 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDP 413
>ref|NM_105604.2| Arabidopsis thaliana CM3 (CHORISMATE MUTASE 3); chorismate mutase
AT1G69370 (CM3) mRNA, complete cds
Length = 1261
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 485 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 664
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 665 WNMYFKHLLPRLVKPGDDGN 724
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 347 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 451
>gb|AF131219.1|AF131219 Arabidopsis thaliana chorismate mutase 3 (CM3) mRNA, complete cds
Length = 1217
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 485 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 664
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 665 WNMYFKHLLPRLVKPGDDGN 724
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 347 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 451
>emb|AX464576.1| Sequence 4 from Patent WO0202798
Length = 1217
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 485 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 664
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 665 WNMYFKHLLPRLVKPGDDGN 724
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 347 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 451
>emb|AX464582.1| Sequence 10 from Patent WO0202798
Length = 1217
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / -2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 733 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 554
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 553 WNMYFKHLLPRLVKPGDDGN 494
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / -2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 871 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 767
>dbj|AK117860.1| Arabidopsis thaliana At1g69370 mRNA for putative chorismate mutase,
complete cds, clone: RAFL19-02-D09
Length = 1143
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 359 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 538
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 539 WNMYFKHLLPRLVKPGDDGN 598
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 221 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 325
>gb|BT005306.1| Arabidopsis thaliana At1g69370 mRNA, complete cds
Length = 951
Score = 95.5 bits (202), Expect(2) = 2e-026
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +RE+E + +K RY+S E PFF +P + PP + L+ A S+N+N +
Sbjct: 343 SLVEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKV 522
Query: 514 WSMYFDELLPRLXKXGDDGN 573
W+MYF LLPRL K GDDGN
Sbjct: 523 WNMYFKHLLPRLVKPGDDGN 582
Score = 46.0 bits (94), Expect(2) = 2e-026
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
L L+++R L R+ED+I+F+L+ERA+Y N YD
Sbjct: 205 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYD 309
>emb|AX464578.1| Sequence 6 from Patent WO0202798
Length = 5176
Score = 62.9 bits (131), Expect(3) = 2e-021
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +1
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 2590 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 2694
Score = 58.3 bits (121), Expect(3) = 2e-021
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +1 / +3
Query: 472 LYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNY 576
L+P A SVN+N IW +YF ELLP K GDDGNY
Sbjct: 3471 LHPKALSVNINKQIWDIYFKELLPLFVKPGDDGNY 3575
Score = 29.5 bits (58), Expect(3) = 2e-021
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1 / +1
Query: 385 GRYQSLQEIPFFAYRVPSALAPPYNFTS 468
GRY+ +E PFF +P ++ P + + S
Sbjct: 3301 GRYEYPEENPFFLENIPHSVFPTHKYPS 3384
>emb|AJ242648.1|ATH242648 Arabidopsis thaliana CM2 gene for cytosolic chorismate mutase, exons
1-6
Length = 5177
Score = 62.9 bits (131), Expect(3) = 2e-021
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
LSLD +R+ L R+EDTIVFSLIERAK+PLN PA++
Sbjct: 2591 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFE 2695
Score = 58.3 bits (121), Expect(3) = 2e-021
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +1 / +1
Query: 472 LYPAAXSVNVNDAIWSMYFDELLPRLXKXGDDGNY 576
L+P A SVN+N IW +YF ELLP K GDDGNY
Sbjct: 3472 LHPKALSVNINKQIWDIYFKELLPLFVKPGDDGNY 3576
Score = 29.5 bits (58), Expect(3) = 2e-021
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1 / +2
Query: 385 GRYQSLQEIPFFAYRVPSALAPPYNFTS 468
GRY+ +E PFF +P ++ P + + S
Sbjct: 3302 GRYEYPEENPFFLENIPHSVFPTHKYPS 3385
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 979,318,908
Number of Sequences: 1013581
Number of extensions: 10681976
Number of successful extensions: 93634
Number of sequences better than 1.0e-020: 26
length of database: 302,980,290
effective HSP length: 56
effective length of database: 246,219,754
effective search space used: 49243950800
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)